NO02G01980.1, NO02G01980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01980.1
Unique NameNO02G01980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1380
Alignment locationchr2:565300..566738 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:565300..566738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO02G01980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01980NO02G01980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01980.1NO02G01980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01980.1.cds1NO02G01980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01980.1.cds2NO02G01980.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01980.1 ID=NO02G01980.1|Name=NO02G01980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1380bp
ATGGGGCACGTTCCCTTGGCGGCATCGCACCCGCCGGCATCTCGAGCACC
TCGAACAGCAGCAGAATCGTCAACAACAGCAGGACCTACACGTGTGCAAC
GTCCTCGTCCTGGTGGTGCTTCGCGGCAGATGCCACTCGAAGAAGAGAAG
GAAGAGGAGGAGGAGCAGGAGAAGGAAGACATACGAGGAGTCACTGGGAC
AACGTGGCAAGACATGGAGGAGAAGGTAGCGCGAATTGAGAAGCAGCGGG
AGGTGGATGAGGAGGAAGAAGCGGAGGAGGAAGGGGAGGGAGGGGCAGCT
GAGTCATCTTCCGTCGCCTTGCTAGGACGCGGGCGACGTTTCGGGCGAGG
AGAGAAGCAAGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAG
AGACGGGCGTATTTTCATCATTATCGTCCACAGCGGAGCTTGAGCGAGAG
ATTGAAAGCATGAGAAAGAGCTTGGAGGAAGTTGCGCGATCGTTGCGTGG
TCGGTCGATGTTTGATCCCAAGTTAGATGCATTGATAGAACAACGTCGCC
AGCTTCAGAAAGCGATGAAATTCTCTCGAGGGCTACAGGAGACTGCCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGTAGTAGTAGTAGTAGTAGTAGTAG
TAGCACCAGCGGGGTCCGGGGAAGTGAAAAGAGCGCTGTGCTTTCGGGGG
TTGGAGGTGGTGATGATGATGCTGCTCCGGCAGGGAGAGAAATGGGTGGC
GTGATTACTGCTGCTCGTGTCGCGCGCCGTGCGGAGGATACAGGGGCGAT
GCGGACGCAGCCAGTCTTTATTCGGGGAGGGTTGAAAGGGTTGTCATACT
ACCAGGAGGTAGAAGAGGAGGAAGGGGTGGGCGCTGGGACACGACTCTTG
CATGGTGGGAGACTGCAGCAACACTCTGTCGGTGGGTATGGGAGAAGAGA
GAAAGTGGAAGAGAAGGAGGAGGAGGAAGTAGAGGAAGAAGGGATGGATG
AACAGTCCATTTCTTACACTGAGATGGATCTAAGCTTGAGCGCGCGGCAA
CTTCGAGCAGGGAATTACGTGGAGGGAGAAAAGGAGGAGGATGAAGAAGA
GGAAGAGGGAGGAGGACGTGTGGAGCTTTCGGTCGATCGTATTGTGCAAG
GCTATCAACAACGACGACAAGAGTTGGTGCGTCGTTTGGAAGCACGACGA
CGGCAAGTCCAAGGGGCCTCTTCTTTCCTTCCTTCGGCTCCACCTGCTCG
CCCTTCGTCGCCTCGTCCTGTCGGCATTATGGCGCCCTCGGCGCGGTCTC
AGATGGAGCGCACGCGTCTGCTTCAACTGTTACGGCAACGGGAGGCACGT
