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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:409023..410630 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G01350.1 vs.
Match: EWM30510.1 (adp-ribosylation factor gtpase-activating protein agd7 [Nannochloropsis gaditana]) HSP 1 Score: 475.3 bits (1222), Expect = 1.900e-130 Identity = 265/393 (67.43%), Postives = 303/393 (77.10%), Query Frame = 0
Query: 21 TMAHSMDAATERRLRELPGNRVCADCPAPNPQWASVSYGCFICLDCSGQHRALGVHLSFVRSITMDSWTDKQVKLMENGGNEKLVSFLHQRGVEKSLPIHKKYNTPEAELYRERMKALVEGRELPTELPKRVPA-------PVPSDGEGGGQVGSALEPLQGETEAQYVARQRQLNEEARQRMKAKFGPAGLSGGGGGGRMQGFGSDPNYDPSKGGFGGGKGQDIGGEIMGAVGKLGLTVQAHLQEGQLGQKLQMGWSNVSSRVQDPELAAKVKEKASTGWSALATGAVALWSKTADLTVDLVKDITKEEEEPMRLYNRSGGEGAGRGGLVMEGLGSRSGSSSSSSSSSGGGGSGMGGQQQ-------HQQSSMLGMGTSSPFVG---RGGGG 397
TMAHSMD+ TERRLREL GN+VCADCPAPNPQWASVSYG FICLDCSGQHRALGVHLSFVRSITMDSWTDKQ+KLME GGN++++SF QRG+ KS+PI +KY T EAELYRER+KA+VEGRE PTELP A P+ GGGQ SALEPL GET+ QYVARQRQLN+EAR RM+AKFGP G GGGGGRMQGFGSDP+YDPS+G FGGGKGQ++G EI+GAVGK G TVQA LQEGQLG+KLQ WS V SRVQDPELA+KVKE+AS+GWSALATGA LWSKTADLTVDLV+DITKEE+EP+R YNR GEG R G G+ + S + + GG MG QQ +++SML G +P++G R G G
Sbjct: 24 TMAHSMDSVTERRLRELAGNKVCADCPAPNPQWASVSYGSFICLDCSGQHRALGVHLSFVRSITMDSWTDKQIKLMEKGGNDQVISFFQQRGIAKSVPIQQKYKTAEAELYRERIKAVVEGREPPTELPAGARALSASGLGQGPATSSGGGQGVSALEPLPGETQDQYVARQRQLNDEARHRMQAKFGPGGFQ-GGGGGRMQGFGSDPDYDPSRGRFGGGKGQELGNEIIGAVGKWGSTVQAQLQEGQLGKKLQASWSTVQSRVQDPELASKVKERASSGWSALATGAATLWSKTADLTVDLVRDITKEEDEPIRFYNRL-GEGEER------GTGAAVRAEGRSGAGNVGGRRNMGRFQQDLRNGSSEEETSMLDRGADAPYLGSYERDGSG 408
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G01350.1 ID=NO02G01350.1|Name=NO02G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1233bp ATGCTTTCTGCTCCACCCACGCACTATCACACAGCCTTTCAGCAACAGCT CCAGGACGATACGATGGCCCACTCGATGGATGCCGCAACGGAACGTCGCC TGCGGGAGCTGCCAGGCAACAGGGTCTGCGCCGACTGCCCTGCCCCCAAT CCCCAGTGGGCCAGCGTCTCTTATGGCTGCTTCATCTGCTTGGACTGCTC TGGGCAACATCGTGCATTGGGCGTGCATCTATCGTTTGTCCGCTCTATTA CCATGGATAGTTGGACCGACAAGCAAGTGAAGCTAATGGAGAACGGGGGG AATGAAAAACTGGTTTCGTTCTTGCATCAGAGGGGGGTGGAGAAGAGTCT GCCGATACACAAAAAGTACAATACTCCCGAAGCAGAATTGTATAGGGAGA GGATGAAGGCTTTGGTTGAGGGGAGGGAGCTACCGACGGAGCTCCCGAAG CGGGTACCTGCTCCTGTTCCTAGTGATGGAGAGGGGGGGGGGCAAGTGGG TTCGGCCTTGGAACCTTTGCAGGGGGAGACAGAAGCGCAGTATGTGGCGC GGCAGAGACAGTTGAACGAAGAGGCGAGGCAGAGGATGAAGGCCAAGTTT