NO02G04490.1, NO02G04490.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G04490.1
Unique Name	NO02G04490.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2061
Alignment location	chr2:1215094..1217717 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:1215094..1217717 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO02G04490.1 vs.
Match: EWM30272.1 (s-adenosyl-methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 518.1 bits (1333), Expect = 2.800e-143
Identity = 285/445 (64.04%), Postives = 347/445 (77.98%), Query Frame = 0

Query:   21 GSATFLFPSSSAFSSTSLHISPRISSKQRPPALLS-----RSFSEDNEPSTSALDPTFASEYHAPVMWREVLDHFITDPQGLYLDCTLGGGGHSEAILTRLKQPGGKLIALDQDPDALAFAGKRLKSQEEEGRFRAVRANFRVASEVLVAEGLMTPEAAEGREPGPFAGMLLDLGVSSHQLDEASRGFSFRGDGPLDMRMEGPNIHSSSSSSSSFSSSSSLSADEIVNTWEVGAISKVLKEYGEEPRAYKLARAIVSARPLTSTGQLKEVIERHTPYTERPKVLARVFQGLRIAVNGEMDALDSILFQSTRLVRPGGRLVVLSYHSLEDRPVKRFLRAGNKDGVVERDFYGHALSTWKVLTRSSMRPQEDEVELNPRARSVSMRVGERTELMEDEVRSRVEAPPA---GKGRGGGGEGGGEGGGIRPLGRKQRERQRLMEEGGER 458
            G   FLF ++  F+S SL      SS++RP    S     +S S +   + + +   F+SEYH+PVMWREVL+H +TD +GLYLDCTLGGGGHSEAILTRL++PGGK+IALDQDPDAL FAGKRL+ +   GRF+A+RANFR A++VL++EGL+TPEAA G EPGPF+G+LLDLGVSSHQLD A+RGFSFRGDGPLDMRM+GP    +S+SSSS    S+LSA +IVNTWEVGA+SKVL+ YGEEPRAYK+ARAI S+RPL ST +L+EV+ +  PY ERPKVLARVFQGLRIAVNGE++AL++IL QSTRLVR GGRLVVLSYHSLEDRPVKRFLRAGNK+G VERDFYGH +STW+ + R+S+RP+EDEV +NPRARSVSMRVGERTEL E +VR+RV+A P     K R        E   +   G + + RQ   + G ER
Sbjct:    5 GQIGFLFSNTKLFASFSL--CRPFSSRRRPRPCTSDPHVDKSDSIEVHTNENKIASPFSSEYHSPVMWREVLEHLVTDTRGLYLDCTLGGGGHSEAILTRLEEPGGKVIALDQDPDALDFAGKRLEQEVGRGRFKALRANFRAATDVLLSEGLITPEAAAGTEPGPFSGILLDLGVSSHQLDVAARGFSFRGDGPLDMRMQGPMKPPTSTSSSS--PPSALSAGDIVNTWEVGALSKVLRAYGEEPRAYKIARAIESSRPLKSTTELREVVAKCAPYAERPKVLARVFQGLRIAVNGEVEALEAILTQSTRLVRRGGRLVVLSYHSLEDRPVKRFLRAGNKEGRVERDFYGHEVSTWRAVARTSIRPKEDEVSMNPRARSVSMRVGERTELGEAQVRARVDALPTVTYTKPRQIPHMEKSESTIVSNNGDEMKARQEAGDRGDER 445

The following BLAST results are available for this feature:

BLAST of NO02G04490.1 vs.

