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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr2 | genome | chr2:531980..534612 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G01830.1 vs.
Match: EWM30515.1 (dhhc zinc finger domain containing protein [Nannochloropsis gaditana]) HSP 1 Score: 522.7 bits (1345), Expect = 9.800e-145 Identity = 255/363 (70.25%), Postives = 305/363 (84.02%), Query Frame = 0
Query: 1 MEIMTILIVYIVLVTFLVWVCVVADPNSDSLGGKLNILLTEDLPGLLTKKLRRCLPSSLFDSLARSYDYVVNQRNPLLQLLYLFLYLGSFATFIYEGLGRMEPIDLAFSTALVVACLSSFVVACSIPAGTITPSSWPTFDNYKADEIIYASGKECVTCKVPKLARSKHCRLCGVCQSRFDHHCGWLNQCVGELNYRHFLFFLALHSMTFFWGSSCLWEVLRKEMAEKQLWEAKFYSPSSGATVGATPVVVLQYLVVHEGAVCGVLALCFVMAVVLAGFLLYHLRLALRNITTNESFKWSAVRAHAKLARDHARRAHEASGGALPLRQIADPQNSYHISFVDNLKEVFFPRCERPCTGS-GRKA 363
M ++TIL+VY+ L+ FL+WVCV+ADPNSD+LGG+LN+LLTE++P +T LRR LPS +FD+LA++YDY+V QRNP+LQ LYL L+LGSFAT++YEG GR+ DLA S ALV+ACL+SFVVACS+PAGTI+PS+W +DNYK D +IY +G+ C TC V KLARSKHCRLCGVCQSRFDHHCGWLNQCVGE+NYRHFLFFLALHS TF +GSS LW +LR+EM + +LW+A FYSPSSG TVG++P+VV QYLVVHEGAVCGVLAL FVMA+VLAGFLLYHL LA +N TTNE+FKW+ VR K+ R ARRAHEASGGALPLR+IADP NSY+IS +NL EV FPR ER S GRKA
Sbjct: 1 MSVVTILVVYMTLIAFLIWVCVLADPNSDTLGGRLNVLLTEEIPTRITFNLRRRLPSKVFDALAKAYDYIVRQRNPILQCLYLLLFLGSFATYLYEGWGRIPLGDLALSVALVLACLASFVVACSVPAGTISPSTWERYDNYKPDNVIYVAGRVCPTCDVVKLARSKHCRLCGVCQSRFDHHCGWLNQCVGEVNYRHFLFFLALHSCTFLYGSSRLWGILRREMIKNKLWDATFYSPSSGQTVGSSPLVVCQYLVVHEGAVCGVLALAFVMAIVLAGFLLYHLWLAGQNTTTNETFKWAEVRLKVKIERSQARRAHEASGGALPLRRIADPVNSYNISLYENLMEVLFPRSERRAQNSTGRKA 363
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G01830.1 ID=NO02G01830.1|Name=NO02G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2161bp
AGCACCTTATAGCGGCGCTTGAGGTAGCTGGACCTCGAAAGAGGGAGGGC
GGGGCGCCCTGAAAAGCGGCGGAGAGCATCATTTTCACCTCGCACCATCG
CCTGGAGCCGGGAGGCTGAATCGTCCCAGGCCTGAGCCATGGAGATCATG
ACCATTTTAATTGTCTACATCGTCCTCGTTACATTCTTGGTCTGGGTTTG
CGTGGTAGCGGACCCCAACAGTGACTCATTAGGCGGCAAGCTCAACATCC
TCCTTACCGAAGATCTTCCCGGATTACTCACCAAAAAGCTCCGCCGTTGC
CTGCCCTCCTCGCTCTTCGACTCACTCGCCCGCTCCTACGACTATGTGGT
GAATCAACGCAATCCCCTCCTCCAGCTCCTCTACCTCTTTCTTTACCTCG
GCTCCTTCGCCACCTTCATCTATGAAGGCTTGGGACGCATGGAGCCTATA
GACTTGGCCTTTTCTACCGCGTTGGTCGTTGCCTGTTTGTCTTCGTTTGT
CGTAGCGTGCTCGATCCCGGCGGGTACCATCACCCCGTCGAGCTGGCCAA
