NO02G01110.1, NO02G01110.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G01110.1
Unique Name	NO02G01110.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2554
Alignment location	chr2:350156..352709 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:350156..352709 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO02G01110.1 vs.

BLAST of NO02G01110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G01110	NO02G01110	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G01110.1	NO02G01110.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G01110.1.cds1	NO02G01110.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:350156..352709-
coding sequence from alignment at chr2:350156..352709-

mRNA sequence

>NO02G01110.1 ID=NO02G01110.1|Name=NO02G01110.1|organism=Nannochloropsis oceanica|type=mRNA|length=2554bp
CTTTTTCTCCCACCCATCGTCCCTATCGACGACCGGACGCGCGAAGGAAG
CCAATGTGGCTACAGCGGCATTGCCGCTGCGGCAATCACAATCACTGGGA
ACTTGATAATCCCTGCGTTCCGAGCTCTTTCAGCACCGAATTATTTGCAT
GGTCTAAAATGAGTCCGCTATTCATCGCAGGGCCCTTTCTGCCTCCATGC
CTCCTCGACCTCCCCTTGGTACCAGAGACCGGCTCCAAACTAGTTCCTTG
GAGGTTCTGCATTCGGTTGAATCTTCCAGCGCTTTCTGCAGTGCGGGGTG
CGGGCCAAAAGATGATGCCCCATATGAAGACCCTCTGCACTAACAAGTAC
TGTAAGAAAATTGACCGGATCTCCTTGCTCTGTCGCAAAGCGACACAGTA
GTTCGGCAGCCCAGCCAATCCAGTCGTCATAGTCGAAACCGACAGGCGTC
TTAAATTCGTGGTGTTGCTTATCTACATCCTCGCAGAAAATCGGGTTGTG
GATTAATCGATGCGAAAACGTGACATCCGTTGCCAGCGCGAACGTCAAAA
TATGCCGGCAACATGTGGGCGCGGGTGGTAGGTGCATGCGCATGCTGCCC
AAGCAGCGCTTTGAATGATAGAAACACCCCACAGTGACGACAGTTGAATC
AAGACTGGACCAACGCGATTCGGTGTTGCCTTCTTTTGCGCGATCGATAA
TTTTCTAATAACGCAAAACGTCCTGCCCCTCAACGGCTGGCCCATCATCC
AATTTTTGTCTTCTTTTGATGGTCACGCCATACACTTTTTTTCGCTGGTG
GCACAGCTTACCCGCAGTCATCGAGATGAAAGCGAAAGGATAGCAAATCC
TTGACGTTGTGGTCCTGCAGTACTGCCCCCTTCACCCCTCGATTTTTTTG
CCAAAATGAAGGCAAAATTCAAGTAGAATGGTCTTACTAGTCAGTTCATT
GAGCCCTCATATCTCCTTCTTAAGATCAATTTCTGAGCAACTCAAAATTT
ATTGAAGGTGCATTCCCTTCAGAGCAAGATCATGCAGCCATTCTCATCGC
CTTACCGGCCCAGCACCCAGCATCTGCCCTTGAGTCCGTTTAGTCCTGCC
AAACATGCAGCTCACACTATCGCCCATGCGATTGCGAAGCGGAAACCCTT
CACCATCCCATCTTACATCTCCGCGGCATCGGAATCAAAAAATCCCTATA
TTCACGACTTTGAAAGTTTACGCCACGAAAATCGTCGGCTCAAGCTTGGA
CTGCGACAAAGCAGGGAAAAAACCCTGCTCCTCCAAACCAAGACCCAACG
CCTGGAAGCCGAAGTGAAACGGCGCGACAGACACATTGAGGTCCTACTCA
CAAATAATAAGAAGCCAGCAGCACTCATCTCAACGCCCCTTCGGCAGGAA
GTCCACAAGATTAGGCAGCACCAGGAAAGGAGCACGGCTATCAAGTCCTT
ACAGCAGGAGCTGGTGACCTTGCGCTCCACCGTGACAAGCTTAAAAGAGA
AGATGCGCTCCCCCAGGGCCAAAATCCTGGTTGAATTGACATCAGAGCGT
GATGAATACTTGGCCGAGGTGATGTATCTACGCGACGCCTTACAGGAGAT
CACTTCCGCAGAGGTGGAGAAAGTCGAGGCCGCGGCGACGAGAGGCCAGG
TCGTGCCCTTAGTCACCAGCTCGCCTGCGGCGGCGACCGAGGCTGAGAAG
AAAGCAAGCATGATAACCGCTGCAGAAATGGTGCCGCGAAAGCCAAAAGC
AATAACAATTAGCGAGCCGTATGACTCGTCGGCACCAGCGGAGGAAGGCT
GTGCCGCCCCGTTGGCAGCCACCACGACGCGAGCCCCACCAACAAACGAG
ACGATGGAGCGCGGAATCCTGCAGCCGCCACCGTTAAATTCATCGTCATC
ACTACCGTTCTCTTCCTCCTCTATACACCCCCCCAAATACGGTTCGTCCT
TTCAATCACTGCCTGTCCGCCCTCAGCAGATTTTTCGGGACTCAATTGTG
TTTCCCAAGCCGACACATTTGGAAGGCACCAAGCTTAACTCGATCTCTGA
GCATGGGCATGACACGGAGGATAGAGAGGGAGAGACAGTGACACCTGTGT
TGTTGGAGGAGGAGGGGCAGAAAGAGCAGGAGGAGGATCAACGAGAGGAG
GCGAAAGATGTCGGGGGTAGTGCTCAGACTGTGACCTCTTCTGTCACCTC
AAACGTACACGGACTGGCTATGGTGAAGGGAAATGGGCAGGAGGAGGAAG
AGCTGGAGGAAGGGGGGGCGTGCCTGTCTAGCTGTTCGCTGTATCTTTCC
CAGCTCTCACTTCTGGGTGTGCTCCTTGACCAGAGTCCCGGAGAGGAGGG
CCGAGAGACCTTGGAAGAGAGCAGGCAGCAAGAGCCCCGCTTGATGACAA
CGCTTGATATGGTGCCGATGGAGGAGGTGGAGGAAGGGGTAGAGAAAAAG
AAGGAAGAGGAAAGAATCAGGGAGATCAAGTAAGGGACGCGCGTGAGTGA
GTAGCAAACAGCGGGGATGAATGGAGAGAAACGGAATAGAAACAGCAGTC
GATG

