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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr2 | genome | chr2:273400..276237 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00850.4 vs.
Match: EWM30570.1 (protein of unknown function DUF4033 [Nannochloropsis gaditana]; EWM30571.1 protein of unknown function DUF4033 [Nannochloropsis gaditana]) HSP 1 Score: 330.1 bits (845), Expect = 6.800e-87 Identity = 179/285 (62.81%), Postives = 212/285 (74.39%), Query Frame = 0
Query: 6 SSSKAGGGEV-KAVAPQGPAQRRA--RRRNITF-QLPLLIIVIFVALAGSAQAFIRL---RPSPSSSSSSSCPAPRLLTQAHLFGLGGRSDNKNKSSPTGMKAPTPRPFAPENMATYDDDLFAKIWIFLFSGKIAAVVGVPSPRRFIEYEEYVRLSQLLLKAGSTKAKTAVLTVLRSIAFPGFSSIFRTLFPGTSRFACEFNAKVTPVFFSWLVGPAVVETSEMRNPKTDEVEVWANSVKIQRCRYLESVQCKGACASICKLPTQAFFTEDLGMPVTMTPNFDDL 284
S+S GG EV K P ++ R+ RRR++ ++++ + G A AF L R + +S +S P P + LFG GG+ NK+S G + P+PFAPE M Y+DD+FAKIWIFLF+GKIAAVVG PSPR FI YEEYVRLS+LLL+ GSTKAK+AVL+VLRSIAFPGFSSIFR LFPG+SR ACEFNA+VTP+FFSWLVGPA VETSEM NP T E+W+NSVKI+RCRYLESVQCKGAC SICKLPTQ FFTEDLGMPVTMTPNF+DL
Sbjct: 30 STSHNGGREVIKIEIPAAWSKPRSTYRRRHLRLIATHFFVLIVLCVIIGRACAFAPLHTRRIALPTSPFASRPPPNF--RRFLFGFGGKDSQTNKNS--GNSSLKPKPFAPERMVKYNDDIFAKIWIFLFTGKIAAVVGAPSPRNFIPYEEYVRLSRLLLRGGSTKAKSAVLSVLRSIAFPGFSSIFRALFPGSSRLACEFNARVTPIFFSWLVGPAKVETSEMLNPVTGARELWSNSVKIERCRYLESVQCKGACVSICKLPTQTFFTEDLGMPVTMTPNFEDL 310
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00850.4 ID=NO02G00850.4|Name=NO02G00850.4|organism=Nannochloropsis oceanica|type=mRNA|length=2694bp
GATGAGGCTCCTGTTCCTGTTGTTGAGGGGTGTGTGCGTGGGAAGGCGTG
AGGCGCAAGGGCTGGGAGCGTTAAGGCTGGCTGCTCTCATCAGTTCAAAG
CAGAAACAAAGAGTGATGGTCCTAGCCGACCGATGTTTGATGGAGCAAAA
CCCACGCGGCTTCCACTATGCTGTCCAAGCTATCGATTAGGGCCTGCCTG
GACATTGCGTTGCGGATGGTCAGATCGTGTGATTGTTTGGGTGGGGGGCG
TGAGGCGTAAAGTAGTGAGGAAGGCTCGCCAGCCTGGGTTTGGAGAAGCA
AGCCCATGACGGTGATGATGGAACGGTCGAGTAAGGCAGTTCAAGATCCT
CCTTGAGTGGCATGCATGTTGTCCATCTAATAGCCTCACGCCCTCTCGGT
AAAAATGCACAGGCCACAACAAAACAGCCAAAAGCATCAGTACAAAGACG
ACGATATAAGCTCCCCCAGCGGAACTGTGATTCCCACACCCCATGGTGCC
TTCACCGTCATCATCTAAGGCAGGGGGTGGGGAGGTGAAGGCAGTAGCTC
CTCAAGGACCCGCACAACGACGCGCAAGAAGAAGAAATATTACATTCCAG
CTACCTCTACTTATCATCGTCATCTTTGTCGCTTTAGCAGGCAGTGCGCA
GGCCTTTATACGCCTTCGGCCCTCTCCATCCTCCTCCTCCTCCTCTTCCT
GCCCTGCTCCACGCCTCCTTACCCAAGCCCACCTTTTTGGCCTCGGCGGC
