NO02G05910.4, NO02G05910.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05910.4
Unique NameNO02G05910.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1408
Alignment locationchr2:1575377..1577317 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1575377..1577317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G05910.4 vs.
Match: XP_005854856.1 (vesicle-associated membrane protein 7 [Nannochloropsis gaditana CCMP526]; EKU21510.1 vesicle-associated membrane protein 7 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 275.4 bits (703), Expect = 1.300e-70
Identity = 144/183 (78.69%), Postives = 159/183 (86.89%), Query Frame = 0 
Query:    1 MAILYALVARGKTVLAQFTSTSGNFPTVTRFLLARIGDRGMPHGG-GEAGGQKMSIVYDQHVFHYVVDSSGGGQGQSSSSSSTSSPLIYLCMVDDAENKRRLAFLFLEEVQRRFMSTFGEAAYTAIAFAMNESFSPSLKAMMDFYNADPSADNLRQLRTKIDDTKSVMVENIDQVGREGGRRE 183
            MAILYALVARGKTVLA+FTSTSGNFPTVTRFLLARI D+G+  G  GE+ GQKMSI+YDQH+FHY+VD    GQG +      SSPLIYLCMVDDAENKRR+AFLFLEEVQRRFM+ +G+ AYTAIAFAMNESFSPSLK+MMDFYNADPSADNL+QLRTKIDDTKSVMVENIDQV   G + E
Sbjct:    1 MAILYALVARGKTVLAEFTSTSGNFPTVTRFLLARIEDKGVSQGSNGESSGQKMSIIYDQHIFHYLVD----GQGHA------SSPLIYLCMVDDAENKRRMAFLFLEEVQRRFMAAYGDTAYTAIAFAMNESFSPSLKSMMDFYNADPSADNLQQLRTKIDDTKSVMVENIDQVLERGEKIE 173
The following BLAST results are available for this feature:
BLAST of NO02G05910.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854856.11.300e-7078.69vesicle-associated membrane protein 7 [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05910NO02G05910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05910.4NO02G05910.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05910.4.cds1NO02G05910.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05910.4.cds2NO02G05910.4.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05910.4.cds3NO02G05910.4.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05910.4.cds4NO02G05910.4.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05910.4 ID=NO02G05910.4|Name=NO02G05910.4|organism=Nannochloropsis oceanica|type=mRNA|length=1408bp
ACAGACAGGAGCAGTTTAGCAAAGACAGACTCCCAGCTTCCTGATTTTGA
ACGCGAGCCTTCTTCCCTCCCTCCGCACTAGCCCGCCCTCCTCCTCCTCT
GCCTGCAGCCTGCTCCGACCATCACACATTGATAATGGCCATCCTCTACG
CTCTCGTCGCCCGGGGCAAGACTGTATTGGCCCAGTTCACGAGCACAAGC
GGCAACTTTCCCACCGTCACACGTTTTCTCCTCGCGCGAATCGGGGATCG
GGGCATGCCACATGGAGGCGGCGAAGCCGGTGGGCAGAAAATGTCGATCG
TCTACGACCAGCACGTCTTCCATTACGTCGTTGACAGCAGCGGAGGCGGC