protein sequence of NO02G01110.1

>NO02G01110.1-protein ID=NO02G01110.1-protein|Name=NO02G01110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=484bp
MQPFSSPYRPSTQHLPLSPFSPAKHAAHTIAHAIAKRKPFTIPSYISAAS
ESKNPYIHDFESLRHENRRLKLGLRQSREKTLLLQTKTQRLEAEVKRRDR
HIEVLLTNNKKPAALISTPLRQEVHKIRQHQERSTAIKSLQQELVTLRST
VTSLKEKMRSPRAKILVELTSERDEYLAEVMYLRDALQEITSAEVEKVEA
AATRGQVVPLVTSSPAAATEAEKKASMITAAEMVPRKPKAITISEPYDSS
APAEEGCAAPLAATTTRAPPTNETMERGILQPPPLNSSSSLPFSSSSIHP
PKYGSSFQSLPVRPQQIFRDSIVFPKPTHLEGTKLNSISEHGHDTEDREG
ETVTPVLLEEEGQKEQEEDQREEAKDVGGSAQTVTSSVTSNVHGLAMVKG
NGQEEEELEEGGACLSSCSLYLSQLSLLGVLLDQSPGEEGRETLEESRQQ
EPRLMTTLDMVPMEEVEEGVEKKKEEERIREIK*

