|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr2 | genome | chr2:769282..771489 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G02860.1 vs.
Match: EWM30364.1 (nuclear pore complex protein nup98-nup96 isoform 1 [Nannochloropsis gaditana]) HSP 1 Score: 810.4 bits (2092), Expect = 4.400e-231 Identity = 439/745 (58.93%), Postives = 517/745 (69.40%), Query Frame = 0
Query: 7 KEGGREGGKEG---YLGPLRVHKEYAQRVQEATATRAPRAALCSWLLPPSTPGGQHQEQQEQQQQQQQHRIVDLYYHLVQCMHALAREAGGREDETSRQTWELVNALWGQEGGNKSRPLPLSGSLGGISQALLEGGANHTDWERRRQAVCRWLKCAVRVESEGTPLEASGDETADLHAVLELMKSHRITEAATLAAQSGFLRLATLIPLAGHRPGIDMMRHQEALRLQLQESGLAAIFGLLSGVGSEGEGRKEGG---GLDWMRRLGEYLWFATGNLPTGGGGGGA---ETDRLIAAIEEFNEKMPSPPLPGWLRKRWEGGRG-GWHDARVGPNSLFFDLLQMYRSEAYPLALLLDPRGLTENERDYRMSWLLLTLLGALGVVPPGTGEGGKKGVGEGGGGGAAAAEIWQQVTSSLVFQLVSVGMWEWAVYVLMHAPETPARTRSIRELVGRFGWGCVRGGEEWSFLVDELGLPFEWLEEARATWLRSEGVLFLDEGGREGGEGDDALGHFLAGGKWREASEILMNVVAPRLLNDDRGQQLRVLLGRLFAADGTGAVGGAGAAAAAT-NRGNRALWAYLDFLENM-HRE----SMSVESFARMEDELVAILPSLVQGGKGADRNSCFAWRGEILGPEEAGTERDMYAVRRREGVREEEEDLVPPPLHAIRNMVLTDIIKKIYSLHRAQVREEAGKEGGWEGRASLFPSKTQVCRLEDMCQDYALHQVSSLTIEFIAANLDGGGVF 736
+E G +GG EG YLGPL VHK +A+ V+ A+ TRAPRA + GG V LY+H+V C+HALA EA RED+ SRQTWEL NALWGQEGG K+RPLPLSGSLG + Q LL GA+H DWERR QAVCRWLK VR E E P+ SGDE+ADL AVL+LMKSHRIT+AA+LA++SGFLRLATLIPLAGH+P D +R Q ALR +Q+ LAAI+GLLSG GSE + G GLDWMRRLGEY+WF T G G GA +TDRLI AIE F+++MPSPPLP WLR RWE GRG WHDARVGPNSLF+DLLQMYRSEAYPL+L+LDPRGLTENERDYR+SWL+LTLLGAL + P E + AA +IW +VTSSLVFQLV +G+W WAVYVL+HAPETPART ++++LVGRFGW G +WSFLVDELG+P WLE+ARAT+LR++GVLFLDEG +G DDALGHFL G + A+E++MNVVAPRLL DDRG +L LL + G AT N GN+A WAYL+ LE + H E + A E++L+AILPSLV GG+G DRN CF W E L P EAG DMYA R G R D +PPPLHAIRNMVLTD+IKK++ HR Q RE + E G R+ L P K+Q+CRLEDMCQDYAL QV LT +FIA LDG VF