CAGGGCCAGTCCTCCTCCTCCTCCTCCACCTCCTCCCCCCTCATCTACCT
GTGCATGGTGGACGATGCCGAGAACAAGCGCCGCCTCGCCTTCCTGTTCC
TTGAAGAGGTTCAACGTCGCTTCATGTCCACATTCGGCGAGGCAGCCTAC
ACGGCCATCGCCTTCGCCATGAACGAGTCCTTCTCCCCCTCCCTCAAGGC
CATGATGGACTTCTACAACGCCGATCCCTCCGCCGACAACCTGCGGCAGC
TGCGGACGAAGATCGATGACACCAAGAGTGTGATGGTGGAGAACATCGAC
CAGGTAGGGAGGGAGGGAGGAAGGAGGGAGGGAGGATTGGGCTGCCCATG
TGTTTGAGTTCTGAAGAAGCCGGCCCAAGGGTAAACTAAACAGGCGATCG
CATCGGCCGTGTGCCACCGCTTACTCCTCCCGCCCTCCCGCCCTCCCTCA
AGGTCCTAGCCAGGGGCGAGAAGATCGAGCTGCTGGTGGACAAGACTGAC
AGGCTCAGCCAGCAGGCCGTGCAGTTCAAAAGGTAGGAGGGAGGGAGGGA
GCCAAGAAGATCTCATATGGCGCCTGGGTGTCTCCACCTTTCTCCTGACG
GCCTTTTTCTCCCTCCGTCCCTCCCTCCTTCCCTTTCTCGCTCCCTCCCT
CGCCACCCTTAGACAATCTCGGCGGCTACAGCAGAGCATGTGGTGGCGGC
GCCTCAACCGGTCCCTCCTCCTCGCTTTTGTTCTATCCTTAGCTATCTTC
CTCTTCACTGCCCTCGGCTGCGGTGGCTTTGACTTCCACAGGTGCAAAAA
ATAGTGAAACACGGTCAGAATGCCTTCCCTCCCTCCCTCCCTCCCTCTCT
GCCTGCCTCCCTCCCTCCCCTCCATCCTCCTATGCTTCAAAGGTAGAGGG
GGGAGGGACCTTGGTTGTAAAGGGAGGGAGCAAGAGAGAGAGGAGAAGCG
AGGGAACAAGTGGGATGTAAATTCTTGTAGGAACAAACGAACAAAGGAAG
AAGGACGGCAAAAGACGCAGAAGTCGAAGAAATGAAAAAAAGTAGACGAA
ATGAGAAA
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protein sequence of NO02G05910.4

>NO02G05910.4-protein ID=NO02G05910.4-protein|Name=NO02G05910.4|organism=Nannochloropsis oceanica|type=polypeptide|length=191bp
MAILYALVARGKTVLAQFTSTSGNFPTVTRFLLARIGDRGMPHGGGEAGG
QKMSIVYDQHVFHYVVDSSGGGQGQSSSSSSTSSPLIYLCMVDDAENKRR
LAFLFLEEVQRRFMSTFGEAAYTAIAFAMNESFSPSLKAMMDFYNADPSA
DNLRQLRTKIDDTKSVMVENIDQVGREGGRREGGLGCPCV*
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mRNA from alignment at chr2:1575377..1577317-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05910.4 ID=NO02G05910.4|Name=NO02G05910.4|organism=Nannochloropsis oceanica|type=mRNA|length=1941bp|location=Sequence derived from alignment at chr2:1575377..1577317- (Nannochloropsis oceanica)
ACAGACAGGAGCAGTTTAGCAAAGACAGACTCCCAGCTTCCTGATTTTGA
ACGCGAGCCTTCTTCCCTCCCTCCGCACTAGCCCGCCCTCCTCCTCCTCT
GCCTGCAGCCTGCTCCGACCATCACACATTGATAATGGCCATCCTCTACG
CTCTCGTCGCCCGGGGCAAGACTGTATTGGCCCAGTTCACGGTAAGGCGG
ACAGCGAAGAAAAGGAGGACTGGGAAGGGGGTTGCTGCTTCGGGTGATGT
ACATGTGCATTCTGTTGCCCATCCCCTTCCTCTTTTCCTCCCTCTCGTTC
TTGGGACCCAAATAATATCGCAGAGCACAAGCGGCAACTTTCCCACCGTC
ACACGTTTTCTCCTCGCGCGAATCGGGGATCGGGGCATGCCACATGGAGG
CGGCGAAGCCGGGTACGTACATGGGAAGCGGTATATGTATGTGTCCGTCT
CGGATTGCGAAATGGGGCATGCTTCTGCCTACTGGTGTGCCTGTCAGGGT
CTTCTATACCGTATTTGTTCGCTTTCTCCTGCTCCATTTGCTTCAGGTGC