mRNA from alignment at chr2:350156..352709-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G01110.1 ID=NO02G01110.1|Name=NO02G01110.1|organism=Nannochloropsis oceanica|type=mRNA|length=2554bp|location=Sequence derived from alignment at chr2:350156..352709- (Nannochloropsis oceanica)
CTTTTTCTCCCACCCATCGTCCCTATCGACGACCGGACGCGCGAAGGAAG
CCAATGTGGCTACAGCGGCATTGCCGCTGCGGCAATCACAATCACTGGGA
ACTTGATAATCCCTGCGTTCCGAGCTCTTTCAGCACCGAATTATTTGCAT
GGTCTAAAATGAGTCCGCTATTCATCGCAGGGCCCTTTCTGCCTCCATGC
CTCCTCGACCTCCCCTTGGTACCAGAGACCGGCTCCAAACTAGTTCCTTG
GAGGTTCTGCATTCGGTTGAATCTTCCAGCGCTTTCTGCAGTGCGGGGTG
CGGGCCAAAAGATGATGCCCCATATGAAGACCCTCTGCACTAACAAGTAC
TGTAAGAAAATTGACCGGATCTCCTTGCTCTGTCGCAAAGCGACACAGTA
GTTCGGCAGCCCAGCCAATCCAGTCGTCATAGTCGAAACCGACAGGCGTC
TTAAATTCGTGGTGTTGCTTATCTACATCCTCGCAGAAAATCGGGTTGTG
GATTAATCGATGCGAAAACGTGACATCCGTTGCCAGCGCGAACGTCAAAA
TATGCCGGCAACATGTGGGCGCGGGTGGTAGGTGCATGCGCATGCTGCCC
AAGCAGCGCTTTGAATGATAGAAACACCCCACAGTGACGACAGTTGAATC
AAGACTGGACCAACGCGATTCGGTGTTGCCTTCTTTTGCGCGATCGATAA
TTTTCTAATAACGCAAAACGTCCTGCCCCTCAACGGCTGGCCCATCATCC
AATTTTTGTCTTCTTTTGATGGTCACGCCATACACTTTTTTTCGCTGGTG
GCACAGCTTACCCGCAGTCATCGAGATGAAAGCGAAAGGATAGCAAATCC
TTGACGTTGTGGTCCTGCAGTACTGCCCCCTTCACCCCTCGATTTTTTTG
CCAAAATGAAGGCAAAATTCAAGTAGAATGGTCTTACTAGTCAGTTCATT
GAGCCCTCATATCTCCTTCTTAAGATCAATTTCTGAGCAACTCAAAATTT
ATTGAAGGTGCATTCCCTTCAGAGCAAGATCATGCAGCCATTCTCATCGC
CTTACCGGCCCAGCACCCAGCATCTGCCCTTGAGTCCGTTTAGTCCTGCC
AAACATGCAGCTCACACTATCGCCCATGCGATTGCGAAGCGGAAACCCTT
CACCATCCCATCTTACATCTCCGCGGCATCGGAATCAAAAAATCCCTATA
TTCACGACTTTGAAAGTTTACGCCACGAAAATCGTCGGCTCAAGCTTGGA
CTGCGACAAAGCAGGGAAAAAACCCTGCTCCTCCAAACCAAGACCCAACG
CCTGGAAGCCGAAGTGAAACGGCGCGACAGACACATTGAGGTCCTACTCA
CAAATAATAAGAAGCCAGCAGCACTCATCTCAACGCCCCTTCGGCAGGAA
GTCCACAAGATTAGGCAGCACCAGGAAAGGAGCACGGCTATCAAGTCCTT
ACAGCAGGAGCTGGTGACCTTGCGCTCCACCGTGACAAGCTTAAAAGAGA
AGATGCGCTCCCCCAGGGCCAAAATCCTGGTTGAATTGACATCAGAGCGT
GATGAATACTTGGCCGAGGTGATGTATCTACGCGACGCCTTACAGGAGAT
CACTTCCGCAGAGGTGGAGAAAGTCGAGGCCGCGGCGACGAGAGGCCAGG
TCGTGCCCTTAGTCACCAGCTCGCCTGCGGCGGCGACCGAGGCTGAGAAG
AAAGCAAGCATGATAACCGCTGCAGAAATGGTGCCGCGAAAGCCAAAAGC
AATAACAATTAGCGAGCCGTATGACTCGTCGGCACCAGCGGAGGAAGGCT
GTGCCGCCCCGTTGGCAGCCACCACGACGCGAGCCCCACCAACAAACGAG
ACGATGGAGCGCGGAATCCTGCAGCCGCCACCGTTAAATTCATCGTCATC
ACTACCGTTCTCTTCCTCCTCTATACACCCCCCCAAATACGGTTCGTCCT
TTCAATCACTGCCTGTCCGCCCTCAGCAGATTTTTCGGGACTCAATTGTG
TTTCCCAAGCCGACACATTTGGAAGGCACCAAGCTTAACTCGATCTCTGA
GCATGGGCATGACACGGAGGATAGAGAGGGAGAGACAGTGACACCTGTGT
TGTTGGAGGAGGAGGGGCAGAAAGAGCAGGAGGAGGATCAACGAGAGGAG
GCGAAAGATGTCGGGGGTAGTGCTCAGACTGTGACCTCTTCTGTCACCTC
AAACGTACACGGACTGGCTATGGTGAAGGGAAATGGGCAGGAGGAGGAAG
AGCTGGAGGAAGGGGGGGCGTGCCTGTCTAGCTGTTCGCTGTATCTTTCC
CAGCTCTCACTTCTGGGTGTGCTCCTTGACCAGAGTCCCGGAGAGGAGGG
CCGAGAGACCTTGGAAGAGAGCAGGCAGCAAGAGCCCCGCTTGATGACAA
CGCTTGATATGGTGCCGATGGAGGAGGTGGAGGAAGGGGTAGAGAAAAAG
AAGGAAGAGGAAAGAATCAGGGAGATCAAGTAAGGGACGCGCGTGAGTGA
GTAGCAAACAGCGGGGATGAATGGAGAGAAACGGAATAGAAACAGCAGTC
GATG

