NO01G05690.3, NO01G05690.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G05690.3
Unique Name	NO01G05690.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1787
Alignment location	chr1:1587238..1591107 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:1587238..1591107 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO01G05690.3 vs.
Match: CBN80098.1 (Chorismate Synthase [Ectocarpus siliculosus])

HSP 1 Score: 583.6 bits (1503), Expect = 4.800e-163
Identity = 292/379 (77.04%), Postives = 334/379 (88.13%), Query Frame = 0

Query:   22 QLFRISTFGESHGGGVGVVVDGCPPRVEITREEIQQELDRRRPGQSRLTTPRNEADSVEILSGVSVDGLTLGTPIGMLVRNQDHRSNDYDTNSVAYRPSHADATYDAKYGLRAIAGGGRSSARETIGRVAAAAVAKKVLSMWSGIEIMGYVKKVQEIEAT-VDPETVTMAAVEANIARCPDEETAQKMIARIDEIRKTGNSVGGVVECIARNVPAGLGSPVFDKLEAELAKACMSLPASKGFEVGSGFEGTLLTGKTHNDEFYVDEHGRTRTRTNRSGGIQGGISNGETIIIRVCFKPTSTIGQEQATVTRAGEETTMRGKGRHDPCVLPRAVPMVEAMMALVLVDALMSQEAQCNLFPRVEGAGEGMHINPLGKKVEG 400
            +LFRIST+GESHGGGVGV +DGCPP++ +T ++IQ ELDRR+PGQSR+TTPRNE D VEILSG+S +GLTLGTPI MLVRN+D RS DYDT S+AYRPSHADATYDAKYG+RA+AGGGRSSARETIGRVAAAAVA+K+LS++SG E++GYVK VQ++    VD ET T   VEANI RCPDEE A++MI RID+IR+TG+S+GGVVEC+ARNVP+GLGSPVFDKLEAELAKACMSLPASKGFE+GSGF GTLL+GKTHNDEFYVDE G+TRTRTNRSGG+QGGISNGETI++RV FKPTSTIGQ Q TVTR GEETTMRGKGRHDPCVLPRA PMVEAM+ALVL D LM Q+AQC LFP    A E +  NPLGKK+ G
Sbjct:   50 RLFRISTWGESHGGGVGVNLDGCPPKIPLTAQDIQVELDRRKPGQSRITTPRNEDDQVEILSGLSPEGLTLGTPIAMLVRNKDQRSQDYDTMSMAYRPSHADATYDAKYGIRAVAGGGRSSARETIGRVAAAAVARKLLSLYSGCEVLGYVKAVQDVGTEDVDLETFTREQVEANIVRCPDEEAAERMIERIDKIRRTGDSIGGVVECVARNVPSGLGSPVFDKLEAELAKACMSLPASKGFEIGSGFAGTLLSGKTHNDEFYVDEEGQTRTRTNRSGGVQGGISNGETIVVRVAFKPTSTIGQLQNTVTRGGEETTMRGKGRHDPCVLPRAAPMVEAMVALVLADVLMQQKAQCELFP--ADALETLETNPLGKKLSG 426

The following BLAST results are available for this feature:

BLAST of NO01G05690.3 vs.

BLAST of NO01G05690.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CBN80098.1	4.800e-163	77.04	Chorismate Synthase [Ectocarpus siliculosus]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G05690	NO01G05690	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G05690.3	NO01G05690.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G05690.3.cds1	NO01G05690.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05690.3.cds2	NO01G05690.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05690.3.cds3	NO01G05690.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05690.3.cds4	NO01G05690.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05690.3.cds5	NO01G05690.3.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05690.3.cds6	NO01G05690.3.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05690.3.cds7	NO01G05690.3.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05690.3.cds8	NO01G05690.3.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05690.3.cds9	NO01G05690.3.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05690.3.cds10	NO01G05690.3.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:1587238..1591107-
coding sequence from alignment at chr1:1587238..1591107-