Sbjct: 436 EEAGTKGGVEGLRGYLGPLGVHKAFARGVEPASETRAPRAGFRA--------GGSPATGDVD---------VGLYHHMVDCLHALATEATRREDDASRQTWELFNALWGQEGGGKARPLPLSGSLGALCQVLLPDGASHNDWERRCQAVCRWLKRIVRREVEDLPVRGSGDESADLRAVLDLMKSHRITDAASLASKSGFLRLATLIPLAGHKPATDYLRQQPALRRTVQDPALAAIYGLLSGTGSEANETSDEGPKAGLDWMRRLGEYMWFKTDGRSPGAGSAGAGDDDTDRLILAIEAFDDEMPSPPLPAWLRARWERGRGRAWHDARVGPNSLFYDLLQMYRSEAYPLSLVLDPRGLTENERDYRLSWLMLTLLGALSIGHPTGPEAVE-----------AATQIWMRVTSSLVFQLVGMGLWPWAVYVLLHAPETPARTDAVKDLVGRFGWAFQPGSTDWSFLVDELGVPAAWLEDARATYLRAQGVLFLDEG--KGASADDALGHFLRAGDTKAAAELIMNVVAPRLLIDDRGPELHALLAGFLGPE-------RGELTDATINSGNKACWAYLEVLEALRHLEDSWGEKEAPAPAHFEEQLMAILPSLVDGGQGGDRNGCFNWCAERLDPGEAGRVIDMYAQR---GSR-SAPDSMPPPLHAIRNMVLTDVIKKLFFFHRLQARERSMWEEGMAPRSCL-PGKSQLCRLEDMCQDYALQQVGCLTSDFIARRLDGDEVF 1138
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G02860.1 ID=NO02G02860.1|Name=NO02G02860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2208bp
ATGGGGGCCACTTTGCTCAAGGAGGGAGGGAGGGAGGGAGGGAAGGAGGG
GTATCTGGGTCCGTTGAGAGTCCATAAGGAGTATGCACAGCGAGTGCAGG
AGGCGACGGCCACGCGGGCGCCACGGGCAGCGCTTTGTTCGTGGCTGCTT
CCTCCTTCCACTCCAGGCGGGCAACACCAAGAGCAACAAGAGCAGCAGCA
GCAGCAGCAGCAGCATAGGATTGTGGATCTGTATTATCATTTGGTGCAGT
GCATGCATGCTCTCGCCAGAGAGGCTGGTGGTCGGGAGGATGAAACGAGC
CGGCAGACGTGGGAGCTGGTGAATGCCTTGTGGGGTCAGGAAGGGGGAAA
TAAATCGAGACCCTTGCCTTTGTCCGGTTCATTAGGGGGGATAAGCCAGG
CGTTGCTCGAGGGAGGGGCGAATCACACAGACTGGGAACGACGACGGCAG
GCGGTGTGTCGGTGGTTGAAATGCGCGGTGAGGGTCGAGTCGGAAGGGAC
GCCCCTCGAAGCCTCGGGGGATGAAACGGCCGACTTGCATGCAGTCTTGG
AATTGATGAAATCCCATCGCATTACAGAAGCTGCGACGCTGGCCGCTCAA
AGTGGGTTTTTGAGGTTGGCGACTCTGATTCCTCTGGCGGGGCATCGGCC
GGGGATTGATATGATGAGGCATCAAGAGGCGCTGCGGCTTCAGTTGCAGG
AGTCGGGGTTAGCGGCAATATTCGGGTTGTTGAGTGGGGTGGGGAGTGAG
GGGGAGGGAAGAAAGGAAGGTGGGGGATTGGACTGGATGAGGCGGTTGGG
GGAGTATCTGTGGTTTGCGACCGGGAACTTGCCAACGGGGGGGGGGGGCG
GGGGAGCGGAGACGGATAGATTGATTGCGGCGATCGAGGAATTCAACGAA
AAGATGCCCTCGCCGCCGTTGCCTGGATGGTTGAGGAAGAGGTGGGAGGG