GGCCCGGCGGGGTTGAGTGGCGGTGGAGGAGGAGGGAGAATGCAGGGGTT TGGTAGTGATCCCAATTATGACCCTTCCAAGGGGGGGTTTGGTGGAGGCA AGGGACAGGATATTGGCGGTGAGATTATGGGAGCTGTGGGAAAGCTAGGG TTGACGGTGCAGGCGCATTTGCAGGAGGGGCAGTTGGGGCAAAAGCTGCA GATGGGTTGGAGCAACGTGTCAAGTCGGGTCCAGGATCCGGAGCTGGCAG CGAAGGTGAAGGAAAAGGCGAGCACGGGCTGGTCGGCACTGGCGACTGGG GCGGTGGCGCTTTGGAGTAAGACGGCTGATTTGACTGTGGACTTGGTGAA GGATATAACGAAGGAGGAGGAAGAACCCATGCGATTGTACAATAGGTCAG GAGGGGAGGGAGCGGGGAGAGGAGGTTTGGTTATGGAGGGATTAGGAAGT AGAAGTGGAAGTAGTAGTAGCAGCAGCAGCAGCAGTGGTGGTGGTGGATC GGGGATGGGGGGTCAGCAACAGCATCAGCAGAGCTCGATGTTGGGCATGG GGACTTCTTCACCTTTTGTCGGCCGTGGAGGCGGGGGGGGTTGGGAGGGA GTGGAAACGTCTATGGCAAGAGCAGTAGAGTGA back to topprotein sequence of NO02G01350.1 >NO02G01350.1-protein ID=NO02G01350.1-protein|Name=NO02G01350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp MLSAPPTHYHTAFQQQLQDDTMAHSMDAATERRLRELPGNRVCADCPAPN PQWASVSYGCFICLDCSGQHRALGVHLSFVRSITMDSWTDKQVKLMENGG NEKLVSFLHQRGVEKSLPIHKKYNTPEAELYRERMKALVEGRELPTELPK RVPAPVPSDGEGGGQVGSALEPLQGETEAQYVARQRQLNEEARQRMKAKF GPAGLSGGGGGGRMQGFGSDPNYDPSKGGFGGGKGQDIGGEIMGAVGKLG LTVQAHLQEGQLGQKLQMGWSNVSSRVQDPELAAKVKEKASTGWSALATG AVALWSKTADLTVDLVKDITKEEEEPMRLYNRSGGEGAGRGGLVMEGLGS RSGSSSSSSSSSGGGGSGMGGQQQHQQSSMLGMGTSSPFVGRGGGGGWEG VETSMARAVE* back to topmRNA from alignment at chr2:409023..410630+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G01350.1 ID=NO02G01350.1|Name=NO02G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1608bp|location=Sequence derived from alignment at chr2:409023..410630+ (Nannochloropsis oceanica) ATGCTTTCTGCTCCACCCACGCACTATCACACAGCCTTTCAGCAACAGCT
CCAGGACGATACGATGGCCCACTCGATGGATGCCGCAACGGAACGTCGCC
TGCGGGAGCTGCCAGGCAACAGGGTACGTTCGTTCATTAAACGATGATGA
TAAATGAATGTGTCGGGGTCCTGTACACTGCAGATCATCGTGTGTGTCCC
TCTGTGCGCCTGTGCTTGTAAGGATACATGTGTGCGCGTGCGTGCTTTAG
TGTACACCCAGATCAAAGACGCAAGAGCGCTGGAGCCCTCCTGTAGTCTG
CATCCGGCCGCCCGCTTCGTTCATGGTGACGATGACGATCTGGGGCTCCC
GTTTCGCGGCAACACCAGACAACCTCAAGCTGACGAAGCTCGAAAATGAC
CTTGCAGTGTACCATGCTTTGATGTCATCGATTGCCCTCTCTTTTTCCTT
GACTCACATTCACCCTCCCCTCCCTCCCAAAATTCCTCTTTCCGTCAGGT
CTGCGCCGACTGCCCTGCCCCCAATCCCCAGTGGGCCAGCGTCTCTTATG
GCTGCTTCATCTGCTTGGACTGCTCTGGGCAACATCGTGCATTGGGCGTG
CATCTATCGTTTGTCCGCTCTATTACCATGGATAGTTGGACCGACAAGCA
AGTGAAGCTAATGGAGAACGGGGGGAATGAAAAACTGGTTTCGTTCTTGC
ATCAGAGGGGGGTGGAGAAGAGTCTGCCGATACACAAAAAGTACAATACT
CCCGAAGCAGAATTGTATAGGGAGAGGATGAAGGCTTTGGTTGAGGGGAG
GGAGCTACCGACGGAGCTCCCGAAGCGGGTACCTGCTCCTGTTCCTAGTG