CCTTTGACAATTACAAGGCGGACGAGATTATCTATGCTTCCGGAAAAGAG
TGTGTGACATGTAAGGTACCCAAATTGGCGAGGAGCAAGCATTGTCGTCT
GTGTGGGGTGTGTCAGTCGAGGTTTGATCACCACTGTGGGTGGTTAAACC
AGTGCGTGGGTGAGCTGAACTATAGACATTTTCTCTTCTTTTTGGCGTTG
CACAGCATGACTTTCTTTTGGGGAAGTTCGTGTTTATGGGAGGTGTTGAG
GAAAGAAATGGCAGAGAAACAATTGTGGGAGGCAAAATTCTATAGTCCGA
GCTCTGGGGCGACGGTGGGGGCGACCCCAGTGGTGGTGTTGCAATATCTT
GTGGTGCATGAAGGAGCAGTGTGTGGAGTGCTTGCATTGTGCTTTGTCAT
GGCTGTGGTACTGGCGGGGTTTTTGTTGTATCACTTGCGTTTGGCCTTGA
GAAATATCACGACGAACGAGTCGTTTAAGTGGTCTGCGGTGAGGGCACAT
GCGAAGTTGGCGAGGGACCATGCGAGGAGGGCGCATGAGGCGTCGGGAGG
AGCCCTGCCTTTACGTCAGATCGCCGACCCCCAAAATTCCTATCACATCT
CCTTTGTCGACAACTTGAAAGAAGTCTTCTTTCCACGCTGTGAAAGACCA
TGCACAGGTTCAGGGAGAAAAGCGGGAGGAACAGCAGCAGCAGGGGGGGG
ACCCAAGCCAGAGTTGAACGATTTAACCTCCTCTCCTTCACGGCTAAAAA
AGGACTAGGATTGCAGGATACTGGACTGAATGAAGAAAAACTCAGAAAGC
ATAAATAAAATGAGAAAAAAATAAAAATACCTTTTGAACTGAAATGGTTG
ATCTTGTCGAAATTAATTGCGTATTGCGTATCGCATTTGAGGACTCTAGT
AGGGTTGGGGTGGGTGGGAGAGTGGGGCATTGAAGCGCAAGCAGATTTTT
TTCCTTTTGACGACGCTCGCAAGTCGAGTTTGGACTGCACTGCAGCACCC
CCGCGAACTGATGCGAACAAGCAGGTTACGAATTGGTTATCTTCCTGCTC
TGAGATTGTCCTCTCGAGCTTGACTGTGGGTCCATAGAGGGTCAGGGGGA
TCCATGATTGTTTCCCTTGCTCCAGCGCGAGGTTTAGTACATCTCTCTTA
ACAAAAGAACTTTGCGTTCCAAAATATTCACGGTTTTCACCTTTGTGTTT
TTCCCACGCACCACTCCGCCACTTGCCCTGTCGCACGAAAGATGAAAAAA
ATCAGGTCTACATATTTCACTACGTGACTTGGTGTGTCTTTTTTCTTTGT
GTTGTGCATTTGGCGTTCCCGAGTAATTTCTTCCCAGGTGGTCGTCGCCT
CGCGGGTCCTCACAAACAGGTCCCTCCCTCCCTCCTCATCGCCAAGTTTT
CAGATCCCACATGGACGTTTGCACCACATGGAAGCCCTCTGCACCCCATG
CATGCACACAATCAGACACATATAATGCCATTGTAAGCAAAGAGACGTGA
AGAGAGGGCATAGGCAGTCAGCCGTACCAACGCCAGGTACAGCCACAGAG
CAGTCCTCCCACGACGCCGTTGATGATGATGATGATGGGCCCCTTCGTCA
GCAAAATGAAG back to topprotein sequence of NO02G01830.1 >NO02G01830.1-protein ID=NO02G01830.1-protein|Name=NO02G01830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=390bp
MEIMTILIVYIVLVTFLVWVCVVADPNSDSLGGKLNILLTEDLPGLLTKK
LRRCLPSSLFDSLARSYDYVVNQRNPLLQLLYLFLYLGSFATFIYEGLGR
MEPIDLAFSTALVVACLSSFVVACSIPAGTITPSSWPTFDNYKADEIIYA
SGKECVTCKVPKLARSKHCRLCGVCQSRFDHHCGWLNQCVGELNYRHFLF
FLALHSMTFFWGSSCLWEVLRKEMAEKQLWEAKFYSPSSGATVGATPVVV
LQYLVVHEGAVCGVLALCFVMAVVLAGFLLYHLRLALRNITTNESFKWSA
VRAHAKLARDHARRAHEASGGALPLRQIADPQNSYHISFVDNLKEVFFPR