Coding sequence (CDS) from alignment at chr2:350156..352709-

>NO02G01110.1 ID=NO02G01110.1|Name=NO02G01110.1|organism=Nannochloropsis oceanica|type=CDS|length=1452bp|location=Sequence derived from alignment at chr2:350156..352709- (Nannochloropsis oceanica)
ATGCAGCCATTCTCATCGCCTTACCGGCCCAGCACCCAGCATCTGCCCTT
GAGTCCGTTTAGTCCTGCCAAACATGCAGCTCACACTATCGCCCATGCGA
TTGCGAAGCGGAAACCCTTCACCATCCCATCTTACATCTCCGCGGCATCG
GAATCAAAAAATCCCTATATTCACGACTTTGAAAGTTTACGCCACGAAAA
TCGTCGGCTCAAGCTTGGACTGCGACAAAGCAGGGAAAAAACCCTGCTCC
TCCAAACCAAGACCCAACGCCTGGAAGCCGAAGTGAAACGGCGCGACAGA
CACATTGAGGTCCTACTCACAAATAATAAGAAGCCAGCAGCACTCATCTC
AACGCCCCTTCGGCAGGAAGTCCACAAGATTAGGCAGCACCAGGAAAGGA
GCACGGCTATCAAGTCCTTACAGCAGGAGCTGGTGACCTTGCGCTCCACC
GTGACAAGCTTAAAAGAGAAGATGCGCTCCCCCAGGGCCAAAATCCTGGT
TGAATTGACATCAGAGCGTGATGAATACTTGGCCGAGGTGATGTATCTAC
GCGACGCCTTACAGGAGATCACTTCCGCAGAGGTGGAGAAAGTCGAGGCC
GCGGCGACGAGAGGCCAGGTCGTGCCCTTAGTCACCAGCTCGCCTGCGGC
GGCGACCGAGGCTGAGAAGAAAGCAAGCATGATAACCGCTGCAGAAATGG
TGCCGCGAAAGCCAAAAGCAATAACAATTAGCGAGCCGTATGACTCGTCG
GCACCAGCGGAGGAAGGCTGTGCCGCCCCGTTGGCAGCCACCACGACGCG
AGCCCCACCAACAAACGAGACGATGGAGCGCGGAATCCTGCAGCCGCCAC
CGTTAAATTCATCGTCATCACTACCGTTCTCTTCCTCCTCTATACACCCC
CCCAAATACGGTTCGTCCTTTCAATCACTGCCTGTCCGCCCTCAGCAGAT
TTTTCGGGACTCAATTGTGTTTCCCAAGCCGACACATTTGGAAGGCACCA
AGCTTAACTCGATCTCTGAGCATGGGCATGACACGGAGGATAGAGAGGGA
GAGACAGTGACACCTGTGTTGTTGGAGGAGGAGGGGCAGAAAGAGCAGGA
GGAGGATCAACGAGAGGAGGCGAAAGATGTCGGGGGTAGTGCTCAGACTG
TGACCTCTTCTGTCACCTCAAACGTACACGGACTGGCTATGGTGAAGGGA
AATGGGCAGGAGGAGGAAGAGCTGGAGGAAGGGGGGGCGTGCCTGTCTAG
CTGTTCGCTGTATCTTTCCCAGCTCTCACTTCTGGGTGTGCTCCTTGACC
AGAGTCCCGGAGAGGAGGGCCGAGAGACCTTGGAAGAGAGCAGGCAGCAA
GAGCCCCGCTTGATGACAACGCTTGATATGGTGCCGATGGAGGAGGTGGA
GGAAGGGGTAGAGAAAAAGAAGGAAGAGGAAAGAATCAGGGAGATCAAGT
AA

Synonyms

Publications