GTTAGAGGTGCAGGGGTATCGCGGCTGTAG
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protein sequence of NO02G01980.1

>NO02G01980.1-protein ID=NO02G01980.1-protein|Name=NO02G01980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=460bp
MGHVPLAASHPPASRAPRTAAESSTTAGPTRVQRPRPGGASRQMPLEEEK
EEEEEQEKEDIRGVTGTTWQDMEEKVARIEKQREVDEEEEAEEEGEGGAA
ESSSVALLGRGRRFGRGEKQEEEEEEEEEEEEGETGVFSSLSSTAELERE
IESMRKSLEEVARSLRGRSMFDPKLDALIEQRRQLQKAMKFSRGLQETAS
SSSSSSSSSSSSSSSSSSTSGVRGSEKSAVLSGVGGGDDDAAPAGREMGG
VITAARVARRAEDTGAMRTQPVFIRGGLKGLSYYQEVEEEEGVGAGTRLL
HGGRLQQHSVGGYGRREKVEEKEEEEVEEEGMDEQSISYTEMDLSLSARQ
LRAGNYVEGEKEEDEEEEEGGGRVELSVDRIVQGYQQRRQELVRRLEARR
RQVQGASSFLPSAPPARPSSPRPVGIMAPSARSQMERTRLLQLLRQREAR
VRGAGVSRL*
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mRNA from alignment at chr2:565300..566738+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01980.1 ID=NO02G01980.1|Name=NO02G01980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1439bp|location=Sequence derived from alignment at chr2:565300..566738+ (Nannochloropsis oceanica)
ATGGGGCACGTTCCCTTGGCGGCATCGCACCCGCCGGCATCTCGAGCACC
TCGAACAGCAGCAGAATCGTCAACAACAGCAGGACCTACACGTGTGCAAC
GTCCTCGTCCTGGTGGTGCTTCGCGGCAGATGCCACTCGAAGAAGAGAAG
GAAGAGGAGGAGGAGCAGGAGAAGGAAGACATACGAGGAGTCACTGGGAC
AACGTGGCAAGACATGGAGGAGAAGGTAGCGCGAATTGAGAAGCAGCGGG
AGGTGGATGAGGAGGAAGAAGCGGAGGAGGAAGGGGAGGGAGGGGCAGCT
GAGTCATCTTCCGTCGCCTTGCTAGGACGCGGGCGACGTTTCGGGCGAGG
AGAGAAGCAAGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAG
AGACGGGCGTATTTTCATCATTATCGTCCACAGCGGAGCTTGAGCGAGAG
ATTGAAAGCATGAGAAAGAGCTTGGAGGAAGTTGCGCGATCGTTGCGTGG
TCGGTCGATGTTTGATCCCAAGTTAGATGCATTGATAGAACAACGTCGCC
AGCTTCAGAAAGCGATGAAATTCTCTCGAGGGCTACAGGAGACTGCCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGTAGTAGTAGTAGTAGTAGTAGTAG
TAGCACCAGCGGGGTCCGGGGAAGTGAAAAGAGCGCTGTGCTTTCGGGGG
TTGGAGGTGGTGATGATGATGCTGCTCCGGCAGGGAGAGAAATGGGTGGC
GTGATTACTGCTGCTCGTGTCGCGCGCCGTGCGGAGGATACAGGGGCGAT
GCGGACGCAGCCAGTCTTTATTCGGGGAGGGTTGAAAGGGTTGTCATACT
ACCAGGAGGTAGAAGAGGAGGAAGGGGTGGGCGCTGGGACACGACTCTTG
CATGGTGGGAGACTGCAGCAACACTCTGTCGGTGGGTATGGGAGAAGAGA
GAAAGTGGAAGAGAAGGAGGAGGAGGAAGTAGAGGAAGAAGGGATGGATG
AACAGTCCATTTCTTACACTGAGATGGATCTAAGCTTGAGCGCGCGGCAA
CTTCGAGCAGGGAATGTAGGTAGGGAGGGAGGGGGGAGAGATCTGCTTAT