CERPCTGSGRKAGGTAAAGGGPKPELNDLTSSPSRLKKD* back to topmRNA from alignment at chr2:531980..534612- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G01830.1 ID=NO02G01830.1|Name=NO02G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2633bp|location=Sequence derived from alignment at chr2:531980..534612- (Nannochloropsis oceanica)
AGCACCTTATAGCGGCGCTTGAGGTAGCTGGACCTCGAAAGAGGGAGGGC
GGGGCGCCCTGAAAAGCGGCGGAGAGCATCATTTTCACCTCGCACCATCG
CCTGGAGCCGGGAGGCTGAATCGTCCCAGGCCTGAGCCATGGAGATCATG
ACCATTTTAATTGTCTACATCGTCCTCGTTACATTCTTGGTCTGGGTTTG
CGTGGTAGCGGACCCCAACAGTGACTCATTAGGTACGTTTGTGTCTCTCT
AAGAGGGCACGCCGCCTCTGGGCTTGAATGAAGTGATGTCCCCCTTCCGG
GCTTGAATGAAGTGATGTAGGACACAGGGTACTAGAGTGAGAATCGTCAA
CTCTCTTGCTTCCTCTTCTCTTACTGCTAAGCAGCTTTATCTACTTATGT
ACTGCATAGTTATGCCTGTACGTCTAGCTCCAATTTTGATGTCGCCACTC
ATCCATTCACATTTAAGAGACCCACCCTCCTCCTCCCTCTTTCCCCACCT
ACGTCAATAACTCCATTCCAACACTAGGCGGCAAGCTCAACATCCTCCTT
ACCGAAGATCTTCCCGGATTACTCACCAAAAAGCTCCGCCGTTGCCTGCC
CTCCTCGCTCTTCGACTCACTCGCCCGCTCCTACGACTATGTGGTGAATC
AACGCAATCCCCTCCTCCAGCTCCTCTACCTCTTTCTTTACCTCGGCTCC
TTCGCCACCTTCATCTATGAAGGCTTGGGACGCATGGAGCCTATAGACTT
GGCCTTTTCTACCGCGTTGGTCGTTGCCTGTTTGTCTTCGTTTGTCGTAG
CGTGCTCGATCCCGGCGGGTACCATCACCCCGTCGAGCTGGCCAACCTTT
GACAATTACAAGGCGGACGAGATTATCTATGCTTCCGGAAAAGAGTGTGT
GACATGTAAGGTACCCAAATTGGCGAGGAGCAAGCATTGTCGTCTGTGTG
GGGTGTGTCAGTCGAGGTTTGATCACCACTGTGGGTGGTTAAACCAGTGC
GTGGGTGAGCTGAACTATAGACATTTTCTCTTCTTTTTGGCGTTGCACAG
CATGACTTTCTTTTGGGGAAGTTCGTGTTTATGGGAGGTGTTGAGGAAAG
AAATGGCAGAGAAACAATTGTGGGAGGCAAAATTCTATAGTCCGAGCTCT
GGGGCGACGGTGGGGGCGACCCCAGTGGTGGTGTTGCAATATCTTGTGGT
GCATGAAGGAGCAGTGTGTGGAGTGCTTGCATTGTGCTTTGTCATGGCTG
TGGTACTGGCGGGGTTTTTGTTGTATCACTTGCGTTTGGCCTTGAGAAAT
ATCACGACGAACGAGTCGTTTAAGTGGTCTGCGGTGAGGGCACATGCGAA
GTTGGCGAGGGACCATGCGAGGAGGGCGCATGAGGCGTCGGGTAAGGATT
CAAGAAGGGAAAGAGTGGACAAGGGGAGGGATGGACTGCACGAGAAAATT
GGCTCGATCTTATCGAACGGATTTTCTAGATGCAAGATTTGCAAGGTCTC
GAACCGCTTCATGGATGTCGTGTATGATGCTCACTTCTCTTTTGTCCCTC
CCTTCCCTTGAACGTCAGGAGGAGCCCTGCCTTTACGTCAGATCGCCGAC
CCCCAAAATTCCTATCACATCTCCTTTGTCGACAACTTGAAAGAAGTCTT
CTTTCCACGCTGTGAAAGACCATGCACAGGTTCAGGGAGAAAAGCGGGAG
GAACAGCAGCAGCAGGGGGGGGACCCAAGCCAGAGTTGAACGATTTAACC
TCCTCTCCTTCACGGCTAAAAAAGGACTAGGATTGCAGGATACTGGACTG
AATGAAGAAAAACTCAGAAAGCATAAATAAAATGAGAAAAAAATAAAAAT
ACCTTTTGAACTGAAATGGTTGATCTTGTCGAAATTAATTGCGTATTGCG
TATCGCATTTGAGGACTCTAGTAGGGTTGGGGTGGGTGGGAGAGTGGGGC