BLAST of NO02G04490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM30272.1	2.800e-143	64.04	s-adenosyl-methyltransferase [Nannochloropsis gadi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G04490	NO02G04490	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G04490.1	NO02G04490.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G04490.1.cds1	NO02G04490.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G04490.1.cds2	NO02G04490.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G04490.1.cds3	NO02G04490.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G04490.1.cds4	NO02G04490.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G04490.1.cds5	NO02G04490.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:1215094..1217717-
coding sequence from alignment at chr2:1215094..1217717-

mRNA sequence

>NO02G04490.1 ID=NO02G04490.1|Name=NO02G04490.1|organism=Nannochloropsis oceanica|type=mRNA|length=2061bp
ATGCTGCCCCGACGGGCAACGGCTACTCTATCTTTCCCCGGCACGACACG
GAGAGTTTCCGGTTCGGCTACCTTCCTCTTTCCTTCCTCTTCTGCCTTCT
CCTCCACCTCCCTCCACATCTCGCCCCGCATTAGCAGCAAACAGCGTCCT
CCAGCCCTCTTATCCCGATCCTTCTCAGAAGACAATGAGCCCAGCACATC
AGCCCTCGACCCCACTTTTGCAAGTGAATATCATGCCCCAGTCATGTGGC
GAGAGGTTCTTGATCATTTTATCACAGACCCACAAGGCCTTTACTTGGAT
TGTACGTTGGGTGGAGGAGGGCATTCGGAAGCAATTCTCACTCGATTGAA
GCAGCCTGGTGGGAAGCTGATTGCCTTAGATCAAGATCCTGATGCTTTGG
CTTTCGCGGGGAAACGTCTGAAAAGTCAGGAAGAAGAGGGGAGATTTCGG
GCGGTCAGGGCGAATTTCCGTGTGGCGAGTGAAGTACTGGTAGCGGAGGG
GTTGATGACGCCAGAGGCCGCCGAAGGGAGGGAACCAGGGCCATTTGCGG
GTATGCTTCTGGATTTGGGCGTTTCCTCGCATCAGCTTGATGAAGCTTCG
AGGGGGTTTAGCTTCAGGGGTGATGGACCACTGGACATGCGCATGGAGGG
CCCCAACATCCACTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCT
CCTCCCTCTCAGCCGACGAAATTGTGAACACTTGGGAAGTAGGAGCAATA
TCGAAAGTACTCAAAGAGTACGGAGAGGAGCCGCGTGCCTATAAATTGGC
GCGGGCGATAGTGTCCGCCCGTCCACTCACTTCCACGGGACAGTTGAAGG
AGGTGATTGAACGACACACGCCTTATACAGAGAGGCCTAAAGTCCTGGCA
CGTGTTTTTCAAGGCCTCCGCATCGCAGTAAACGGCGAGATGGATGCTCT
TGACTCCATCCTCTTCCAATCCACGCGCCTTGTACGACCAGGAGGGAGGC
TTGTCGTCCTCTCTTACCATTCGCTCGAGGACCGCCCCGTAAAAAGATTT
TTAAGGGCCGGGAATAAAGACGGGGTCGTCGAACGTGATTTTTATGGACA
CGCCCTCAGCACATGGAAAGTACTCACACGCTCCTCCATGAGGCCGCAAG
AAGATGAAGTTGAGCTCAATCCAAGGGCGAGAAGCGTGAGTATGAGGGTG
GGGGAAAGGACGGAGTTGATGGAGGACGAGGTACGGTCGAGGGTGGAAGC
CCCGCCGGCTGGGAAGGGAAGGGGAGGAGGAGGAGAAGGAGGAGGAGAAG
GAGGAGGGATAAGACCGTTGGGAAGAAAGCAACGCGAGCGGCAGCGGTTG
ATGGAGGAGGGGGGGGAGAGGTAGGGAAGTCTTGGAAATAAGGAGGCATG
GGAAGTCTTGAAAATAAGGAGGCGTGGGAAGTCTTGAAAATAAGAGGAGA
AGCAAATGCACGGGGGAGGGAGGTAAAGTATCGGCTGGCGAGCTGTAGGG
TGATACATACAGCGTATCTGTGGGGGTTAGGGTCAGGATGGGAAGGAAGT
CAACAGATCGAGTGGAGGGAAAGTGTGAAAGAAGTGGGAGGTTTTACGCC
GGGCTGTGAAGTCAATACAGTGATGTATATACATTTGAAGTCACTCACGC
GCACACGACGTGAATATTGTCTACTACTCTAAACCGAGACCCTGGTTCAC
GTTACTTTCCCCTCGGATTGCATAGGGCTTGTCAGTATTCCTTCAAGGGA
GAGACGCAACTCACTGATATGCGTCTCGGGGCCTGGCATGTTCCGACTCG
AGCGTCGGAAGAAAGGCTTCTCCGGGTAACCAATGCCTCCGGACCCACTT
TTCCCACAAAGCCAGAGTTATGTGTCTAATGTGTAGTAAAATACTGTTTA
AATACACCACTCTTTCGGCTCCCGAATGTTTGTGGACATGTTGACTCGAC
GGTTCTGCGTCTCTGGAGGCCAAAAAGGAGGACGATCTTTTTCAAGGATC
GGCATGCCGCCGTGCGGCTGACTCGATTTACCGGTGCGGTGCACTTCTTA
CCCACTTAAAA