ATGCATATTTAATAACACGTAAATTTCTCCGATCAATCCGTCCGTCGCCT
CAGTGGGCAGAAAATGTCGATCGTCTACGACCAGCACGTCTTCCATTACG
TCGTTGACAGCAGCGGAGGCGGCCAGGGCCAGTCCTCCTCCTCCTCCTCC
ACCTCCTCCCCCCTCATCTACCTGTGCATGGTGGACGATGCCGAGAACAA
GCGCCGCCTCGCCTTCCTGTTCCTTGAAGAGGTTCAACGTCGCTTCATGT
CCACATTCGGCGAGGCAGCCTACACGGTAAGCACCCTTCCTCCCTCTTTT
CCTTCCTTCCTTCCTCCCTCCCTCTTTTCCTTCCTTCCTTCCTCCCTCCC
TCTTTCCCTCCAATCATCCCCAGGCGACCACCCCTACCATAAACGTGCGC
CTCCTTCCCGTCCTCAAGGCTGTGATGGACTCCCACCAATTCAACCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGGCCATCGCCTTCGC
CATGAACGAGTCCTTCTCCCCCTCCCTCAAGGCCATGATGGACTTCTACA
ACGCCGATCCCTCCGCCGACAACCTGCGGCAGCTGCGGACGAAGATCGAT
GACACCAAGAGTGTGATGGTGGAGAACATCGACCAGGTAGGGAGGGAGGG
AGGAAGGAGGGAGGGAGGATTGGGCTGCCCATGTGTTTGAGTTCTGAAGA
AGCCGGCCCAAGGGTAAACTAAACAGGCGATCGCATCGGCCGTGTGCCAC
CGCTTACTCCTCCCGCCCTCCCGCCCTCCCTCAAGGTCCTAGCCAGGGGC
GAGAAGATCGAGCTGCTGGTGGACAAGACTGACAGGCTCAGCCAGCAGGC
CGTGCAGTTCAAAAGGTAGGAGGGAGGGAGGGAGCCAAGAAGATCTCATA
TGGCGCCTGGGTGTCTCCACCTTTCTCCTGACGGCCTTTTTCTCCCTCCG
TCCCTCCCTCCTTCCCTTTCTCGCTCCCTCCCTCGCCACCCTTAGACAAT
CTCGGCGGCTACAGCAGAGCATGTGGTGGCGGCGCCTCAACCGGTCCCTC
CTCCTCGCTTTTGTTCTATCCTTAGCTATCTTCCTCTTCACTGCCCTCGG
CTGCGGTGGCTTTGACTTCCACAGGTGCAAAAAATAGTGAAACACGGTCA
GAATGCCTTCCCTCCCTCCCTCCCTCCCTCTCTGCCTGCCTCCCTCCCTC
CCCTCCATCCTCCTATGCTTCAAAGGTAGAGGGGGGAGGGACCTTGGTTG
TAAAGGGAGGGAGCAAGAGAGAGAGGAGAAGCGAGGGAACAAGTGGGATG
TAAATTCTTGTAGGAACAAACGAACAAAGGAAGAAGGACGGCAAAAGACG
CAGAAGTCGAAGAAATGAAAAAAAGTAGACGAAATGAGAAA
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Coding sequence (CDS) from alignment at chr2:1575377..1577317-

>NO02G05910.4 ID=NO02G05910.4|Name=NO02G05910.4|organism=Nannochloropsis oceanica|type=CDS|length=573bp|location=Sequence derived from alignment at chr2:1575377..1577317- (Nannochloropsis oceanica)
ATGGCCATCCTCTACGCTCTCGTCGCCCGGGGCAAGACTGTATTGGCCCA
GTTCACGAGCACAAGCGGCAACTTTCCCACCGTCACACGTTTTCTCCTCG
CGCGAATCGGGGATCGGGGCATGCCACATGGAGGCGGCGAAGCCGGTGGG
CAGAAAATGTCGATCGTCTACGACCAGCACGTCTTCCATTACGTCGTTGA
CAGCAGCGGAGGCGGCCAGGGCCAGTCCTCCTCCTCCTCCTCCACCTCCT
CCCCCCTCATCTACCTGTGCATGGTGGACGATGCCGAGAACAAGCGCCGC
CTCGCCTTCCTGTTCCTTGAAGAGGTTCAACGTCGCTTCATGTCCACATT
CGGCGAGGCAGCCTACACGGCCATCGCCTTCGCCATGAACGAGTCCTTCT
CCCCCTCCCTCAAGGCCATGATGGACTTCTACAACGCCGATCCCTCCGCC
GACAACCTGCGGCAGCTGCGGACGAAGATCGATGACACCAAGAGTGTGAT
GGTGGAGAACATCGACCAGGTAGGGAGGGAGGGAGGAAGGAGGGAGGGAG
GATTGGGCTGCCCATGTGTTTGA
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Synonyms
Publications