Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr2 genome chr2:1373671..1377801 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G05140.1 vs.
Match: EWM30108.1 (hypothetical protein Naga_100310g5 [Nannochloropsis gaditana])
HSP 1 Score: 830.5 bits (2144), Expect = 4.200e-237
Identity = 456/696 (65.52%), Postives = 527/696 (75.72%), Query Frame = 0
Query: 71 MALSRRRPC---ICRSLA---MLILAAAASSLCARAFVLPFANPTFRRPFFSLAAGAGGGGSGRSSNTNGKRPDRSSNSSGGGPQGGSNDSGSSSISSSSSGTSRLERLVRKSSSSSSSSLSFNKQPGSSSTGSRSSDSSSEPRMRSPRFSTPPYHSSRSPSSSSSSSSFSSSPQSF--PKKIGPISEEVGQHLTPKMYAPREAFDIDARPNSRKARKAASSAAATGARGGGGEEEGGE--GGGGGWRRPSRIDQRRDRKQKAAVDEKMRRLKVQRFGKEGLLFKDGQAGGREGGGKDDLLQCEHFGACSGCFFRSGFTETPLMEDARVFFRRVARYENFNLGLATGIHDWRTQAKLAIAPLSKWGGCRIGLYEEGTHRVLPIPNCRVHHPSINHAVDIITQATELVKTRAFDQDSLSGSLRYIQCAVERRTGKIQLTLVWNAPGRKEASAELSRLLKALKAADPAQELWHSIWVNYRTGPGNTIFARDPRSWSKVQGLDYLTEKIGPSQVLFYLTPQLFRQGNLEGFGKVVERAQDFVPEQSVVCELYGGVGVIGLNMLGKVSALRFSDINPFLEGCVMKTLDALPEKRREKVSFMVATALEGLEAGQADGADVLIVDPPRKGLEAEVMTHLVDRKDPLAGSLKRIVYVSCGFDALKRDAVALMDSGWRLVHAEGFVLFPGSDHLETLAIFDRGR 757
MAL RRRP +C L+ M ++ S+CA + PF R +G S++TNG G S SGSS + R +RL RK SS S SFN+ PG R++DSS P RS ++ S SSSP SF P+ GPISE VGQHLTP+ AP E FD+DARPNS+KARK ASS ++G G EEG E G GGW+RPSR+ QRR+++Q+AA+DEKMRR+K+QRFGKEGLLFKDG AGG+ GGG+DD LQCEHFGACSGCF+RSG ETP+ME+ARVFF+RVARY+NF+LGLATG+H WRTQAKLA+APLSKWGGC++GLYEEG+HRVLPIPNCRVHHPSIN AV ++T+AT +KTRAFD SL GSLRY+Q AVERRTG+IQLTLVWNAPG+KEA ELSRLLKALKAAD + ELWHSIWVN+RTGPGNTIFAR+ RSW+K+ G D+LTEKIGPSQ LFYLTPQLFRQGNL+GF K+V RAQ+FVP QSVVCELYGG GVIGLNMLGK +ALRFSDINP+L CV KTL ALP K+REKVSF++ATALE LEAG ADGA VLIVDPPRKGLE+EV+ HLVDRKDP AG+L+RIVYVSCGF+ALKRDAVALMDSGWRLVHAEGFVLFPGSDHLETLA+FDR R
Sbjct: 9 MALPRRRPRKTRLCWRLSFTIMFLMICVFHSVCA--YFTPFGTKGLRHSH-----------TGLSASTNG--------------DGNSRKSGSSDPEAGKGDPPRFKRLARKMSSKS---FSFNQIPGRK----RAADSSDSP--------------DRSNTARMRPSPPSSSPSSFHEPRGSGPISEAVGQHLTPEAAAPPEIFDVDARPNSQKARKVASSQ----SQGKGHREEGLEEDNGAGGWQRPSRVQQRREKRQQAAMDEKMRRVKIQRFGKEGLLFKDGLAGGQAGGGRDDALQCEHFGACSGCFYRSGLVETPVMENARVFFQRVARYDNFSLGLATGVHGWRTQAKLAVAPLSKWGGCQLGLYEEGSHRVLPIPNCRVHHPSINRAVQVLTEATVTMKTRAFDPASLGGSLRYVQVAVERRTGRIQLTLVWNAPGKKEAGGELSRLLKALKAADASGELWHSIWVNFRTGPGNTIFAREARSWTKLFGADFLTEKIGPSQTLFYLTPQLFRQGNLDGFEKLVTRAQEFVPAQSVVCELYGGGGVIGLNMLGKAAALRFSDINPYLGQCVDKTLQALPAKKREKVSFIIATALEALEAGHADGATVLIVDPPRKGLESEVLAHLVDRKDPYAGTLRRIVYVSCGFEALKRDAVALMDSGWRLVHAEGFVLFPGSDHLETLAVFDRTR 652
The following BLAST results are available for this feature:
BLAST of NO02G05140.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 Expect = 4.20e-237 / Id = 65.52 Sequence EWM30108.1
Match Name E-value Identity Description
EWM30108.1 4.200e-237 65.52 hypothetical protein Naga_100310g5 [Nannochloropsi... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO02G05140.1 ID=NO02G05140.1|Name=NO02G05140.1|organism=Nannochloropsis oceanica|type=mRNA|length=3930bp back to top protein sequence of NO02G05140.1
>NO02G05140.1-protein ID=NO02G05140.1-protein|Name=NO02G05140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=757bp back to top mRNA from alignment at chr2:1373671..1377801+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05140.1 ID=NO02G05140.1|Name=NO02G05140.1|organism=Nannochloropsis oceanica|type=mRNA|length=4131bp|location=Sequence derived from alignment at chr2:1373671..1377801+ (Nannochloropsis oceanica)ATGCTTGTGAAGTTTCAAA
GCGGAGGAGTCTCGGACATCAAGTCAACTCGCCGCATCCGCGCCTTGCGG
CCGCCTCGCTCCCCCGTCGCCCTTCCACTATCCCAGGGCCACCACTTTGC
CTGGAGTTGTTTTCCTCCATCTTTCCAAACACACCCACAGCCATCCATAA
GCACAGGCTCTTCAAGAAGAAAGGACGGGCCGCGAGGTGAAATGGCCTTG
TCCAGAAGAAGACCTTGCATCTGCCGCAGCCTCGCCATGCTAATATTG GT
ACGTACGCCTCTGTGTGGTGGCCAGGACAATGCCCTATGCCACCCCACTC
TTCCCTCTTGTCTTGTAATATTTCCCAAGCATTTTTTACGGCCACGAGAG
CATTGTCGTGAGGATGCAATCTCTTGTCACCCTCCGCGCACCGCCACCCC
CGCCCTCCCTCACTCCCCTCCCATTATCTGCGCCCAATTCAATTCGCAGG
CCGCCGCCGCCTCCTCCCTTTGCGCTCGAGCATTTGTCCTTCCGTTTGCC
AACCCCACTTTCCGACGTCCATTCTTCAGCCTTGCTGCAGGTGCTGGTGG
TGGCGGTAGCGGCAGAAGCAGCAACACCAACGGCAAACGGCCCGATCGCA
GCAGCAATAGCAGCGGCGGTGGACCCCAGGGAGGCAGCAACGACAGCGGG
AGCAGCAGCATTAGCAGCAGCAGCAGTGGAACCTCTCGGCTTGAACGTTT
AGTTCGTAAGTCCTCCTCCTCCTCCTCCTCCTCCTTATCCTTCAACAAAC