CGCAGCGACAATAAAAACAAAAGCAGCCCAACAGGCATGAAAGCGCCAAC
TCCTAGACCTTTTGCGCCTGAGAACATGGCCACATATGACGACGACCTCT
TTGCTAAAATCTGGATTTTCCTCTTCAGTGGCAAAATTGCTGCCGTGGTC
GGCGTCCCTTCCCCCCGCCGCTTCATCGAATACGAGGAATACGTCCGTCT
CTCTCAGCTTCTGCTGAAGGCAGGATCAACCAAGGCAAAAACTGCTGTGT
TGACCGTCTTGCGCTCCATTGCCTTTCCGGGGTTTTCCTCCATTTTTCGC
ACGCTTTTTCCTGGCACCTCGCGATTTGCCTGTGAGTTTAATGCCAAAGT
AACGCCGGTGTTTTTCAGCTGGTTGGTGGGGCCGGCGGTGGTGGAGACGT
CGGAGATGCGGAATCCGAAGACGGATGAGGTCGAGGTATGGGCCAATAGT
GTGAAGATTCAGCGGTGCCGGTACCTGGAGAGCGTCCAGTGCAAGGGGGC
GTGTGCCAGCATCTGCAAGCTCCCGACCCAAGCGTTCTTTACGGAGGATT
TGGGTATGCCCGTGACCATGACGCCAAATTTTGATGATTTGAGGTAGGGA
CAAGGGGATGGAAGGAGGAGAATAAGGGAAGGGGCGAGGGAGACTCTTCC
CCCCTGCCTCTTCCAACAACTCAACTTGCACCTACACGCGCCGTTTTAGG
GAAATATCTCGCCCACTTTGCGGAGAGAGAGGAGAAGCTAAGAGATGAAG
GGACTTTGCGGCCAGACATTGACTACGAGACACACAAGCTAACCCCTCTC
CTTCTTGTCTTCTCACAAAGCCTGCGCTTGGGTGTCGGTCAACAAACTAC
ATGTATCTTGACAGATGCTCATCAGCTCTTCTTCTATATCACCCACTTCC
TTTCTCCTCTTTCCCCTTCCTCCCATCCTCCCTCATGCAGTTGCACCATG
ACCTTCGGCGTGGCCCCTTTGGCCTCCTCCGCCGACCCTATTTGCTCCGA
AGGATGCTTCAAAGAGTGCTCAAGCGCCATCATCTCCAAGAAAGCCTGCC
CCAAGATCATGGCAGCTTTGAATGGGGGGGAGTAAGCAGAGAGGGAGGAG
GGGGAAGAGGTATGTATGTATATATTTACATATGTATATAAATGTGTGTG
TGTGTGTGTAGGTGTGTGTGTGTGGGTGGGTGTGAGCGAATGTCTTGTTT
TTGTTAGTTGTCTCTGCCTGTCTGGTGATAGGGGGAAGAGGCAGGACGGT
GTATGCACAAAACTTGCCAAAAACGAATGGTAGAATTTGAAAGACGTGTA
AGAGATCAAAAGAATGACCAGAGAAGGAGGCTGTTGGTTCTCTCGCACTA
CCTTGTGGTGTCTTCCTTCCGCCCCTTGTGCCTCTCCTTTCCTCCTGAAA
AGGAAGAAGAAGAAGGTTGCGTTTTTGATGGGACTGAAAGGGATTGAAAG
AGGAACTCGATAGACGATGAAGTCGGCCTCCTAGAAGGATAGAAATAGGG
CTGGACGAACAACTTGCCTCTCAATGGAATGAGATTGGCTCGCTACAGTC
CCTGCCCACAATGGTGCATATGGTGTGAGGGTGTGTCTGTTCAAAATGCA
GAAGGGTTTCAGTACATTTACACTGATGCAAGATCAATTGCGGGGGGTAG
AGACGAGTTTTTCATTTTGTGAGATTGATTTGGAACGTGATTAAGTCTCA
AGTATGTCGAAATATTGTATTGTTTTAATCCGATTTTAGATGGAGGGCGT
GCTGACCAATCTCCCCACCCTCACTTCCTTCTCCAACTCGTACAAGCAGG
CATGTGGGAAACAGAATTGCCCGCGCGGCGTCGTAAATAGTACGTTCTGG
TTGAAAAATAAACAGTAAATAAAAGGTCTCAAGAAAAGACTCGTTGGATT
CTTTTACTTTCACTTTTGCTTGCTTTGCCATGGCTGTTTCGTTG back to topprotein sequence of NO02G00850.4 >NO02G00850.4-protein ID=NO02G00850.4-protein|Name=NO02G00850.4|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MVPSPSSSKAGGGEVKAVAPQGPAQRRARRRNITFQLPLLIIVIFVALAG
SAQAFIRLRPSPSSSSSSSCPAPRLLTQAHLFGLGGRSDNKNKSSPTGMK
APTPRPFAPENMATYDDDLFAKIWIFLFSGKIAAVVGVPSPRRFIEYEEY