AGGGAGGGGTGGGTGGCATGACGCTCGTGTGGGGCCGAATTCGTTGTTTT
TTGATTTGCTGCAGATGTATCGTTCGGAAGCGTACCCGTTGGCGTTACTG
CTGGACCCGCGGGGGTTGACGGAGAATGAGCGAGACTACCGTATGTCATG
GTTGTTGCTTACCTTGCTGGGTGCTTTGGGGGTTGTTCCACCGGGTACGG
GAGAGGGAGGCAAGAAAGGAGTGGGAGAAGGAGGGGGAGGAGGAGCAGCA
GCTGCGGAGATTTGGCAGCAGGTGACTTCTAGTTTGGTGTTCCAGTTAGT
GAGTGTGGGCATGTGGGAGTGGGCCGTGTATGTGTTGATGCATGCGCCAG
AGACCCCGGCGCGGACGAGGAGCATCCGGGAACTGGTTGGGCGGTTTGGC
TGGGGTTGTGTAAGGGGGGGGGAGGAATGGAGTTTTTTGGTGGACGAGTT
GGGGTTGCCTTTCGAGTGGTTGGAGGAGGCAAGGGCGACGTGGCTGAGGA
GCGAAGGAGTGTTGTTTTTGGACGAAGGAGGGAGGGAGGGAGGGGAGGGA
GATGATGCCCTGGGGCATTTCCTGGCGGGGGGGAAGTGGAGGGAGGCGAG
TGAAATTCTCATGAATGTGGTTGCCCCACGCTTGTTGAACGATGACCGAG
GCCAGCAGTTGCGGGTGTTGCTGGGTCGCCTCTTTGCTGCCGATGGGACG
GGTGCTGTTGGTGGTGCAGGTGCGGCGGCAGCGGCGACCAACCGTGGCAA
TAGGGCATTATGGGCCTACTTGGATTTTTTGGAGAACATGCACCGAGAGT
CGATGTCGGTAGAGAGCTTTGCGCGAATGGAAGACGAGCTGGTGGCTATC
CTGCCGAGTTTGGTTCAGGGGGGCAAGGGGGCAGATCGGAACAGCTGCTT
TGCTTGGAGGGGGGAAATTCTTGGGCCGGAGGAAGCGGGGACAGAGAGGG
ATATGTACGCGGTGAGAAGGAGGGAAGGAGTGAGGGAGGAGGAGGAGGAT
TTGGTTCCGCCGCCGTTGCATGCGATTCGGAATATGGTCTTGACGGACAT
TATTAAAAAGATTTACTCGCTGCATCGGGCTCAGGTTAGAGAGGAGGCAG
GGAAGGAGGGTGGATGGGAAGGAAGGGCGAGCCTATTTCCGAGCAAGACG
CAAGTATGTCGGTTGGAGGATATGTGCCAGGATTATGCTTTGCATCAGGT
CAGTTCTCTGACGATTGAATTCATTGCGGCGAACTTGGACGGTGGTGGGG
TGTTCTAG back to topprotein sequence of NO02G02860.1 >NO02G02860.1-protein ID=NO02G02860.1-protein|Name=NO02G02860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=736bp
MGATLLKEGGREGGKEGYLGPLRVHKEYAQRVQEATATRAPRAALCSWLL
PPSTPGGQHQEQQEQQQQQQQHRIVDLYYHLVQCMHALAREAGGREDETS
RQTWELVNALWGQEGGNKSRPLPLSGSLGGISQALLEGGANHTDWERRRQ
AVCRWLKCAVRVESEGTPLEASGDETADLHAVLELMKSHRITEAATLAAQ
SGFLRLATLIPLAGHRPGIDMMRHQEALRLQLQESGLAAIFGLLSGVGSE
GEGRKEGGGLDWMRRLGEYLWFATGNLPTGGGGGGAETDRLIAAIEEFNE
KMPSPPLPGWLRKRWEGGRGGWHDARVGPNSLFFDLLQMYRSEAYPLALL
