NO02G03790.1, NO02G03790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03790.1
Unique NameNO02G03790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2416
Alignment locationchr2:1031332..1034112 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1031332..1034112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO02G03790.1 vs.
Match: CBN78115.1 (flagellar outer dynein arm light chain 2 [Ectocarpus siliculosus])

HSP 1 Score: 142.5 bits (358), Expect = 1.100e-30
Identity = 61/121 (50.41%), Postives = 90/121 (74.38%), Query Frame = 0 
Query:   35 VHILLPTYQLRPREDEKFSPAVAQRLAEQVLVDELKGKAYDDESVTNWAIVVADAVKKGVKAQNIPRFKVVVQVVLGEVREQGVWVASRCLWDSITDNHTSATFINESLWCTVLIFAVYTD 156
            V I+LPTY  +P EDEKF P+  + +AE+ +  EL+ K YD E    W++ +AD +++GVK  N+PR+K+VVQV +G++++QGV VASRCLWD+ TDN+ S  F N+SLWC+ ++F VYT+
Sbjct:   12 VEIVLPTYITKPSEDEKFYPSEVKAVAEKAVQVELQDKEYDGEEAKEWSLNIADTIREGVKTLNVPRYKIVVQVTIGQMKDQGVRVASRCLWDTATDNYASVQFKNQSLWCSAMVFGVYTE 132
The following BLAST results are available for this feature:
BLAST of NO02G03790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN78115.11.100e-3050.41flagellar outer dynein arm light chain 2 [Ectocarp... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03790NO02G03790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03790.1NO02G03790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03790.1.cds1NO02G03790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03790.1.cds2NO02G03790.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03790.1.cds3NO02G03790.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03790.1 ID=NO02G03790.1|Name=NO02G03790.1|organism=Nannochloropsis oceanica|type=mRNA|length=2416bp
AGGGATCAGAAAAGAAATGGCAGACATTCCAGCTAGCCCCTCGCCAGCAG
CAATACAAATATCACCGAGCATACCGCCAAAAGAAATGCAAGAAGGAAAA
GTCTCCGCGCATGCCGGCGTCCACATATTATTGCCCACATATCAGCTGCG
TCCGCGCGAGGATGAAAAGTTCTCCCCGGCTGTAGCGCAACGATTAGCGG
AGCAGGTGTTAGTAGATGAGTTGAAGGGGAAAGCTTATGACGATGAAAGT
GTGACGAATTGGGCCATCGTTGTCGCAGATGCGGTCAAGAAAGGGGTGAA
AGCACAAAATATACCAAGGTTCAAAGTTGTGGTGCAAGTCGTGTTGGGGG
AGGTGCGAGAGCAGGGAGTGTGGGTAGCTTCCCGGTGCTTGTGGGATTCG