VRLSQLLLKAGSTKAKTAVLTVLRSIAFPGFSSIFRTLFPGTSRFACEFN
AKVTPVFFSWLVGPAVVETSEMRNPKTDEVEVWANSVKIQRCRYLESVQC
KGACASICKLPTQAFFTEDLGMPVTMTPNFDDLR* back to topmRNA from alignment at chr2:273400..276237+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00850.4 ID=NO02G00850.4|Name=NO02G00850.4|organism=Nannochloropsis oceanica|type=mRNA|length=2838bp|location=Sequence derived from alignment at chr2:273400..276237+ (Nannochloropsis oceanica)
GATGAGGCTCCTGTTCCTGTTGTTGAGGGGTGTGTGCGTGGGAAGGCGTG
AGGCGCAAGGGCTGGGAGCGTTAAGGCTGGCTGCTCTCATCAGTTCAAAG
CAGAAACAAAGAGTGATGGTCCTAGCCGACCGATGTTTGATGGAGCAAAA
CCCACGCGGCTTCCACTATGCTGTCCAAGCTATCGATTAGGGCCTGCCTG
GACATTGCGTTGCGGATGGTCAGATCGTGTGATTGTTTGGGTGGGGGGCG
TGAGGCGTAAAGTAGTGAGGAAGGCTCGCCAGCCTGGGTTTGGAGAAGCA
AGCCCATGACGGTGATGATGGAACGGTCGAGTAAGGCAGTTCAAGATCCT
CCTTGAGTGGCATGCATGTTGTCCATCTAATAGCCTCACGCCCTCTCGGT
AAAAATGCACAGGCCACAACAAAACAGCCAAAAGCATCAGTACAAAGACG
ACGATATAAGCTCCCCCAGCGGAACTGTGATTCCCACACCCCATGGTGCC
TTCACCGTCATCATCTAAGGCAGGGGGTGGGGAGGTGAAGGCAGTAGCTC
CTCAAGGACCCGCACAACGACGCGCAAGAAGAAGAAATATTACATTCCAG
CTACCTCTACTTATCATCGTCATCTTTGTCGCTTTAGCAGGCAGTGCGCA
GGCCTTTATACGCCTTCGGCCCTCTCCATCCTCCTCCTCCTCCTCTTCCT
GCCCTGCTCCACGCCTCCTTACCCAAGCCCACCTTTTTGGCCTCGGCGGC
CGCAGCGACAATAAAAACAAAAGCAGCCCAACAGGCATGAAAGCGCCAAC
TCCTAGACCTTTTGCGCCTGAGAACATGGCCACATATGACGACGACCTCT
TTGCTAAAATCTGGATTTTCCTCTTCAGTGGCAAAATTGCTGCCGTGGTC
GGCGTCCCTTCCCCCCGCCGCTTCATCGAATACGAGGAATACGTCCGTCT
CTCTCAGCTTCTGCTGAAGGCAGGATCAACCAAGGCAAAAACTGCTGTGT
TGACCGTCTTGCGCTCCATTGCCTTTCCGGGGTTTTCCTCCATTTTTCGC
ACGCTTTTTCCTGGCACCTCGCGATTTGCCTGTGAGTTTAATGCCAAAGT
AACGCCGGTGTTTTTCAGCTGGTTGGTGGGGCCGGCGGTGGTGGAGACGT
CGGAGATGCGGAATCCGAAGACGTGCGTAATTTTGGAGGGAGGGAAGGGG
GGAGAGAAGGGAGGGAGGGAGGGAGAGTGGGTGCGCGGCTTGGGTAGATC
CGTAGGGGGGAAGGGAAGGCCAACGCACTTACACAAGTACGAACAAATCA
CATTCTACTCCCACAGGGATGAGGTCGAGGTATGGGCCAATAGTGTGAAG
ATTCAGCGGTGCCGGTACCTGGAGAGCGTCCAGTGCAAGGGGGCGTGTGC
CAGCATCTGCAAGCTCCCGACCCAAGCGTTCTTTACGGAGGATTTGGGTA
TGCCCGTGACCATGACGCCAAATTTTGATGATTTGAGGTAGGGACAAGGG
GATGGAAGGAGGAGAATAAGGGAAGGGGCGAGGGAGACTCTTCCCCCCTG
CCTCTTCCAACAACTCAACTTGCACCTACACGCGCCGTTTTAGGGAAATA
TCTCGCCCACTTTGCGGAGAGAGAGGAGAAGCTAAGAGATGAAGGGACTT
TGCGGCCAGACATTGACTACGAGACACACAAGCTAACCCCTCTCCTTCTT
GTCTTCTCACAAAGCCTGCGCTTGGGTGTCGGTCAACAAACTACATGTAT
CTTGACAGATGCTCATCAGCTCTTCTTCTATATCACCCACTTCCTTTCTC