LDPRGLTENERDYRMSWLLLTLLGALGVVPPGTGEGGKKGVGEGGGGGAA
AAEIWQQVTSSLVFQLVSVGMWEWAVYVLMHAPETPARTRSIRELVGRFG
WGCVRGGEEWSFLVDELGLPFEWLEEARATWLRSEGVLFLDEGGREGGEG
DDALGHFLAGGKWREASEILMNVVAPRLLNDDRGQQLRVLLGRLFAADGT
GAVGGAGAAAAATNRGNRALWAYLDFLENMHRESMSVESFARMEDELVAI
LPSLVQGGKGADRNSCFAWRGEILGPEEAGTERDMYAVRRREGVREEEED
LVPPPLHAIRNMVLTDIIKKIYSLHRAQVREEAGKEGGWEGRASLFPSKT
QVCRLEDMCQDYALHQVSSLTIEFIAANLDGGGVF* back to topmRNA from alignment at chr2:769282..771489- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G02860.1 ID=NO02G02860.1|Name=NO02G02860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2208bp|location=Sequence derived from alignment at chr2:769282..771489- (Nannochloropsis oceanica)
ATGGGGGCCACTTTGCTCAAGGAGGGAGGGAGGGAGGGAGGGAAGGAGGG
GTATCTGGGTCCGTTGAGAGTCCATAAGGAGTATGCACAGCGAGTGCAGG
AGGCGACGGCCACGCGGGCGCCACGGGCAGCGCTTTGTTCGTGGCTGCTT
CCTCCTTCCACTCCAGGCGGGCAACACCAAGAGCAACAAGAGCAGCAGCA
GCAGCAGCAGCAGCATAGGATTGTGGATCTGTATTATCATTTGGTGCAGT
GCATGCATGCTCTCGCCAGAGAGGCTGGTGGTCGGGAGGATGAAACGAGC
CGGCAGACGTGGGAGCTGGTGAATGCCTTGTGGGGTCAGGAAGGGGGAAA
TAAATCGAGACCCTTGCCTTTGTCCGGTTCATTAGGGGGGATAAGCCAGG
CGTTGCTCGAGGGAGGGGCGAATCACACAGACTGGGAACGACGACGGCAG
GCGGTGTGTCGGTGGTTGAAATGCGCGGTGAGGGTCGAGTCGGAAGGGAC
GCCCCTCGAAGCCTCGGGGGATGAAACGGCCGACTTGCATGCAGTCTTGG
AATTGATGAAATCCCATCGCATTACAGAAGCTGCGACGCTGGCCGCTCAA
AGTGGGTTTTTGAGGTTGGCGACTCTGATTCCTCTGGCGGGGCATCGGCC
GGGGATTGATATGATGAGGCATCAAGAGGCGCTGCGGCTTCAGTTGCAGG
AGTCGGGGTTAGCGGCAATATTCGGGTTGTTGAGTGGGGTGGGGAGTGAG
GGGGAGGGAAGAAAGGAAGGTGGGGGATTGGACTGGATGAGGCGGTTGGG
GGAGTATCTGTGGTTTGCGACCGGGAACTTGCCAACGGGGGGGGGGGGCG
GGGGAGCGGAGACGGATAGATTGATTGCGGCGATCGAGGAATTCAACGAA
AAGATGCCCTCGCCGCCGTTGCCTGGATGGTTGAGGAAGAGGTGGGAGGG
AGGGAGGGGTGGGTGGCATGACGCTCGTGTGGGGCCGAATTCGTTGTTTT
TTGATTTGCTGCAGATGTATCGTTCGGAAGCGTACCCGTTGGCGTTACTG
CTGGACCCGCGGGGGTTGACGGAGAATGAGCGAGACTACCGTATGTCATG