ATGGAGAGGGGGGGGGGCAAGTGGGTTCGGCCTTGGAACCTTTGCAGGGG
GAGACAGAAGCGCAGTATGTGGCGCGGCAGAGACAGTTGAACGAAGAGGC
GAGGCAGAGGATGAAGGCCAAGTTTGGCCCGGCGGGGTTGAGTGGCGGTG
GAGGAGGAGGGAGAATGCAGGGGTTTGGTAGTGATCCCAATTATGACCCT
TCCAAGGGGGGGTTTGGTGGAGGCAAGGGACAGGATATTGGCGGTGAGAT
TATGGGAGCTGTGGGAAAGCTAGGGTTGACGGTGCAGGCGCATTTGCAGG
AGGGGCAGTTGGGGCAAAAGCTGCAGATGGGTTGGAGCAACGTGTCAAGT
CGGGTCCAGGATCCGGAGCTGGCAGCGAAGGTGAAGGAAAAGGCGAGCAC
GGGCTGGTCGGCACTGGCGACTGGGGCGGTGGCGCTTTGGAGTAAGACGG
CTGATTTGACTGTGGACTTGGTGAAGGATATAACGAAGGAGGAGGAAGAA
CCCATGCGATTGTACAATAGGTCAGGAGGGGAGGGAGCGGGGAGAGGAGG
TTTGGTTATGGAGGGATTAGGAAGTAGAAGTGGAAGTAGTAGTAGCAGCA
GCAGCAGCAGTGGTGGTGGTGGATCGGGGATGGGGGGTCAGCAACAGCAT
CAGCAGAGCTCGATGTTGGGCATGGGGACTTCTTCACCTTTTGTCGGCCG
TGGAGGCGGGGGGGGTTGGGAGGGAGTGGAAACGTCTATGGCAAGAGCAG
TAGAGTGA back to topCoding sequence (CDS) from alignment at chr2:409023..410630+ >NO02G01350.1 ID=NO02G01350.1|Name=NO02G01350.1|organism=Nannochloropsis oceanica|type=CDS|length=1233bp|location=Sequence derived from alignment at chr2:409023..410630+ (Nannochloropsis oceanica) ATGCTTTCTGCTCCACCCACGCACTATCACACAGCCTTTCAGCAACAGCT CCAGGACGATACGATGGCCCACTCGATGGATGCCGCAACGGAACGTCGCC TGCGGGAGCTGCCAGGCAACAGGGTCTGCGCCGACTGCCCTGCCCCCAAT CCCCAGTGGGCCAGCGTCTCTTATGGCTGCTTCATCTGCTTGGACTGCTC TGGGCAACATCGTGCATTGGGCGTGCATCTATCGTTTGTCCGCTCTATTA CCATGGATAGTTGGACCGACAAGCAAGTGAAGCTAATGGAGAACGGGGGG AATGAAAAACTGGTTTCGTTCTTGCATCAGAGGGGGGTGGAGAAGAGTCT GCCGATACACAAAAAGTACAATACTCCCGAAGCAGAATTGTATAGGGAGA GGATGAAGGCTTTGGTTGAGGGGAGGGAGCTACCGACGGAGCTCCCGAAG CGGGTACCTGCTCCTGTTCCTAGTGATGGAGAGGGGGGGGGGCAAGTGGG TTCGGCCTTGGAACCTTTGCAGGGGGAGACAGAAGCGCAGTATGTGGCGC GGCAGAGACAGTTGAACGAAGAGGCGAGGCAGAGGATGAAGGCCAAGTTT GGCCCGGCGGGGTTGAGTGGCGGTGGAGGAGGAGGGAGAATGCAGGGGTT TGGTAGTGATCCCAATTATGACCCTTCCAAGGGGGGGTTTGGTGGAGGCA AGGGACAGGATATTGGCGGTGAGATTATGGGAGCTGTGGGAAAGCTAGGG TTGACGGTGCAGGCGCATTTGCAGGAGGGGCAGTTGGGGCAAAAGCTGCA GATGGGTTGGAGCAACGTGTCAAGTCGGGTCCAGGATCCGGAGCTGGCAG CGAAGGTGAAGGAAAAGGCGAGCACGGGCTGGTCGGCACTGGCGACTGGG GCGGTGGCGCTTTGGAGTAAGACGGCTGATTTGACTGTGGACTTGGTGAA GGATATAACGAAGGAGGAGGAAGAACCCATGCGATTGTACAATAGGTCAG GAGGGGAGGGAGCGGGGAGAGGAGGTTTGGTTATGGAGGGATTAGGAAGT AGAAGTGGAAGTAGTAGTAGCAGCAGCAGCAGCAGTGGTGGTGGTGGATC GGGGATGGGGGGTCAGCAACAGCATCAGCAGAGCTCGATGTTGGGCATGG GGACTTCTTCACCTTTTGTCGGCCGTGGAGGCGGGGGGGGTTGGGAGGGA GTGGAAACGTCTATGGCAAGAGCAGTAGAGTGA back to top
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