NO02G02020.1, NO02G02020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02020.1
Unique NameNO02G02020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length882
Alignment locationchr2:575940..577732 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:575940..577732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02020.1 vs.
Match: EWM30447.1 (cop9 signalosome complex subunit 7a [Nannochloropsis gaditana])

HSP 1 Score: 343.2 bits (879), Expect = 8.000e-91
Identity = 191/293 (65.19%), Postives = 224/293 (76.45%), Query Frame = 0 
Query:    1 MNSDAGAGALEQFTILAKGTKGNGCAALIQQVLSTRKIVVFGELLAMQSMQALRGTEHEPSLKLLEIFAYGTYADYQNQRTTANLPELTTPQLRKLRLLTMLTLAHKHESIPYATLFQALGLDGNVREVEDLIIEAIYMGFLSGRLDQRRGLFRVKGAVGRDVRLEDVEGMIGKLRKWLGNAEMLLENFEERMRDIHAGRAELQQQRHKYVQQFEQVKTQLNTGVQPYRGGGGGGGGVGGFDGMDGYDDIEAFFPGEGVGGGGGGVGGRRKSAAEGRFKRKSNREPTSRPRNK 294
            MNSDAGAGALEQFTILAK  KGN C ALIQQVLSTRKIVVFGELLAM +++ALRG+EHEP L+LLEIFAYGTYADYQ QR T  LP LT PQLRKL+ LT++TLA KHE+IPYA LF+ L +DG+VRE+EDLIIE+I MG L+GRLDQR G FR+KGA+GRDVRLED++GM+ KL+KW+ NAE LL + E+RM +IH  R EL QQR  Y ++ +  K        P RG  GGGGG GGF G+D  DD+E+F          G  GGRRK A+EGR+KRK  REP SR RNK
Sbjct:    1 MNSDAGAGALEQFTILAKSAKGNACVALIQQVLSTRKIVVFGELLAMPNLEALRGSEHEPYLRLLEIFAYGTYADYQRQRGT--LPPLTPPQLRKLQQLTLVTLAQKHENIPYAVLFRELDMDGDVRELEDLIIESINMGLLTGRLDQRGGRFRIKGAIGRDVRLEDIDGMMDKLQKWVANAETLLTSLEQRMSEIHDERCELDQQRQDYKEKLQHAK------AHPVRGVRGGGGGAGGFGGLDD-DDMESFLT-------AGASGGRRKVASEGRYKRKGVREPMSRMRNK 277
The following BLAST results are available for this feature:
BLAST of NO02G02020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30447.18.000e-9165.19cop9 signalosome complex subunit 7a [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02020NO02G02020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02020.1NO02G02020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02020.1.cds1NO02G02020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02020.1.cds2NO02G02020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02020.1.cds3NO02G02020.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02020.1.cds4NO02G02020.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02020.1.cds5NO02G02020.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02020.1.cds6NO02G02020.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02020.1.cds7NO02G02020.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02020.1 ID=NO02G02020.1|Name=NO02G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=882bp