AACCAGGAAGCAGCAGTACAGGCAGCAGAAGCAGTGACAGCAGCAGCGAG
CCCCGCATGCGCTCCCCCAGATTTTCCACCCCTCCTTATCATTCTTCTCG
GTCACCCTCCTCTTCCTCTTCCTCCTCCTCCTTCTCCTCCTCCCCGCAAT
CGTTCCCCAAAAAAATCGGCCCTATCTCAGAAGAAGTGGGCCAACACCTT
ACCCCTAAGATGTACGCGCCGCGAGAAGCCTTTGACATCGATGCACGACC
CAACAGTCGCAAGGCTCGCAAGGCCGCCTCATCGGCAGCAGCGACGGGTG
CACGAGGAGGAGGGGGGGAAGAGGAAGGGGGTGAGGGAGGGGGAGGTGGA
TGGCGAAGGCCGTCGAGGATTGATCAGCGGAGGGACAGGAAGCAGAAGGC
GGCGGTCGATGAGAAGATGAGGAGGTTGAAGGTGCAAAGGTTTGGAAAGG
AGGGATTATTGTTCAAAGACGGGCAAGCGGGGGGGAGGGAGGGAGGGGGA
AAGGACGATTTGCTGCAGTGTGAGCATTTTGGGGCATGTTCCGGGTGTTT
TTTCAGGAGCGGGTTCACAGAGACTCCGTTAATGGAGGATGCCCGCGTGT
TTTTCCGACGGGTGGCTCGGTACGAGAACTTTAATTTGGGCCTCGCGACC
GGTATACATGACTGGCGGACACAAGCCAAGCTGGCTATTGCCCCTCTCTC
CAAATGGGGGGGTTGTCGCATCGGGCTTTATGAGGAAGGGACACATCGCG
TCTTGCCCATTCCCAACTGCCGAGTCCACCATCCAAGCATCAACCATGCC
GTGGATATCATTACTCAAGCAACCGAACTTGTCAAAACCCGTGCATTTGA
CCAAGATTCCCTTAGTGGCTCCCTGCGCTACATCCAATGCGCCGTGGAAC
GGCGCACGGGGAAAATCCAGCTTACCCTTGTCTGGAACGCCCCTGGGCGG
AAAGAGGCCAGTGCGGAGCTTTCCCGCTTGCTGAAAGCCTTGAAGGCTGC
TGATCCTGCGCAAGAATTATGGCATTCGATTTGGGTCAATTATAGAACCG
GGCCAGGCAATACAATTTTTGCACGGGACCCGAGGTCATGGTCCAAGGTG
CAGGGGCTTGATTATCTAACGGAAAAGATAGGGCCGAGCCAAGTGTTATT
TTATTTGACACCGCAGTTGTTTCGACAGGGAAATTTGGAGGGCTTTGGGA
AGGTAGTGGAGAGAGCACAGGATTTCGTGCCGGAGCAGAGTGTGGTGTGT
GAATTGTATGGAGGGGTGGGGGTGATTGGGTTGAACATGCTCGGGAAGGT
CTCGGCCTTAAGATTTTCGGATATCAATCCTTTTCTGGAAGGGTGTGTAA
TGAAGACGTTGGATGCGCTGCCAGAAAAGAGGCGAGAGAAGGTGTCGTTC
ATGGTGGCGACGGCTTTGGAGGGGTTGGAGGCAGGGCAGGCGGATGGCGC
GGATGTCTTGATTGTGGATCCTCCGCGGAAGGGCTTAGAAGCGGAAGTGA
TGACGCATTTGGTGGACAGGAAGGACCCATTGGCAGGGAGTTTGAAACGA
ATTGTGTATGTCTCGTGTGGGTTTGATGCGTTAAAGCGGGACGCGGTGGC
CTTGATGGACAGTGGGTGGCGCTTGGTGCATGCCGAGGGCTTTGTCTTGT
TTCCGGGGTCGGATCATTTGGAGACGCTGGCCATTTTTGACCGGGGACGA
TAA back to top Coding sequence (CDS) from alignment at chr2:1373671..1377801+
>NO02G05140.1 ID=NO02G05140.1|Name=NO02G05140.1|organism=Nannochloropsis oceanica|type=CDS|length=2271bp|location=Sequence derived from alignment at chr2:1373671..1377801+ (Nannochloropsis oceanica) back to top