ATTGAAGCGCAAGCAGATTTTTTTCCTTTTGACGACGCTCGCAAGTCGAG
TTTGGACTGCACTGCAGCACCCCCGCGAACTGATGCGAACAAGCAGGTTA
CGAATTGGTTATCTTCCTGCTCTGAGATTGTCCTCTCGAGCTTGACTGTG
GGTCCATAGAGGGTCAGGGGGATCCATGATTGTTTCCCTTGCTCCAGCGC
GAGGTTTAGTACATCTCTCTTAACAAAAGAACTTTGCGTTCCAAAATATT
CACGGTTTTCACCTTTGTGTTTTTCCCACGCACCACTCCGCCACTTGCCC
TGTCGCACGAAAGATGAAAAAAATCAGGTCTACATATTTCACTACGTGAC
TTGGTGTGTCTTTTTTCTTTGTGTTGTGCATTTGGCGTTCCCGAGTAATT
TCTTCCCAGGTGGTCGTCGCCTCGCGGGTCCTCACAAACAGGTCCCTCCC
TCCCTCCTCATCGCCAAGTTTTCAGATCCCACATGGACGTTTGCACCACA
TGGAAGCCCTCTGCACCCCATGCATGCACACAATCAGACACATATAATGC
CATTGTAAGCAAAGAGACGTGAAGAGAGGGCATAGGCAGTCAGCCGTACC
AACGCCAGGTACAGCCACAGAGCAGTCCTCCCACGACGCCGTTGATGATG
ATGATGATGGGCCCCTTCGTCAGCAAAATGAAG back to topCoding sequence (CDS) from alignment at chr2:531980..534612- >NO02G01830.1 ID=NO02G01830.1|Name=NO02G01830.1|organism=Nannochloropsis oceanica|type=CDS|length=1170bp|location=Sequence derived from alignment at chr2:531980..534612- (Nannochloropsis oceanica)
ATGGAGATCATGACCATTTTAATTGTCTACATCGTCCTCGTTACATTCTT
GGTCTGGGTTTGCGTGGTAGCGGACCCCAACAGTGACTCATTAGGCGGCA
AGCTCAACATCCTCCTTACCGAAGATCTTCCCGGATTACTCACCAAAAAG
CTCCGCCGTTGCCTGCCCTCCTCGCTCTTCGACTCACTCGCCCGCTCCTA
CGACTATGTGGTGAATCAACGCAATCCCCTCCTCCAGCTCCTCTACCTCT
TTCTTTACCTCGGCTCCTTCGCCACCTTCATCTATGAAGGCTTGGGACGC
ATGGAGCCTATAGACTTGGCCTTTTCTACCGCGTTGGTCGTTGCCTGTTT
GTCTTCGTTTGTCGTAGCGTGCTCGATCCCGGCGGGTACCATCACCCCGT
CGAGCTGGCCAACCTTTGACAATTACAAGGCGGACGAGATTATCTATGCT
TCCGGAAAAGAGTGTGTGACATGTAAGGTACCCAAATTGGCGAGGAGCAA
GCATTGTCGTCTGTGTGGGGTGTGTCAGTCGAGGTTTGATCACCACTGTG
GGTGGTTAAACCAGTGCGTGGGTGAGCTGAACTATAGACATTTTCTCTTC
TTTTTGGCGTTGCACAGCATGACTTTCTTTTGGGGAAGTTCGTGTTTATG
GGAGGTGTTGAGGAAAGAAATGGCAGAGAAACAATTGTGGGAGGCAAAAT
TCTATAGTCCGAGCTCTGGGGCGACGGTGGGGGCGACCCCAGTGGTGGTG
TTGCAATATCTTGTGGTGCATGAAGGAGCAGTGTGTGGAGTGCTTGCATT
GTGCTTTGTCATGGCTGTGGTACTGGCGGGGTTTTTGTTGTATCACTTGC
GTTTGGCCTTGAGAAATATCACGACGAACGAGTCGTTTAAGTGGTCTGCG
GTGAGGGCACATGCGAAGTTGGCGAGGGACCATGCGAGGAGGGCGCATGA
GGCGTCGGGAGGAGCCCTGCCTTTACGTCAGATCGCCGACCCCCAAAATT
CCTATCACATCTCCTTTGTCGACAACTTGAAAGAAGTCTTCTTTCCACGC
TGTGAAAGACCATGCACAGGTTCAGGGAGAAAAGCGGGAGGAACAGCAGC
AGCAGGGGGGGGACCCAAGCCAGAGTTGAACGATTTAACCTCCTCTCCTT
CACGGCTAAAAAAGGACTAG back to top
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