protein sequence of NO02G04490.1

>NO02G04490.1-protein ID=NO02G04490.1-protein|Name=NO02G04490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=458bp
MLPRRATATLSFPGTTRRVSGSATFLFPSSSAFSSTSLHISPRISSKQRP
PALLSRSFSEDNEPSTSALDPTFASEYHAPVMWREVLDHFITDPQGLYLD
CTLGGGGHSEAILTRLKQPGGKLIALDQDPDALAFAGKRLKSQEEEGRFR
AVRANFRVASEVLVAEGLMTPEAAEGREPGPFAGMLLDLGVSSHQLDEAS
RGFSFRGDGPLDMRMEGPNIHSSSSSSSSFSSSSSLSADEIVNTWEVGAI
SKVLKEYGEEPRAYKLARAIVSARPLTSTGQLKEVIERHTPYTERPKVLA
RVFQGLRIAVNGEMDALDSILFQSTRLVRPGGRLVVLSYHSLEDRPVKRF
LRAGNKDGVVERDFYGHALSTWKVLTRSSMRPQEDEVELNPRARSVSMRV
GERTELMEDEVRSRVEAPPAGKGRGGGGEGGGEGGGIRPLGRKQRERQRL
MEEGGER*

mRNA from alignment at chr2:1215094..1217717-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G04490.1 ID=NO02G04490.1|Name=NO02G04490.1|organism=Nannochloropsis oceanica|type=mRNA|length=2624bp|location=Sequence derived from alignment at chr2:1215094..1217717- (Nannochloropsis oceanica)
ATGCTGCCCCGACGGGCAACGGCTACTCTATCTTTCCCCGGCACGACACG
GAGAGTTTCCGGTTCGGCTACCTTCCTCTTTCCTTCCTCTTCTGCCTTCT
CCTCCACCTCCCTCCACATCTCGCCCCGCATTAGCAGCAAACAGCGTCCT
CCAGCCCTCTTATCCCGATCCTTCTCAGAAGACAATGAGCCCAGCACATC
AGCCCTCGACCCCACTTTTGCAAGTGAATATCATGCCCCAGTCATGTGGC
GAGAGGTTCTTGATCATTTTATCACAGACCCACAAGGCCTTTACTTGGAT
TGTACGTTGGGTGGAGGAGGGCATTCGGAAGCAATTCTCACTCGATTGAA
GCAGCCTGGTGGGAAGCTGATTGCCTTAGATCAAGATCCTGATGCTTTGG
CTTTCGCGGGGAAACGTCTGAAAAGTCAGGAAGAAGAGGGGAGATTTCGG
GCGGTCAGGGCGAATTTCCGTGTGGCGAGTGAAGTACTGGTAGCGGAGGG
GTTGATGACGCCAGAGGCCGCCGAAGGGAGGGAACCAGGGCCATTTGCGG
GTAGGAGGGAGGAGGGAGGGAGGATGGAAGGGGGAGGGATGTAAGGAGGG
GGATAAATAAATGTTTTGAAAAACACTTAGTGCACTCATGTCAACATTCA
TTTTTGATAGGTATGCTTCTGGATTTGGGCGTTTCCTCGCATCAGCTTGA
TGAAGCTTCGAGGGTACGTTATGGAAAAGTGGGATTATCGTGGTTATTGT
TATAGATGCTTACAACCTACCCCGTCCCTCCTATCTTGCTTTCTTTCCTT
CCTCCCTTCCGTGGGGGCTGATAATCTACAGGGGTTTAGCTTCAGGGGTG
