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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr2 | genome | chr2:1575377..1577317 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G05910.3 vs.
Match: EWM30066.1 (r- vamp71-family [Nannochloropsis gaditana]) HSP 1 Score: 362.8 bits (930), Expect = 9.600e-97 Identity = 188/244 (77.05%), Postives = 211/244 (86.48%), Query Frame = 0
Query: 50 LFLPLVLGTQIISQ--STSGNFPTVTRFLLARIGDRGMPHGG-GEAGGQKMSIVYDQHVFHYVVDSSGGGQGQSSSSSSTSSPLIYLCMVDDAENKRRLAFLFLEEVQRRFMSTFGEAAYTAIAFAMNESFSPSLKAMMDFYNADPSADNLRQLRTKIDDTKSVMVENIDQVLARGEKIELLVDKTDRLSQQAVQFKRQSRRLQQSMWWRRLNRSLLLAFVLSLAIFLFTALGCGGFDFHRCKK 291
L+ + G ++++ STSGNFPTVTRFLLARI D+G+ G GE+ GQKMSI+YDQH+FHY+VD GQG + SSPLIYLCMVDDAENKRR+AFLFLEEVQRRFM+ +G+ AYTAIAFAMNESFSPSLK+MMDFYNADPSADNL+QLRTKIDDTKSVMVENIDQVL RGEKIELLVDKTDRLSQQAVQFKRQSRRLQQSMWWRRLNR LLL+F L+LA+F T LGCGGFDFH+CKK
Sbjct: 4 LYALVARGKTVLAEFTSTSGNFPTVTRFLLARIEDKGVSQGSNGESSGQKMSIIYDQHIFHYLVD----GQGHA------SSPLIYLCMVDDAENKRRMAFLFLEEVQRRFMAAYGDTAYTAIAFAMNESFSPSLKSMMDFYNADPSADNLQQLRTKIDDTKSVMVENIDQVLERGEKIELLVDKTDRLSQQAVQFKRQSRRLQQSMWWRRLNRYLLLSFGLALALFFLTTLGCGGFDFHKCKK 237
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G05910.3 ID=NO02G05910.3|Name=NO02G05910.3|organism=Nannochloropsis oceanica|type=mRNA|length=1261bp
ACAGACAGGAGCAGTTTAGCAAAGACAGACTCCCAGCTTCCTGATTTTGA
ACGCGAGCCTTCTTCCCTCCCTCCGCACTAGCCCGCCCTCCTCCTCCTCT
GCCTGCAGCCTGCTCCGACCATCACACATTGATAATGGCCATCCTCTACG
CTCTCGTCGCCCGGGGCAAGACTGTATTGGCCCAGTTCACGGTAAGGCGG
ACAGCGAAGAAAAGGAGGACTGGGAAGGGGGTTGCTGCTTCGGGTGATGT
ACATGTGCATTCTGTTGCCCATCCCCTTCCTCTTTTCCTCCCTCTCGTTC
TTGGGACCCAAATAATATCGCAGAGCACAAGCGGCAACTTTCCCACCGTC
ACACGTTTTCTCCTCGCGCGAATCGGGGATCGGGGCATGCCACATGGAGG
CGGCGAAGCCGGTGGGCAGAAAATGTCGATCGTCTACGACCAGCACGTCT
TCCATTACGTCGTTGACAGCAGCGGAGGCGGCCAGGGCCAGTCCTCCTCC
TCCTCCTCCACCTCCTCCCCCCTCATCTACCTGTGCATGGTGGACGATGC
CGAGAACAAGCGCCGCCTCGCCTTCCTGTTCCTTGAAGAGGTTCAACGTC
GCTTCATGTCCACATTCGGCGAGGCAGCCTACACGGCCATCGCCTTCGCC
ATGAACGAGTCCTTCTCCCCCTCCCTCAAGGCCATGATGGACTTCTACAA
CGCCGATCCCTCCGCCGACAACCTGCGGCAGCTGCGGACGAAGATCGATG
ACACCAAGAGTGTGATGGTGGAGAACATCGACCAGGTCCTAGCCAGGGGC
GAGAAGATCGAGCTGCTGGTGGACAAGACTGACAGGCTCAGCCAGCAGGC
