NO02G04650.1, NO02G04650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04650.1
Unique NameNO02G04650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length555
Alignment locationchr2:1252567..1253629 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1252567..1253629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04650.1 vs.
Match: XP_008611606.1 (hypothetical protein SDRG_07548 [Saprolegnia diclina VS20]; EQC34734.1 hypothetical protein SDRG_07548 [Saprolegnia diclina VS20])

HSP 1 Score: 105.9 bits (263), Expect = 1.400e-19
Identity = 45/83 (54.22%), Postives = 66/83 (79.52%), Query Frame = 0 
Query:   34 VEAYGFAGWVGTFVVSGLFLLWAYLPEAWLHTWGITYYPNKEWALSIPAFLCMSYMLSGVVYVSLNLLSTAPLSSYETLTDRW 117
            +E YGFAGW+ + VV   +LLWAYLP++ L+ +GI+YYP++ WA+++PA LCMS  +  V+YV++NLLSTAPL SY T+ D++
Sbjct:   45 MEIYGFAGWIASIVVFACYLLWAYLPDSVLNQYGISYYPSRYWAVALPAMLCMSIFMVLVIYVAINLLSTAPLDSYNTIRDKY 127
The following BLAST results are available for this feature:
BLAST of NO02G04650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_008611606.11.400e-1954.22hypothetical protein SDRG_07548 [Saprolegnia dicli... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04650NO02G04650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04650.1NO02G04650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04650.1.cds1NO02G04650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04650.1.cds2NO02G04650.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04650.1.cds3NO02G04650.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04650.1 ID=NO02G04650.1|Name=NO02G04650.1|organism=Nannochloropsis oceanica|type=mRNA|length=555bp
ATGCCCTTCAACGCCATGGCCCATGTCTCTCTCTACATGCCCGAGGTCAC
GATCCCAGCCCAGCACCCTGTCCTCCGTCCCTCGTCTCTAATGAATAGCG
TAGAAGCCTATGGGTTTGCGGGTTGGGTTGGCACCTTTGTTGTTTCCGGT
CTCTTTCTCCTCTGGGCATATCTTCCGGAGGCATGGCTGCACACATGGGG
CATCACCTACTATCCGAACAAAGAGTGGGCCTTGTCGATACCCGCGTTTC
TGTGCATGTCCTATATGCTGTCAGGGGTGGTGTATGTGAGCCTGAATTTA
TTGAGTACCGCCCCTCTTTCTTCATACGAGACACTCACGGATCGATGGGC
ACGTCCACCACCCGTATACGTCGAAGATGGTATGACATCAGGGATGAAGG
AGAATAAGAAGGAACGGGATGGAGGAAGTCAGGAGGAGCGGCAGGTACCG
CCACCGCTGCGGCCGCCGCCGCCATCGGTGCCGCACTTTGCTGACTTGGA
CATTGGCGTGGTTAATGATTATTTGTACGGGGACAAGGGGAAAGGGGGAG
ATTGA
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protein sequence of NO02G04650.1