ATGGACCACTGGACATGCGCATGGAGGTGAGCATCATGGAAGTGAAGTCT
TACTTTAACAAGCGTTCTACCACTCTATTCCGGATGTTTGGTTGTGTACT
TATCTTCATATGTTCATGCGAGGATACTTGTCTATCAATCTTTTTTCTTA
TGGCATTTATATCCTTTCTAGGTTTCCCTGTGAATCCCTTGCCCTGCTGT
CTCATTCCTAGCCCGTCTTATATGTATCTTCTCCCTCCACCACATTCTCC
TCTCCTTCCCCCAGGGCCCCAACATCCACTCCTCCTCCTCCTCCTCCTCC
TCCTTCTCCTCCTCCTCCTCCCTCTCAGCCGACGAAATTGTGAACACTTG
GGAAGTAGGAGCAATATCGAAAGTACTCAAAGAGTACGGAGAGGAGCCGC
GTGCCTATAAATTGGCGCGGGCGATAGTGTCCGCCCGTCCACTCACTTCC
ACGGGACAGTTGAAGGAGGTGATTGAACGACACACGCCTTATACAGGTAA
TCGCAAATCCGCTGACCAATACACTTTAAATATGATAGGTATGAGATAAT
CAGCCGATAAAATTCCTTCACTCTCCTCACAATGGACATACAGAGAGGCC
TAAAGTCCTGGCACGTGTTTTTCAAGGCCTCCGCATCGCAGTAAACGGCG
AGATGGATGCTCTTGACTCCATCCTCTTCCAATCCACGCGCCTTGTACGA
CCAGGAGGGAGGCTTGTCGTCCTCTCTTACCATTCGCTCGAGGACCGCCC
CGTAAAAAGATTTTTAAGGGCCGGGAATAAAGACGGGGTCGTCGAACGTG
ATTTTTATGGACACGCCCTCAGCACATGGAAAGTACTCACACGCTCCTCC
ATGAGGCCGCAAGAAGATGAAGTTGAGCTCAATCCAAGGGCGAGAAGCGT
GAGTATGAGGGTGGGGGAAAGGACGGAGTTGATGGAGGACGAGGTACGGT
CGAGGGTGGAAGCCCCGCCGGCTGGGAAGGGAAGGGGAGGAGGAGGAGAA
GGAGGAGGAGAAGGAGGAGGGATAAGACCGTTGGGAAGAAAGCAACGCGA
GCGGCAGCGGTTGATGGAGGAGGGGGGGGAGAGGTAGGGAAGTCTTGGAA
ATAAGGAGGCATGGGAAGTCTTGAAAATAAGGAGGCGTGGGAAGTCTTGA
AAATAAGAGGAGAAGCAAATGCACGGGGGAGGGAGGTAAAGTATCGGCTG
GCGAGCTGTAGGGTGATACATACAGCGTATCTGTGGGGGTTAGGGTCAGG
ATGGGAAGGAAGTCAACAGATCGAGTGGAGGGAAAGTGTGAAAGAAGTGG
GAGGTTTTACGCCGGGCTGTGAAGTCAATACAGTGATGTATATACATTTG
AAGTCACTCACGCGCACACGACGTGAATATTGTCTACTACTCTAAACCGA
GACCCTGGTTCACGTTACTTTCCCCTCGGATTGCATAGGGCTTGTCAGTA
TTCCTTCAAGGGAGAGACGCAACTCACTGATATGCGTCTCGGGGCCTGGC
ATGTTCCGACTCGAGCGTCGGAAGAAAGGCTTCTCCGGGTAACCAATGCC
TCCGGACCCACTTTTCCCACAAAGCCAGAGTTATGTGTCTAATGTGTAGT
AAAATACTGTTTAAATACACCACTCTTTCGGCTCCCGAATGTTTGTGGAC
ATGTTGACTCGACGGTTCTGCGTCTCTGGAGGCCAAAAAGGAGGACGATC
TTTTTCAAGGATCGGCATGCCGCCGTGCGGCTGACTCGATTTACCGGTGC
GGTGCACTTCTTACCCACTTAAAA