ATCACCGACAATCACACCTCCGCAACATTTATTAATGAGAGCTTGTGGTG
TACTGTCTTGATTTTTGCTGTCTACACGGACTGAAAAAGATCGGGGGGTG
ATAAATAAAACGTCTGCGCTCTTGTCGATGCGTACATGCACAGCCCTAAA
ACAATAAAAGAAAAAAAGAAATACGAAGAGAAATGAAACGATGGGTGTTG
TCAGTAATCAAGCCGGGCATTTACTGTACATTCCCCCCGTTTTGTTCACA
TTGGTCTATCGGTCGCATGAACAGCCTTGCTTGTCAATTAGTGGTCATCT
TCGCTTTTTCCCGGGCATTCTTTTCGTAATTCGTCTATGCTACCGTACTG
ATGTCCGCAAAAGAGACAATAGCGGTGCTCCTGCCGCAAGTAAGCAGTCG
CCACGCTTAATTTCTCTGATGTGCTCAACGTGTCCCAAAGTTCGTGCTTG
CCATCTACTATAGCTAAGCCTTCTCTTTCTTCTTCTCCTCCACATTCCGT
TTGTCCCTGCGGCACGGCAGCGGCCGCCTCCTCTTGAGTATGCACTGTGT
GTGTTTCTGTTCCCGTGGCCAATAGGGCGTTAGATGGCTCGTCCACCCCC
TCCTTCCTTCGATCTCTGATCCTCGCATCCATCCCCTTGTTTTCCTCCTC
CTCTATGCTGGTCCACCACAAACAGGACATCTCCCGACCCGCCCGCGTAT
CTAAAGTTTCGATTGTCTTCATCGCCTTTGTCAAATTCGACGCAACGCGC
CGCTCCGCAAACCGATTAGACATGGCCACCTGGAAGTCTTCTTTGCATTG
CTCAAGAAGTTCAACCCGCGCCTGTGTCCATTGCTCCAGCCGCTGGTGCG
CTTCGCTCTGGCGCTCTGCCTGGCCAAGCCCCGCGCGGTCTGTCTTCTTT
ACCACGGCAATTGGCGCCGTGATACCGTCTGCGCTCTTGCCAATACCATG
GCCTTCCTTGTAGCCCATCAATTTCAGCATCCGCAACCCTACATTGTCCT
GTAAGGGTAAAGGAGGGGTGTAGAGCGAACATGAGAAGAGTTGAGGAGGG
CGGACAGATGGCCTGGAGAAGCGAGCGGCACGTCTCGAGGACAATCATTA
CCTGAGGCAATGGTGTATTCATTCCCTCTCGCAATTTCTCCTCCGCATTT
GCTGCCTTAGATTTTTTGGACGTTGCTTTAGAAGGCCGAGGCTGAACAGC
CCTCTTGCTACCAATGTTTGTGGTCGGCTGCTGGTCAACAAACGTACCGC
TCAAGTAGTCCTCATCATCATGGTAGCCATTGGGAAGAAGGCTCCTACTC
TGCTTTTCTGCCACCTCCAGCTGATCCTGCTTCCTTGTCTCCTTAAAACG
ATTCATGTGCTCACTGGACTCGTTCTTGACGTGTTATTCTATTCTCTATT
CTGTGATAGTCTGTGTCTGTCTTGGGGGAGGTTTGGGAGAGGGGATTGTG
TGTCTGTCTCTGTGTTTGTATCAGCGCGTGTCTGTGTCTGCATGTATGTG
TGTCTGTATACATGCCTGCCTTTGCGTTTGTCTGTTTATGGTTTTCTGTG
TATGTGTGGCTGTGTCTGTCTGTAATATGAAGGTGAGAGTCATGGTGAAA
AAGGTGCGACGGACCGTACGGAGCGTGGCGCACTCCATGACTTCGGCAGT
CTTCGTACACGAGTTAGTAGAGCGTGTTAACGGTAACTCGAGCCGCAAAG
TAACGAAGCCCTTGCGTGGGTGCAAGCGTCCTCGCACCTCGAAGGCCTCG
ATTTCTGGCCGACCGTGACCTCGTTTACCCCCACGACACGGGGCAGTGAG
CCGGCGCGCCAACGCGTTTCTTGGGCGGCCCTGAAGGCTGAGGCGTGTGG
AAAAGTCGTTTTTGGATCTCGAGGAGCATGGAACGAGTAAAACATGCAGC
TCTTGTGGTCAGGCGAACAGAATGCTATGGAACACCAAAGTCTAAAAATG
TCCACATTGTGGAAATGAAGAAGAGGGGGACGTCAACTCGGCCAAGAAGG
CTCTCATAAAGGTGTT
back to top

protein sequence of NO02G03790.1