GTTGTTGCTTACCTTGCTGGGTGCTTTGGGGGTTGTTCCACCGGGTACGG
GAGAGGGAGGCAAGAAAGGAGTGGGAGAAGGAGGGGGAGGAGGAGCAGCA
GCTGCGGAGATTTGGCAGCAGGTGACTTCTAGTTTGGTGTTCCAGTTAGT
GAGTGTGGGCATGTGGGAGTGGGCCGTGTATGTGTTGATGCATGCGCCAG
AGACCCCGGCGCGGACGAGGAGCATCCGGGAACTGGTTGGGCGGTTTGGC
TGGGGTTGTGTAAGGGGGGGGGAGGAATGGAGTTTTTTGGTGGACGAGTT
GGGGTTGCCTTTCGAGTGGTTGGAGGAGGCAAGGGCGACGTGGCTGAGGA
GCGAAGGAGTGTTGTTTTTGGACGAAGGAGGGAGGGAGGGAGGGGAGGGA
GATGATGCCCTGGGGCATTTCCTGGCGGGGGGGAAGTGGAGGGAGGCGAG
TGAAATTCTCATGAATGTGGTTGCCCCACGCTTGTTGAACGATGACCGAG
GCCAGCAGTTGCGGGTGTTGCTGGGTCGCCTCTTTGCTGCCGATGGGACG
GGTGCTGTTGGTGGTGCAGGTGCGGCGGCAGCGGCGACCAACCGTGGCAA
TAGGGCATTATGGGCCTACTTGGATTTTTTGGAGAACATGCACCGAGAGT
CGATGTCGGTAGAGAGCTTTGCGCGAATGGAAGACGAGCTGGTGGCTATC
CTGCCGAGTTTGGTTCAGGGGGGCAAGGGGGCAGATCGGAACAGCTGCTT
TGCTTGGAGGGGGGAAATTCTTGGGCCGGAGGAAGCGGGGACAGAGAGGG
ATATGTACGCGGTGAGAAGGAGGGAAGGAGTGAGGGAGGAGGAGGAGGAT
TTGGTTCCGCCGCCGTTGCATGCGATTCGGAATATGGTCTTGACGGACAT
TATTAAAAAGATTTACTCGCTGCATCGGGCTCAGGTTAGAGAGGAGGCAG
GGAAGGAGGGTGGATGGGAAGGAAGGGCGAGCCTATTTCCGAGCAAGACG
CAAGTATGTCGGTTGGAGGATATGTGCCAGGATTATGCTTTGCATCAGGT
CAGTTCTCTGACGATTGAATTCATTGCGGCGAACTTGGACGGTGGTGGGG
TGTTCTAG back to topCoding sequence (CDS) from alignment at chr2:769282..771489- >NO02G02860.1 ID=NO02G02860.1|Name=NO02G02860.1|organism=Nannochloropsis oceanica|type=CDS|length=2208bp|location=Sequence derived from alignment at chr2:769282..771489- (Nannochloropsis oceanica)
ATGGGGGCCACTTTGCTCAAGGAGGGAGGGAGGGAGGGAGGGAAGGAGGG
GTATCTGGGTCCGTTGAGAGTCCATAAGGAGTATGCACAGCGAGTGCAGG
AGGCGACGGCCACGCGGGCGCCACGGGCAGCGCTTTGTTCGTGGCTGCTT
CCTCCTTCCACTCCAGGCGGGCAACACCAAGAGCAACAAGAGCAGCAGCA
GCAGCAGCAGCAGCATAGGATTGTGGATCTGTATTATCATTTGGTGCAGT
GCATGCATGCTCTCGCCAGAGAGGCTGGTGGTCGGGAGGATGAAACGAGC
CGGCAGACGTGGGAGCTGGTGAATGCCTTGTGGGGTCAGGAAGGGGGAAA
TAAATCGAGACCCTTGCCTTTGTCCGGTTCATTAGGGGGGATAAGCCAGG
CGTTGCTCGAGGGAGGGGCGAATCACACAGACTGGGAACGACGACGGCAG