>NO02G04650.1-protein ID=NO02G04650.1-protein|Name=NO02G04650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MPFNAMAHVSLYMPEVTIPAQHPVLRPSSLMNSVEAYGFAGWVGTFVVSG
LFLLWAYLPEAWLHTWGITYYPNKEWALSIPAFLCMSYMLSGVVYVSLNL
LSTAPLSSYETLTDRWARPPPVYVEDGMTSGMKENKKERDGGSQEERQVP
PPLRPPPPSVPHFADLDIGVVNDYLYGDKGKGGD*
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mRNA from alignment at chr2:1252567..1253629+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04650.1 ID=NO02G04650.1|Name=NO02G04650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1063bp|location=Sequence derived from alignment at chr2:1252567..1253629+ (Nannochloropsis oceanica)
ATGCCCTTCAACGCCATGGCCCATGTCTCTCTCTACATGCCCGAGGTCAC
GATGTGAGTGCATCCCTGAGGCTCAACCATTCTTGAATCATGAAAGTCAT
ACCAGGTGAGCGTTATACGGAAACAAAGAGTTCCATTCCTTAGATGGCCG
TGAGGTGACCATCTATGGGATTGGACTGGGTGACTGGGGCAACCCATGTC
GAGTTCCTGCGCAGGAACCTGCGCAAGACACTAGTTGTAGTATATATATA
GTGCTTGTCCATCTTTTAGGCCAATCGAAAAGTGCGCTTCCGGTCTAATA
AATCACCGCAATGCACTATCAATGTCCTCTCACAAAATTCGTCACACACA
GGTTTGCACTGGTGGGTACCTCGCGGGCATCTCCTGGAGATGAGGTCCCA
CCTGCAATCAGCCAACTTGTAGGAGGCAAGCAGTGAGGAGGAACCCCACC
ATCAACCTTCAGCCCAGCCCAGCACCCTGTCCTCCGTCCCTCGTCTCTAA
TGAATAGCGTAGAAGCCTATGGGTTTGCGGGTTGGGTTGGCACCTTTGTT
GTTTCCGGTAAGTCGTCTTGGTTGGGTCGCCTCCGTTCCCCCCACTTCCA
CGCCTACTTTCCCTGTTTTATTCCCCTCCCTGCCACCCACTTGTCCCCAC
TACCAGGTCTCTTTCTCCTCTGGGCATATCTTCCGGAGGCATGGCTGCAC
ACATGGGGCATCACCTACTATCCGAACAAAGAGTGGGCCTTGTCGATACC
CGCGTTTCTGTGCATGTCCTATATGCTGTCAGGGGTGGTGTATGTGAGCC
TGAATTTATTGAGTACCGCCCCTCTTTCTTCATACGAGACACTCACGGAT
CGATGGGCACGTCCACCACCCGTATACGTCGAAGATGGTATGACATCAGG
GATGAAGGAGAATAAGAAGGAACGGGATGGAGGAAGTCAGGAGGAGCGGC
AGGTACCGCCACCGCTGCGGCCGCCGCCGCCATCGGTGCCGCACTTTGCT
GACTTGGACATTGGCGTGGTTAATGATTATTTGTACGGGGACAAGGGGAA
AGGGGGAGATTGA
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Coding sequence (CDS) from alignment at chr2:1252567..1253629+

>NO02G04650.1 ID=NO02G04650.1|Name=NO02G04650.1|organism=Nannochloropsis oceanica|type=CDS|length=555bp|location=Sequence derived from alignment at chr2:1252567..1253629+ (Nannochloropsis oceanica)
ATGCCCTTCAACGCCATGGCCCATGTCTCTCTCTACATGCCCGAGGTCAC
GATCCCAGCCCAGCACCCTGTCCTCCGTCCCTCGTCTCTAATGAATAGCG
TAGAAGCCTATGGGTTTGCGGGTTGGGTTGGCACCTTTGTTGTTTCCGGT
CTCTTTCTCCTCTGGGCATATCTTCCGGAGGCATGGCTGCACACATGGGG
CATCACCTACTATCCGAACAAAGAGTGGGCCTTGTCGATACCCGCGTTTC
TGTGCATGTCCTATATGCTGTCAGGGGTGGTGTATGTGAGCCTGAATTTA
TTGAGTACCGCCCCTCTTTCTTCATACGAGACACTCACGGATCGATGGGC
ACGTCCACCACCCGTATACGTCGAAGATGGTATGACATCAGGGATGAAGG
AGAATAAGAAGGAACGGGATGGAGGAAGTCAGGAGGAGCGGCAGGTACCG
CCACCGCTGCGGCCGCCGCCGCCATCGGTGCCGCACTTTGCTGACTTGGA
CATTGGCGTGGTTAATGATTATTTGTACGGGGACAAGGGGAAAGGGGGAG
ATTGA
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Synonyms
Publications