>NO02G03790.1-protein ID=NO02G03790.1-protein|Name=NO02G03790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=156bp
MADIPASPSPAAIQISPSIPPKEMQEGKVSAHAGVHILLPTYQLRPREDE
KFSPAVAQRLAEQVLVDELKGKAYDDESVTNWAIVVADAVKKGVKAQNIP
RFKVVVQVVLGEVREQGVWVASRCLWDSITDNHTSATFINESLWCTVLIF
AVYTD*
back to top

mRNA from alignment at chr2:1031332..1034112+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03790.1 ID=NO02G03790.1|Name=NO02G03790.1|organism=Nannochloropsis oceanica|type=mRNA|length=2781bp|location=Sequence derived from alignment at chr2:1031332..1034112+ (Nannochloropsis oceanica)
AGGGATCAGAAAAGAAATGGCAGACATTCCAGCTAGCCCCTCGCCAGCAG
CAATACAAATATCACCGAGCATACCGCCAAAAGAAATGCAAGAAGGAAAA
GTCTCCGCGCATGCCGGCGTCCACATATTATTGCCCACATATCAGCTGCG
TCCGCGCGAGGATGAAAAGTTCTCCCCGGCTGTAGCGCAACGATTAGCGG
AGCAGGTGTTAGTAGATGAGTTGAAGGGGAAAGCTTATGACGATGAAAGT
GTGACGAATTGGGCCATCGTTGTCGCAGATGCGGTCAAGAAAGGGGTGAA
AGGTGGGCTTGATCGAAGGGGAGGGAGGAGAGGATCCAGGATACGGTGGG
CGGATAGGAAGCTTAATGTCTGTCTAATTAGTAGCTAGGCAGAAAGTATA
CATATCCAGTAAAAAAATCTTGTATTCACATATATATACTTCATATTCCA
TCAAAGCACAAAATATACCAAGGTTCAAAGTTGTGGTGCAAGTCGTGTTG
GGGGAGGTGCGAGAGCAGGGAGTGTGGGTAGCTTCCCGGTGCTTGTGGGA
TTCGATCACCGACAATCACACCTCCGCAACATTTATTAATGTACGTTTTA
AAAGAGCGACGCTTTTGGTCGCGACAAAGAGCTAATAAATATGCCCTAAA
TATTACTACTTCGCTCACCCATATCCTTGCTACCTCGCTCACCTATAACC
TTATCCTTATATCCTTATCCTCATATCGTTATCCTTAATCCTTATTCACT
ATCTATCTATCCTTATCCTTACATTCTAAACTTATTTTCCGCCACCCACA
GGAGAGCTTGTGGTGTACTGTCTTGATTTTTGCTGTCTACACGGACTGAA
AAAGATCGGGGGGTGATAAATAAAACGTCTGCGCTCTTGTCGATGCGTAC
ATGCACAGCCCTAAAACAATAAAAGAAAAAAAGAAATACGAAGAGAAATG
AAACGATGGGTGTTGTCAGTAATCAAGCCGGGCATTTACTGTACATTCCC
CCCGTTTTGTTCACATTGGTCTATCGGTCGCATGAACAGCCTTGCTTGTC
AATTAGTGGTCATCTTCGCTTTTTCCCGGGCATTCTTTTCGTAATTCGTC
TATGCTACCGTACTGATGTCCGCAAAAGAGACAATAGCGGTGCTCCTGCC
GCAAGTAAGCAGTCGCCACGCTTAATTTCTCTGATGTGCTCAACGTGTCC
CAAAGTTCGTGCTTGCCATCTACTATAGCTAAGCCTTCTCTTTCTTCTTC
TCCTCCACATTCCGTTTGTCCCTGCGGCACGGCAGCGGCCGCCTCCTCTT
GAGTATGCACTGTGTGTGTTTCTGTTCCCGTGGCCAATAGGGCGTTAGAT
GGCTCGTCCACCCCCTCCTTCCTTCGATCTCTGATCCTCGCATCCATCCC
CTTGTTTTCCTCCTCCTCTATGCTGGTCCACCACAAACAGGACATCTCCC
GACCCGCCCGCGTATCTAAAGTTTCGATTGTCTTCATCGCCTTTGTCAAA