Coding sequence (CDS) from alignment at chr2:1215094..1217717-

>NO02G04490.1 ID=NO02G04490.1|Name=NO02G04490.1|organism=Nannochloropsis oceanica|type=CDS|length=1374bp|location=Sequence derived from alignment at chr2:1215094..1217717- (Nannochloropsis oceanica)
ATGCTGCCCCGACGGGCAACGGCTACTCTATCTTTCCCCGGCACGACACG
GAGAGTTTCCGGTTCGGCTACCTTCCTCTTTCCTTCCTCTTCTGCCTTCT
CCTCCACCTCCCTCCACATCTCGCCCCGCATTAGCAGCAAACAGCGTCCT
CCAGCCCTCTTATCCCGATCCTTCTCAGAAGACAATGAGCCCAGCACATC
AGCCCTCGACCCCACTTTTGCAAGTGAATATCATGCCCCAGTCATGTGGC
GAGAGGTTCTTGATCATTTTATCACAGACCCACAAGGCCTTTACTTGGAT
TGTACGTTGGGTGGAGGAGGGCATTCGGAAGCAATTCTCACTCGATTGAA
GCAGCCTGGTGGGAAGCTGATTGCCTTAGATCAAGATCCTGATGCTTTGG
CTTTCGCGGGGAAACGTCTGAAAAGTCAGGAAGAAGAGGGGAGATTTCGG
GCGGTCAGGGCGAATTTCCGTGTGGCGAGTGAAGTACTGGTAGCGGAGGG
GTTGATGACGCCAGAGGCCGCCGAAGGGAGGGAACCAGGGCCATTTGCGG
GTATGCTTCTGGATTTGGGCGTTTCCTCGCATCAGCTTGATGAAGCTTCG
AGGGGGTTTAGCTTCAGGGGTGATGGACCACTGGACATGCGCATGGAGGG
CCCCAACATCCACTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCT
CCTCCCTCTCAGCCGACGAAATTGTGAACACTTGGGAAGTAGGAGCAATA
TCGAAAGTACTCAAAGAGTACGGAGAGGAGCCGCGTGCCTATAAATTGGC
GCGGGCGATAGTGTCCGCCCGTCCACTCACTTCCACGGGACAGTTGAAGG
AGGTGATTGAACGACACACGCCTTATACAGAGAGGCCTAAAGTCCTGGCA
CGTGTTTTTCAAGGCCTCCGCATCGCAGTAAACGGCGAGATGGATGCTCT
TGACTCCATCCTCTTCCAATCCACGCGCCTTGTACGACCAGGAGGGAGGC
TTGTCGTCCTCTCTTACCATTCGCTCGAGGACCGCCCCGTAAAAAGATTT
TTAAGGGCCGGGAATAAAGACGGGGTCGTCGAACGTGATTTTTATGGACA
CGCCCTCAGCACATGGAAAGTACTCACACGCTCCTCCATGAGGCCGCAAG
AAGATGAAGTTGAGCTCAATCCAAGGGCGAGAAGCGTGAGTATGAGGGTG
GGGGAAAGGACGGAGTTGATGGAGGACGAGGTACGGTCGAGGGTGGAAGC
CCCGCCGGCTGGGAAGGGAAGGGGAGGAGGAGGAGAAGGAGGAGGAGAAG
GAGGAGGGATAAGACCGTTGGGAAGAAAGCAACGCGAGCGGCAGCGGTTG
ATGGAGGAGGGGGGGGAGAGGTAG

Synonyms

Publications