NO02G00980.1, NO02G00980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00980.1
Unique NameNO02G00980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length684
Alignment locationchr2:306866..307549 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:306866..307549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G00980.1 vs.
Match: EWM30547.1 (putative fkbp-type peptidyl-prolyl cis-trans isomerase chloroplastic-like protein [Nannochloropsis gaditana])

HSP 1 Score: 341.7 bits (875), Expect = 1.800e-90
Identity = 179/229 (78.17%), Postives = 191/229 (83.41%), Query Frame = 0 
Query:    1 MKVVASLLALVVLPLTSSFFVVPAPACTQQQQQQQLAR--GLVALEAEGGMSRRDAFLKTAGLLSLGLVAGSTGGLPFLPRAGAESLPSGITYEVVENGNGPVPKVGELAAIRFTGAYKGNVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKVMKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAAVEYDLTLVALPGRETEILDLDNFDENAPASDDSDPNKGLRF 228
            MKV+ S   L+ LP  SSF      A T ++    L        LEAEGGMSRRDA  KTAGLLSLGL  GS+ GL  LPRAGAE+LP GITYEV+E GNGP+P+VGELAAIRFTGAYK NVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKVMKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMA VEYDLTLVALPGRETE++DLD+FDENAPASDDSDPNKGLRF
Sbjct:    1 MKVMISGWTLLFLPCASSFLAPSTLAITNKKDAIVLNEKGSPTVLEAEGGMSRRDALFKTAGLLSLGLAMGSSRGLISLPRAGAETLPGGITYEVLEKGNGPIPQVGELAAIRFTGAYKDNVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKVMKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAPVEYDLTLVALPGRETEVIDLDSFDENAPASDDSDPNKGLRF 229
The following BLAST results are available for this feature:
BLAST of NO02G00980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30547.11.800e-9078.17putative fkbp-type peptidyl-prolyl cis-trans isome... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00980NO02G00980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00980.1NO02G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00980.1.cds1NO02G00980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00980.1 ID=NO02G00980.1|Name=NO02G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=684bp
ATGAAGGTAGTAGCTTCGTTGCTGGCCCTCGTGGTGCTGCCTTTGACATC
ATCCTTCTTTGTCGTACCTGCCCCTGCGTGCACACAGCAGCAGCAACAGC
AGCAGCTTGCGCGGGGTCTGGTGGCGCTGGAAGCGGAGGGGGGCATGTCC
AGAAGAGACGCCTTCCTGAAGACGGCGGGCCTGCTCTCTCTTGGCCTCGT
CGCAGGCAGCACTGGGGGGCTACCTTTCCTGCCACGGGCAGGGGCCGAGT
CCTTGCCAAGTGGGATTACTTATGAGGTGGTTGAGAATGGCAACGGTCCG
GTGCCCAAGGTGGGGGAGCTGGCCGCCATCCGCTTCACAGGCGCATACAA
GGGTAATGTGTTCGACGACCTGTACAAGACCAAGGAACCTCTCTACTTCC
GTGTGGGGGGCAACACCCTCCTGAAAGGCATCGAGGAGGCGGTCAAGGTC
ATGAAAGTTGGAGATCGTTGGAAGCTCACAATTCCGGGCGAGCTGGCATT
CGGTGCCAAGGGCCGGTCGGCCTCCCCGGGCAAGCCCCGTATTCCCCCTA
TGGCGGCAGTGGAGTACGATTTGACACTAGTGGCGCTGCCAGGCCGTGAG
ACGGAGATTTTGGATCTAGACAACTTTGATGAGAATGCGCCCGCGTCGGA
TGACTCGGACCCAAACAAGGGGTTGCGATTTTAG
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protein sequence of NO02G00980.1