TCCTCATTATTCCTGGAAAAGCAGTACGTGGAGGGAGAAAAGGAGGAGGA
TGAAGAAGAGGAAGAGGGAGGAGGACGTGTGGAGCTTTCGGTCGATCGTA
TTGTGCAAGGCTATCAACAACGACGACAAGAGTTGGTGCGTCGTTTGGAA
GCACGACGACGGCAAGTCCAAGGGGCCTCTTCTTTCCTTCCTTCGGCTCC
ACCTGCTCGCCCTTCGTCGCCTCGTCCTGTCGGCATTATGGCGCCCTCGG
CGCGGTCTCAGATGGAGCGCACGCGTCTGCTTCAACTGTTACGGCAACGG
GAGGCACGTGTTAGAGGTGCAGGGGTATCGCGGCTGTAG
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Coding sequence (CDS) from alignment at chr2:565300..566738+

>NO02G01980.1 ID=NO02G01980.1|Name=NO02G01980.1|organism=Nannochloropsis oceanica|type=CDS|length=1380bp|location=Sequence derived from alignment at chr2:565300..566738+ (Nannochloropsis oceanica)
ATGGGGCACGTTCCCTTGGCGGCATCGCACCCGCCGGCATCTCGAGCACC
TCGAACAGCAGCAGAATCGTCAACAACAGCAGGACCTACACGTGTGCAAC
GTCCTCGTCCTGGTGGTGCTTCGCGGCAGATGCCACTCGAAGAAGAGAAG
GAAGAGGAGGAGGAGCAGGAGAAGGAAGACATACGAGGAGTCACTGGGAC
AACGTGGCAAGACATGGAGGAGAAGGTAGCGCGAATTGAGAAGCAGCGGG
AGGTGGATGAGGAGGAAGAAGCGGAGGAGGAAGGGGAGGGAGGGGCAGCT
GAGTCATCTTCCGTCGCCTTGCTAGGACGCGGGCGACGTTTCGGGCGAGG
AGAGAAGCAAGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAG
AGACGGGCGTATTTTCATCATTATCGTCCACAGCGGAGCTTGAGCGAGAG
ATTGAAAGCATGAGAAAGAGCTTGGAGGAAGTTGCGCGATCGTTGCGTGG
TCGGTCGATGTTTGATCCCAAGTTAGATGCATTGATAGAACAACGTCGCC
AGCTTCAGAAAGCGATGAAATTCTCTCGAGGGCTACAGGAGACTGCCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGTAGTAGTAGTAGTAGTAGTAGTAG
TAGCACCAGCGGGGTCCGGGGAAGTGAAAAGAGCGCTGTGCTTTCGGGGG
TTGGAGGTGGTGATGATGATGCTGCTCCGGCAGGGAGAGAAATGGGTGGC
GTGATTACTGCTGCTCGTGTCGCGCGCCGTGCGGAGGATACAGGGGCGAT
GCGGACGCAGCCAGTCTTTATTCGGGGAGGGTTGAAAGGGTTGTCATACT
ACCAGGAGGTAGAAGAGGAGGAAGGGGTGGGCGCTGGGACACGACTCTTG
CATGGTGGGAGACTGCAGCAACACTCTGTCGGTGGGTATGGGAGAAGAGA
GAAAGTGGAAGAGAAGGAGGAGGAGGAAGTAGAGGAAGAAGGGATGGATG
AACAGTCCATTTCTTACACTGAGATGGATCTAAGCTTGAGCGCGCGGCAA
CTTCGAGCAGGGAATTACGTGGAGGGAGAAAAGGAGGAGGATGAAGAAGA
GGAAGAGGGAGGAGGACGTGTGGAGCTTTCGGTCGATCGTATTGTGCAAG
GCTATCAACAACGACGACAAGAGTTGGTGCGTCGTTTGGAAGCACGACGA
CGGCAAGTCCAAGGGGCCTCTTCTTTCCTTCCTTCGGCTCCACCTGCTCG
CCCTTCGTCGCCTCGTCCTGTCGGCATTATGGCGCCCTCGGCGCGGTCTC
AGATGGAGCGCACGCGTCTGCTTCAACTGTTACGGCAACGGGAGGCACGT
GTTAGAGGTGCAGGGGTATCGCGGCTGTAG
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Synonyms
Publications