ATGAACTCGGACGCGGGCGCGGGGGCCTTGGAGCAGTTTACCATCCTGGC
CAAGGGAACAAAAGGAAATGGCTGTGCGGCGCTCATCCAGCAGGTCCTAT
CCACGCGCAAGATAGTCGTCTTTGGGGAGCTGTTGGCCATGCAGAGCATG
CAAGCGTTACGGGGTACGGAGCATGAGCCCTCCCTTAAGCTTCTGGAGAT
TTTTGCCTACGGGACCTATGCCGACTATCAGAACCAACGCACGACCGCTA
ATCTTCCCGAGCTGACGACGCCGCAGCTCCGCAAGCTCCGGCTGTTGACC
ATGCTGACCTTGGCACACAAGCACGAGAGCATCCCTTACGCCACCCTCTT
CCAAGCACTCGGCCTTGACGGCAATGTCCGCGAGGTCGAAGACCTGATCA
TTGAGGCCATATACATGGGCTTTCTATCCGGGAGGTTGGATCAACGCCGC
GGCCTGTTTCGAGTGAAGGGCGCAGTGGGACGGGATGTGCGTTTGGAGGA
CGTGGAGGGTATGATCGGCAAGCTGCGGAAGTGGTTAGGAAACGCTGAGA
TGCTGCTGGAGAATTTTGAAGAGCGCATGCGCGACATCCACGCTGGCCGC
GCCGAACTGCAGCAGCAACGGCACAAGTACGTCCAGCAGTTCGAGCAAGT
CAAGACCCAATTAAACACAGGAGTGCAGCCGTATCGAGGAGGAGGGGGAG
GAGGAGGAGGGGTGGGTGGTTTTGACGGGATGGACGGGTACGATGACATT
GAGGCGTTCTTCCCCGGGGAGGGAGTTGGAGGAGGAGGAGGGGGAGTGGG
AGGACGTCGGAAGTCGGCGGCGGAGGGACGGTTCAAGCGGAAGAGCAATC
GAGAGCCGACGAGCCGGCCGCGGAATAAGTAA
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protein sequence of NO02G02020.1

>NO02G02020.1-protein ID=NO02G02020.1-protein|Name=NO02G02020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MNSDAGAGALEQFTILAKGTKGNGCAALIQQVLSTRKIVVFGELLAMQSM
QALRGTEHEPSLKLLEIFAYGTYADYQNQRTTANLPELTTPQLRKLRLLT
MLTLAHKHESIPYATLFQALGLDGNVREVEDLIIEAIYMGFLSGRLDQRR
GLFRVKGAVGRDVRLEDVEGMIGKLRKWLGNAEMLLENFEERMRDIHAGR
AELQQQRHKYVQQFEQVKTQLNTGVQPYRGGGGGGGGVGGFDGMDGYDDI
EAFFPGEGVGGGGGGVGGRRKSAAEGRFKRKSNREPTSRPRNK*
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mRNA from alignment at chr2:575940..577732-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02020.1 ID=NO02G02020.1|Name=NO02G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1793bp|location=Sequence derived from alignment at chr2:575940..577732- (Nannochloropsis oceanica)
ATGAACTCGGACGCGGGCGCGGGGGCCTTGGAGCAGTTTACCATCCTGGC
CAAGGGAACAAAAGGAAATGGCTGTGCGGCGCTCATCCAGCAGGTAAGGG
ACTAGCTTCGAGAGGGAGGAGGGGAAGGAGGGTGGGAAGGGAGGGAGGAG
CCGCCCGCAGTCGCAGAGCAAGGAAAGGAGACGACGAACCACACAACTCA
TCGCAACCCACGCCCTGTCCTTCCTCCCCTAAAAAGGTCCTATCCACGCG
CAAGATAGTCGTCTTTGGGGAGCTGTTGGCCATGCAGAGCATGCAAGCGG
TACGTGTAAATGGTGCTTTGCCCCTCCTCAATATACCTATTCCTCATGGT
TATAAATATATATATATATACAGTTACGGGGTACGGAGCATGAGCCCTCC
CTTAAGCTTCTGGAGATTTTTGCCTACGGGACCTATGCCGACTATCAGAG
TATGTGGGCCTTGATCGTTCTTGGTCCTTCCTCCCCTCCCCTCCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCCCCTTGTGCCAAAG
GCATGAACACGCGCACCCATACTCCTTGTTATTTAAATTTGTAACCCATA
GACCAACGCACGACCGCTAATCTTCCCGAGCTGACGACGCCGCAGCTCCG