CGTGCAGTTCAAAAGACAATCTCGGCGGCTACAGCAGAGCATGTGGTGGC
GGCGCCTCAACCGGTCCCTCCTCCTCGCTTTTGTTCTATCCTTAGCTATC
TTCCTCTTCACTGCCCTCGGCTGCGGTGGCTTTGACTTCCACAGGTGCAA
AAAATAGTGAAACACGGTCAGAATGCCTTCCCTCCCTCCCTCCCTCCCTC
TCTGCCTGCCTCCCTCCCTCCCCTCCATCCTCCTATGCTTCAAAGGTAGA
GGGGGGAGGGACCTTGGTTGTAAAGGGAGGGAGCAAGAGAGAGAGGAGAA
GCGAGGGAACAAGTGGGATGTAAATTCTTGTAGGAACAAACGAACAAAGG
AAGAAGGACGGCAAAAGACGCAGAAGTCGAAGAAATGAAAAAAAGTAGAC
GAAATGAGAAA back to topprotein sequence of NO02G05910.3 >NO02G05910.3-protein ID=NO02G05910.3-protein|Name=NO02G05910.3|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MAILYALVARGKTVLAQFTVRRTAKKRRTGKGVAASGDVHVHSVAHPLPL
FLPLVLGTQIISQSTSGNFPTVTRFLLARIGDRGMPHGGGEAGGQKMSIV
YDQHVFHYVVDSSGGGQGQSSSSSSTSSPLIYLCMVDDAENKRRLAFLFL
EEVQRRFMSTFGEAAYTAIAFAMNESFSPSLKAMMDFYNADPSADNLRQL
RTKIDDTKSVMVENIDQVLARGEKIELLVDKTDRLSQQAVQFKRQSRRLQ
QSMWWRRLNRSLLLAFVLSLAIFLFTALGCGGFDFHRCKK* back to topmRNA from alignment at chr2:1575377..1577317- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G05910.3 ID=NO02G05910.3|Name=NO02G05910.3|organism=Nannochloropsis oceanica|type=mRNA|length=1941bp|location=Sequence derived from alignment at chr2:1575377..1577317- (Nannochloropsis oceanica)
ACAGACAGGAGCAGTTTAGCAAAGACAGACTCCCAGCTTCCTGATTTTGA
ACGCGAGCCTTCTTCCCTCCCTCCGCACTAGCCCGCCCTCCTCCTCCTCT
GCCTGCAGCCTGCTCCGACCATCACACATTGATAATGGCCATCCTCTACG
CTCTCGTCGCCCGGGGCAAGACTGTATTGGCCCAGTTCACGGTAAGGCGG
ACAGCGAAGAAAAGGAGGACTGGGAAGGGGGTTGCTGCTTCGGGTGATGT
ACATGTGCATTCTGTTGCCCATCCCCTTCCTCTTTTCCTCCCTCTCGTTC
TTGGGACCCAAATAATATCGCAGAGCACAAGCGGCAACTTTCCCACCGTC
ACACGTTTTCTCCTCGCGCGAATCGGGGATCGGGGCATGCCACATGGAGG
CGGCGAAGCCGGGTACGTACATGGGAAGCGGTATATGTATGTGTCCGTCT
CGGATTGCGAAATGGGGCATGCTTCTGCCTACTGGTGTGCCTGTCAGGGT
CTTCTATACCGTATTTGTTCGCTTTCTCCTGCTCCATTTGCTTCAGGTGC
ATGCATATTTAATAACACGTAAATTTCTCCGATCAATCCGTCCGTCGCCT
CAGTGGGCAGAAAATGTCGATCGTCTACGACCAGCACGTCTTCCATTACG
TCGTTGACAGCAGCGGAGGCGGCCAGGGCCAGTCCTCCTCCTCCTCCTCC
ACCTCCTCCCCCCTCATCTACCTGTGCATGGTGGACGATGCCGAGAACAA
GCGCCGCCTCGCCTTCCTGTTCCTTGAAGAGGTTCAACGTCGCTTCATGT
CCACATTCGGCGAGGCAGCCTACACGGTAAGCACCCTTCCTCCCTCTTTT
CCTTCCTTCCTTCCTCCCTCCCTCTTTTCCTTCCTTCCTTCCTCCCTCCC
TCTTTCCCTCCAATCATCCCCAGGCGACCACCCCTACCATAAACGTGCGC
CTCCTTCCCGTCCTCAAGGCTGTGATGGACTCCCACCAATTCAACCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGGCCATCGCCTTCGC
CATGAACGAGTCCTTCTCCCCCTCCCTCAAGGCCATGATGGACTTCTACA
ACGCCGATCCCTCCGCCGACAACCTGCGGCAGCTGCGGACGAAGATCGAT
GACACCAAGAGTGTGATGGTGGAGAACATCGACCAGGTAGGGAGGGAGGG
AGGAAGGAGGGAGGGAGGATTGGGCTGCCCATGTGTTTGAGTTCTGAAGA
AGCCGGCCCAAGGGTAAACTAAACAGGCGATCGCATCGGCCGTGTGCCAC
CGCTTACTCCTCCCGCCCTCCCGCCCTCCCTCAAGGTCCTAGCCAGGGGC
GAGAAGATCGAGCTGCTGGTGGACAAGACTGACAGGCTCAGCCAGCAGGC
CGTGCAGTTCAAAAGGTAGGAGGGAGGGAGGGAGCCAAGAAGATCTCATA
TGGCGCCTGGGTGTCTCCACCTTTCTCCTGACGGCCTTTTTCTCCCTCCG
TCCCTCCCTCCTTCCCTTTCTCGCTCCCTCCCTCGCCACCCTTAGACAAT
CTCGGCGGCTACAGCAGAGCATGTGGTGGCGGCGCCTCAACCGGTCCCTC
CTCCTCGCTTTTGTTCTATCCTTAGCTATCTTCCTCTTCACTGCCCTCGG
CTGCGGTGGCTTTGACTTCCACAGGTGCAAAAAATAGTGAAACACGGTCA
GAATGCCTTCCCTCCCTCCCTCCCTCCCTCTCTGCCTGCCTCCCTCCCTC
CCCTCCATCCTCCTATGCTTCAAAGGTAGAGGGGGGAGGGACCTTGGTTG
TAAAGGGAGGGAGCAAGAGAGAGAGGAGAAGCGAGGGAACAAGTGGGATG
TAAATTCTTGTAGGAACAAACGAACAAAGGAAGAAGGACGGCAAAAGACG
CAGAAGTCGAAGAAATGAAAAAAAGTAGACGAAATGAGAAA back to topCoding sequence (CDS) from alignment at chr2:1575377..1577317- >NO02G05910.3 ID=NO02G05910.3|Name=NO02G05910.3|organism=Nannochloropsis oceanica|type=CDS|length=873bp|location=Sequence derived from alignment at chr2:1575377..1577317- (Nannochloropsis oceanica)
ATGGCCATCCTCTACGCTCTCGTCGCCCGGGGCAAGACTGTATTGGCCCA
GTTCACGGTAAGGCGGACAGCGAAGAAAAGGAGGACTGGGAAGGGGGTTG
CTGCTTCGGGTGATGTACATGTGCATTCTGTTGCCCATCCCCTTCCTCTT
TTCCTCCCTCTCGTTCTTGGGACCCAAATAATATCGCAGAGCACAAGCGG
CAACTTTCCCACCGTCACACGTTTTCTCCTCGCGCGAATCGGGGATCGGG
GCATGCCACATGGAGGCGGCGAAGCCGGTGGGCAGAAAATGTCGATCGTC
TACGACCAGCACGTCTTCCATTACGTCGTTGACAGCAGCGGAGGCGGCCA
GGGCCAGTCCTCCTCCTCCTCCTCCACCTCCTCCCCCCTCATCTACCTGT
GCATGGTGGACGATGCCGAGAACAAGCGCCGCCTCGCCTTCCTGTTCCTT
GAAGAGGTTCAACGTCGCTTCATGTCCACATTCGGCGAGGCAGCCTACAC
GGCCATCGCCTTCGCCATGAACGAGTCCTTCTCCCCCTCCCTCAAGGCCA
TGATGGACTTCTACAACGCCGATCCCTCCGCCGACAACCTGCGGCAGCTG
CGGACGAAGATCGATGACACCAAGAGTGTGATGGTGGAGAACATCGACCA
GGTCCTAGCCAGGGGCGAGAAGATCGAGCTGCTGGTGGACAAGACTGACA
GGCTCAGCCAGCAGGCCGTGCAGTTCAAAAGACAATCTCGGCGGCTACAG
CAGAGCATGTGGTGGCGGCGCCTCAACCGGTCCCTCCTCCTCGCTTTTGT
TCTATCCTTAGCTATCTTCCTCTTCACTGCCCTCGGCTGCGGTGGCTTTG
ACTTCCACAGGTGCAAAAAATAG back to top
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