>NO02G00980.1-protein ID=NO02G00980.1-protein|Name=NO02G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MKVVASLLALVVLPLTSSFFVVPAPACTQQQQQQQLARGLVALEAEGGMS
RRDAFLKTAGLLSLGLVAGSTGGLPFLPRAGAESLPSGITYEVVENGNGP
VPKVGELAAIRFTGAYKGNVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKV
MKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAAVEYDLTLVALPGRE
TEILDLDNFDENAPASDDSDPNKGLRF*
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mRNA from alignment at chr2:306866..307549+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00980.1 ID=NO02G00980.1|Name=NO02G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=684bp|location=Sequence derived from alignment at chr2:306866..307549+ (Nannochloropsis oceanica)
ATGAAGGTAGTAGCTTCGTTGCTGGCCCTCGTGGTGCTGCCTTTGACATC
ATCCTTCTTTGTCGTACCTGCCCCTGCGTGCACACAGCAGCAGCAACAGC
AGCAGCTTGCGCGGGGTCTGGTGGCGCTGGAAGCGGAGGGGGGCATGTCC
AGAAGAGACGCCTTCCTGAAGACGGCGGGCCTGCTCTCTCTTGGCCTCGT
CGCAGGCAGCACTGGGGGGCTACCTTTCCTGCCACGGGCAGGGGCCGAGT
CCTTGCCAAGTGGGATTACTTATGAGGTGGTTGAGAATGGCAACGGTCCG
GTGCCCAAGGTGGGGGAGCTGGCCGCCATCCGCTTCACAGGCGCATACAA
GGGTAATGTGTTCGACGACCTGTACAAGACCAAGGAACCTCTCTACTTCC
GTGTGGGGGGCAACACCCTCCTGAAAGGCATCGAGGAGGCGGTCAAGGTC
ATGAAAGTTGGAGATCGTTGGAAGCTCACAATTCCGGGCGAGCTGGCATT
CGGTGCCAAGGGCCGGTCGGCCTCCCCGGGCAAGCCCCGTATTCCCCCTA
TGGCGGCAGTGGAGTACGATTTGACACTAGTGGCGCTGCCAGGCCGTGAG
ACGGAGATTTTGGATCTAGACAACTTTGATGAGAATGCGCCCGCGTCGGA
TGACTCGGACCCAAACAAGGGGTTGCGATTTTAG
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Coding sequence (CDS) from alignment at chr2:306866..307549+

>NO02G00980.1 ID=NO02G00980.1|Name=NO02G00980.1|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at chr2:306866..307549+ (Nannochloropsis oceanica)
ATGAAGGTAGTAGCTTCGTTGCTGGCCCTCGTGGTGCTGCCTTTGACATC
ATCCTTCTTTGTCGTACCTGCCCCTGCGTGCACACAGCAGCAGCAACAGC
AGCAGCTTGCGCGGGGTCTGGTGGCGCTGGAAGCGGAGGGGGGCATGTCC
AGAAGAGACGCCTTCCTGAAGACGGCGGGCCTGCTCTCTCTTGGCCTCGT
CGCAGGCAGCACTGGGGGGCTACCTTTCCTGCCACGGGCAGGGGCCGAGT
CCTTGCCAAGTGGGATTACTTATGAGGTGGTTGAGAATGGCAACGGTCCG
GTGCCCAAGGTGGGGGAGCTGGCCGCCATCCGCTTCACAGGCGCATACAA
GGGTAATGTGTTCGACGACCTGTACAAGACCAAGGAACCTCTCTACTTCC
GTGTGGGGGGCAACACCCTCCTGAAAGGCATCGAGGAGGCGGTCAAGGTC
ATGAAAGTTGGAGATCGTTGGAAGCTCACAATTCCGGGCGAGCTGGCATT
CGGTGCCAAGGGCCGGTCGGCCTCCCCGGGCAAGCCCCGTATTCCCCCTA
TGGCGGCAGTGGAGTACGATTTGACACTAGTGGCGCTGCCAGGCCGTGAG
ACGGAGATTTTGGATCTAGACAACTTTGATGAGAATGCGCCCGCGTCGGA
TGACTCGGACCCAAACAAGGGGTTGCGATTTTAG
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Synonyms
Publications