CTCTTTCCCCTTCCTCCCATCCTCCCTCATGCAGTTGCACCATGACCTTC
GGCGTGGCCCCTTTGGCCTCCTCCGCCGACCCTATTTGCTCCGAAGGATG
CTTCAAAGAGTGCTCAAGCGCCATCATCTCCAAGAAAGCCTGCCCCAAGA
TCATGGCAGCTTTGAATGGGGGGGAGTAAGCAGAGAGGGAGGAGGGGGAA
GAGGTATGTATGTATATATTTACATATGTATATAAATGTGTGTGTGTGTG
TGTAGGTGTGTGTGTGTGGGTGGGTGTGAGCGAATGTCTTGTTTTTGTTA
GTTGTCTCTGCCTGTCTGGTGATAGGGGGAAGAGGCAGGACGGTGTATGC
ACAAAACTTGCCAAAAACGAATGGTAGAATTTGAAAGACGTGTAAGAGAT
CAAAAGAATGACCAGAGAAGGAGGCTGTTGGTTCTCTCGCACTACCTTGT
GGTGTCTTCCTTCCGCCCCTTGTGCCTCTCCTTTCCTCCTGAAAAGGAAG
AAGAAGAAGGTTGCGTTTTTGATGGGACTGAAAGGGATTGAAAGAGGAAC
TCGATAGACGATGAAGTCGGCCTCCTAGAAGGATAGAAATAGGGCTGGAC
GAACAACTTGCCTCTCAATGGAATGAGATTGGCTCGCTACAGTCCCTGCC
CACAATGGTGCATATGGTGTGAGGGTGTGTCTGTTCAAAATGCAGAAGGG
TTTCAGTACATTTACACTGATGCAAGATCAATTGCGGGGGGTAGAGACGA
GTTTTTCATTTTGTGAGATTGATTTGGAACGTGATTAAGTCTCAAGTATG
TCGAAATATTGTATTGTTTTAATCCGATTTTAGATGGAGGGCGTGCTGAC
CAATCTCCCCACCCTCACTTCCTTCTCCAACTCGTACAAGCAGGCATGTG
GGAAACAGAATTGCCCGCGCGGCGTCGTAAATAGTACGTTCTGGTTGAAA
AATAAACAGTAAATAAAAGGTCTCAAGAAAAGACTCGTTGGATTCTTTTA
CTTTCACTTTTGCTTGCTTTGCCATGGCTGTTTCGTTG back to topCoding sequence (CDS) from alignment at chr2:273400..276237+ >NO02G00850.4 ID=NO02G00850.4|Name=NO02G00850.4|organism=Nannochloropsis oceanica|type=CDS|length=855bp|location=Sequence derived from alignment at chr2:273400..276237+ (Nannochloropsis oceanica)
ATGGTGCCTTCACCGTCATCATCTAAGGCAGGGGGTGGGGAGGTGAAGGC
AGTAGCTCCTCAAGGACCCGCACAACGACGCGCAAGAAGAAGAAATATTA
CATTCCAGCTACCTCTACTTATCATCGTCATCTTTGTCGCTTTAGCAGGC
AGTGCGCAGGCCTTTATACGCCTTCGGCCCTCTCCATCCTCCTCCTCCTC
CTCTTCCTGCCCTGCTCCACGCCTCCTTACCCAAGCCCACCTTTTTGGCC
TCGGCGGCCGCAGCGACAATAAAAACAAAAGCAGCCCAACAGGCATGAAA
GCGCCAACTCCTAGACCTTTTGCGCCTGAGAACATGGCCACATATGACGA
CGACCTCTTTGCTAAAATCTGGATTTTCCTCTTCAGTGGCAAAATTGCTG
CCGTGGTCGGCGTCCCTTCCCCCCGCCGCTTCATCGAATACGAGGAATAC
GTCCGTCTCTCTCAGCTTCTGCTGAAGGCAGGATCAACCAAGGCAAAAAC
TGCTGTGTTGACCGTCTTGCGCTCCATTGCCTTTCCGGGGTTTTCCTCCA
TTTTTCGCACGCTTTTTCCTGGCACCTCGCGATTTGCCTGTGAGTTTAAT
GCCAAAGTAACGCCGGTGTTTTTCAGCTGGTTGGTGGGGCCGGCGGTGGT
GGAGACGTCGGAGATGCGGAATCCGAAGACGGATGAGGTCGAGGTATGGG
CCAATAGTGTGAAGATTCAGCGGTGCCGGTACCTGGAGAGCGTCCAGTGC
AAGGGGGCGTGTGCCAGCATCTGCAAGCTCCCGACCCAAGCGTTCTTTAC
GGAGGATTTGGGTATGCCCGTGACCATGACGCCAAATTTTGATGATTTGA
GGTAG back to top
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