CAAGCTCCGGCTGTTGACCATGCTGACCTTGGCACACAAGCACGAGGTAA
AGGAGAAGGAGGGAGGGAAAGAGGGACGGAAGAAGAAGAAACACCTGCGT
CTTGCATTTCCCGACAGAGAAAAAAATATCGTCATAAGTGAAAACCATGA
AAAGAAAAATCGACATCCATCATCACCCTCTCAAACACTCACAACAACCA
CCAACAGAGCATCCCTTACGCCACCCTCTTCCAAGCACTCGGCCTTGACG
GCAATGTCCGCGAGGTCGAAGACCTGATCATTGAGGCCATATACATGGGC
TTTCTATCCGGGAGGTTGGATCAACGCCGCGGCCTGTTTCGAGTGAAGGG
CGCAGTGGGACGGGATGTGCGTTTGGAGGACGTGGAGGGTATGATCGGCA
AGCTGCGGAAGTGGTGAGTTCGGGATGGAGGGGAGGGGTGAGAAGGGATG
GTTGGGTCAGGAAGAAGGAGAAGCAGAATATCTGCCGTGCCTCTTTGTCC
TTATGTGATTCTTACGTGCCTCCTTTCTGATGTGATTCTTGCATGCCTCC
TTCCTTGTGATTCTTACATGCCTTCTTTCTTCCACCAGGTTAGGAAACGC
TGAGATGCTGCTGGAGAATTTTGAAGAGCGCATGCGGTATGTTAATTTCT
CGTTTTTCTTCTCGAGGCTCGGTCGGTGGATCGGTATTGGTTGTTTTTGT
CTTTCTTTCTCACGTCTGCATCAAATGGGACAGTGCGGCTACAGTCCTAA
ATATTCTGAATGACATGCTTTGGGAAGCCTTACCTCTCACTTCTCACATT
TCCTCCCCCGTTTCCCTCCCTCCTTTCATCCCTTTTCATCAGCGACATCC
ACGCTGGCCGCGCCGAACTGCAGCAGCAACGGCACAAGTACGTCCAGCAG
TTCGAGCAAGTCAAGACCCAATTAAACACAGGAGTGCAGCCGTATCGAGG
AGGAGGGGGAGGAGGAGGAGGGGTGGGTGGTTTTGACGGGATGGACGGGT
ACGATGACATTGAGGCGTTCTTCCCCGGGGAGGGAGTTGGAGGAGGAGGA
GGGGGAGTGGGAGGACGTCGGAAGTCGGCGGCGGAGGGACGGTTCAAGCG
GAAGAGCAATCGAGAGCCGACGAGCCGGCCGCGGAATAAGTAA
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Coding sequence (CDS) from alignment at chr2:575940..577732-

>NO02G02020.1 ID=NO02G02020.1|Name=NO02G02020.1|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at chr2:575940..577732- (Nannochloropsis oceanica)
ATGAACTCGGACGCGGGCGCGGGGGCCTTGGAGCAGTTTACCATCCTGGC
CAAGGGAACAAAAGGAAATGGCTGTGCGGCGCTCATCCAGCAGGTCCTAT
CCACGCGCAAGATAGTCGTCTTTGGGGAGCTGTTGGCCATGCAGAGCATG
CAAGCGTTACGGGGTACGGAGCATGAGCCCTCCCTTAAGCTTCTGGAGAT
TTTTGCCTACGGGACCTATGCCGACTATCAGAACCAACGCACGACCGCTA
ATCTTCCCGAGCTGACGACGCCGCAGCTCCGCAAGCTCCGGCTGTTGACC
ATGCTGACCTTGGCACACAAGCACGAGAGCATCCCTTACGCCACCCTCTT
CCAAGCACTCGGCCTTGACGGCAATGTCCGCGAGGTCGAAGACCTGATCA
TTGAGGCCATATACATGGGCTTTCTATCCGGGAGGTTGGATCAACGCCGC
GGCCTGTTTCGAGTGAAGGGCGCAGTGGGACGGGATGTGCGTTTGGAGGA
CGTGGAGGGTATGATCGGCAAGCTGCGGAAGTGGTTAGGAAACGCTGAGA
TGCTGCTGGAGAATTTTGAAGAGCGCATGCGCGACATCCACGCTGGCCGC
GCCGAACTGCAGCAGCAACGGCACAAGTACGTCCAGCAGTTCGAGCAAGT
CAAGACCCAATTAAACACAGGAGTGCAGCCGTATCGAGGAGGAGGGGGAG
GAGGAGGAGGGGTGGGTGGTTTTGACGGGATGGACGGGTACGATGACATT
GAGGCGTTCTTCCCCGGGGAGGGAGTTGGAGGAGGAGGAGGGGGAGTGGG
AGGACGTCGGAAGTCGGCGGCGGAGGGACGGTTCAAGCGGAAGAGCAATC
GAGAGCCGACGAGCCGGCCGCGGAATAAGTAA
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Synonyms
Publications