GCGGTGTGTCGGTGGTTGAAATGCGCGGTGAGGGTCGAGTCGGAAGGGAC
GCCCCTCGAAGCCTCGGGGGATGAAACGGCCGACTTGCATGCAGTCTTGG
AATTGATGAAATCCCATCGCATTACAGAAGCTGCGACGCTGGCCGCTCAA
AGTGGGTTTTTGAGGTTGGCGACTCTGATTCCTCTGGCGGGGCATCGGCC
GGGGATTGATATGATGAGGCATCAAGAGGCGCTGCGGCTTCAGTTGCAGG
AGTCGGGGTTAGCGGCAATATTCGGGTTGTTGAGTGGGGTGGGGAGTGAG
GGGGAGGGAAGAAAGGAAGGTGGGGGATTGGACTGGATGAGGCGGTTGGG
GGAGTATCTGTGGTTTGCGACCGGGAACTTGCCAACGGGGGGGGGGGGCG
GGGGAGCGGAGACGGATAGATTGATTGCGGCGATCGAGGAATTCAACGAA
AAGATGCCCTCGCCGCCGTTGCCTGGATGGTTGAGGAAGAGGTGGGAGGG
AGGGAGGGGTGGGTGGCATGACGCTCGTGTGGGGCCGAATTCGTTGTTTT
TTGATTTGCTGCAGATGTATCGTTCGGAAGCGTACCCGTTGGCGTTACTG
CTGGACCCGCGGGGGTTGACGGAGAATGAGCGAGACTACCGTATGTCATG
GTTGTTGCTTACCTTGCTGGGTGCTTTGGGGGTTGTTCCACCGGGTACGG
GAGAGGGAGGCAAGAAAGGAGTGGGAGAAGGAGGGGGAGGAGGAGCAGCA
GCTGCGGAGATTTGGCAGCAGGTGACTTCTAGTTTGGTGTTCCAGTTAGT
GAGTGTGGGCATGTGGGAGTGGGCCGTGTATGTGTTGATGCATGCGCCAG
AGACCCCGGCGCGGACGAGGAGCATCCGGGAACTGGTTGGGCGGTTTGGC
TGGGGTTGTGTAAGGGGGGGGGAGGAATGGAGTTTTTTGGTGGACGAGTT
GGGGTTGCCTTTCGAGTGGTTGGAGGAGGCAAGGGCGACGTGGCTGAGGA
GCGAAGGAGTGTTGTTTTTGGACGAAGGAGGGAGGGAGGGAGGGGAGGGA
GATGATGCCCTGGGGCATTTCCTGGCGGGGGGGAAGTGGAGGGAGGCGAG
TGAAATTCTCATGAATGTGGTTGCCCCACGCTTGTTGAACGATGACCGAG
GCCAGCAGTTGCGGGTGTTGCTGGGTCGCCTCTTTGCTGCCGATGGGACG
GGTGCTGTTGGTGGTGCAGGTGCGGCGGCAGCGGCGACCAACCGTGGCAA
TAGGGCATTATGGGCCTACTTGGATTTTTTGGAGAACATGCACCGAGAGT
CGATGTCGGTAGAGAGCTTTGCGCGAATGGAAGACGAGCTGGTGGCTATC
CTGCCGAGTTTGGTTCAGGGGGGCAAGGGGGCAGATCGGAACAGCTGCTT
TGCTTGGAGGGGGGAAATTCTTGGGCCGGAGGAAGCGGGGACAGAGAGGG
ATATGTACGCGGTGAGAAGGAGGGAAGGAGTGAGGGAGGAGGAGGAGGAT
TTGGTTCCGCCGCCGTTGCATGCGATTCGGAATATGGTCTTGACGGACAT
TATTAAAAAGATTTACTCGCTGCATCGGGCTCAGGTTAGAGAGGAGGCAG
GGAAGGAGGGTGGATGGGAAGGAAGGGCGAGCCTATTTCCGAGCAAGACG
CAAGTATGTCGGTTGGAGGATATGTGCCAGGATTATGCTTTGCATCAGGT
CAGTTCTCTGACGATTGAATTCATTGCGGCGAACTTGGACGGTGGTGGGG
TGTTCTAG back to top
|