TTCGACGCAACGCGCCGCTCCGCAAACCGATTAGACATGGCCACCTGGAA
GTCTTCTTTGCATTGCTCAAGAAGTTCAACCCGCGCCTGTGTCCATTGCT
CCAGCCGCTGGTGCGCTTCGCTCTGGCGCTCTGCCTGGCCAAGCCCCGCG
CGGTCTGTCTTCTTTACCACGGCAATTGGCGCCGTGATACCGTCTGCGCT
CTTGCCAATACCATGGCCTTCCTTGTAGCCCATCAATTTCAGCATCCGCA
ACCCTACATTGTCCTGTAAGGGTAAAGGAGGGGTGTAGAGCGAACATGAG
AAGAGTTGAGGAGGGCGGACAGATGGCCTGGAGAAGCGAGCGGCACGTCT
CGAGGACAATCATTACCTGAGGCAATGGTGTATTCATTCCCTCTCGCAAT
TTCTCCTCCGCATTTGCTGCCTTAGATTTTTTGGACGTTGCTTTAGAAGG
CCGAGGCTGAACAGCCCTCTTGCTACCAATGTTTGTGGTCGGCTGCTGGT
CAACAAACGTACCGCTCAAGTAGTCCTCATCATCATGGTAGCCATTGGGA
AGAAGGCTCCTACTCTGCTTTTCTGCCACCTCCAGCTGATCCTGCTTCCT
TGTCTCCTTAAAACGATTCATGTGCTCACTGGACTCGTTCTTGACGTGTT
ATTCTATTCTCTATTCTGTGATAGTCTGTGTCTGTCTTGGGGGAGGTTTG
GGAGAGGGGATTGTGTGTCTGTCTCTGTGTTTGTATCAGCGCGTGTCTGT
GTCTGCATGTATGTGTGTCTGTATACATGCCTGCCTTTGCGTTTGTCTGT
TTATGGTTTTCTGTGTATGTGTGGCTGTGTCTGTCTGTAATATGAAGGTG
AGAGTCATGGTGAAAAAGGTGCGACGGACCGTACGGAGCGTGGCGCACTC
CATGACTTCGGCAGTCTTCGTACACGAGTTAGTAGAGCGTGTTAACGGTA
ACTCGAGCCGCAAAGTAACGAAGCCCTTGCGTGGGTGCAAGCGTCCTCGC
ACCTCGAAGGCCTCGATTTCTGGCCGACCGTGACCTCGTTTACCCCCACG
ACACGGGGCAGTGAGCCGGCGCGCCAACGCGTTTCTTGGGCGGCCCTGAA
GGCTGAGGCGTGTGGAAAAGTCGTTTTTGGATCTCGAGGAGCATGGAACG
AGTAAAACATGCAGCTCTTGTGGTCAGGCGAACAGAATGCTATGGAACAC
CAAAGTCTAAAAATGTCCACATTGTGGAAATGAAGAAGAGGGGGACGTCA
ACTCGGCCAAGAAGGCTCTCATAAAGGTGTT
back to top

Coding sequence (CDS) from alignment at chr2:1031332..1034112+

>NO02G03790.1 ID=NO02G03790.1|Name=NO02G03790.1|organism=Nannochloropsis oceanica|type=CDS|length=468bp|location=Sequence derived from alignment at chr2:1031332..1034112+ (Nannochloropsis oceanica)
ATGGCAGACATTCCAGCTAGCCCCTCGCCAGCAGCAATACAAATATCACC
GAGCATACCGCCAAAAGAAATGCAAGAAGGAAAAGTCTCCGCGCATGCCG
GCGTCCACATATTATTGCCCACATATCAGCTGCGTCCGCGCGAGGATGAA
AAGTTCTCCCCGGCTGTAGCGCAACGATTAGCGGAGCAGGTGTTAGTAGA
TGAGTTGAAGGGGAAAGCTTATGACGATGAAAGTGTGACGAATTGGGCCA
TCGTTGTCGCAGATGCGGTCAAGAAAGGGGTGAAAGCACAAAATATACCA
AGGTTCAAAGTTGTGGTGCAAGTCGTGTTGGGGGAGGTGCGAGAGCAGGG
AGTGTGGGTAGCTTCCCGGTGCTTGTGGGATTCGATCACCGACAATCACA
CCTCCGCAACATTTATTAATGAGAGCTTGTGGTGTACTGTCTTGATTTTT
GCTGTCTACACGGACTGA
back to top
Synonyms
Publications