mRNA sequence

>NO01G05690.3 ID=NO01G05690.3|Name=NO01G05690.3|organism=Nannochloropsis oceanica|type=mRNA|length=1787bp
CAATAGGAGCAGCAGTAGGAGCAGCCATGGCCGCGACCACGACAATGATG
TCGACGGCCAAGAGGAGGGTGACCATGAGAAGAGGTCTTCCCGTCGTGGT
CGCCACTTCCGCCTCGGTCTGTTCCTTCCTCATGCTCTGCTTGCTCGGCA
CGGGTGACGCCTTTTCCATTCCCTTTTTGGCCTCCCCTTGGCAGGCAGGC
ACATCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAAGCCGCGTCAG
AAGAGGTGGCGTCCAGATGGGCATGGGCAACTCTTTCGGACGAGTAAGGG
AAAAAACAGAAAAAGAAAAGAGAAGACAAGAACGACGAGACGTAAAACAA
AAAAGGGATCCAGGCGAGAATGCTCAACCTCCTCCCTCCCTCCCTCCCTA
CCTCCTTTCCCCTCCTCCCCGTTCCCTTGCCGCAGCTCTTTCGCATCTCC
ACATTCGGCGAGTCCCATGGCGGGGGCGTGGGTGTGGTGGTGGACGGCTG
CCCCCCTCGCGTCGAGATCACCCGGGAAGAGATCCAGCAGGAGCTTGACC
GACGGAGGCCGGGCCAGTCGCGTCTCACCACCCCCCGGAACGAAGCCGAC
AGCGTCGAGATCCTCTCAGGGGTATCCGTCGACGGCCTCACCCTCGGCAC
GCCCATTGGCATGCTCGTCCGGAACCAGGACCACCGGTCGAATGACTACG
ACACCAATAGCGTGGCCTACCGCCCCTCCCACGCAGACGCCACCTACGAC
GCCAAGTACGGCCTGAGGGCCATAGCGGGAGGAGGCAGGAGCAGCGCCCG
GGAGACAATTGGCCGAGTGGCGGCCGCGGCGGTGGCGAAGAAGGTTCTAT
CCATGTGGAGCGGCATCGAGATCATGGGCTACGTCAAGAAGGTGCAAGAG
ATCGAGGCGACCGTGGACCCTGAGACCGTTACAATGGCGGCCGTTGAGGC
CAATATTGCCCGATGCCCCGATGAAGAAACGGCCCAGAAGATGATCGCTA
GGATCGACGAAATCCGCAAGACGGGAAATAGCGTAGGAGGCGTGGTGGAG
TGCATTGCCCGCAACGTGCCTGCCGGCCTGGGCTCTCCCGTCTTCGACAA
GCTCGAGGCCGAGCTCGCCAAGGCCTGCATGTCCCTTCCCGCCTCCAAAG
GCTTTGAGGTGGGCAGCGGCTTCGAGGGCACTCTCTTAACGGGCAAGACG
CACAACGACGAGTTCTATGTGGATGAGCACGGCCGCACCCGCACGCGGAC
GAATCGCTCGGGGGGCATCCAGGGCGGGATCTCCAACGGCGAGACGATTA
TCATCCGGGTATGCTTCAAGCCCACCTCCACCATTGGTCAGGAACAGGCC
ACGGTCACACGCGCCGGCGAGGAGACGACGATGCGCGGCAAGGGCCGGCA
CGATCCGTGCGTGCTGCCTCGGGCCGTGCCCATGGTGGAGGCTATGATGG
CGCTGGTCCTGGTGGACGCGCTTATGTCTCAGGAGGCGCAGTGTAATCTC
TTCCCCCGAGTCGAGGGGGCGGGGGAGGGCATGCACATTAATCCCCTCGG
GAAGAAGGTGGAGGGGCCTCGAGCCTGAGGGAGGAAGGGAGGGAGATTGA
ATGTATAAAGTACGGCAGAAGATCCAAGGGAAGGAGGGAGGGAGGGAGTC
CACTGAGAGGACGAAAGCGATAAAAGAAAGAAAAAGAGAAGAATAATGAA
TAGGTGAGGAAGAAGGAGGGAAAGAATCCAGAAACGAAGGGAAAGAAGAA
TGAGAAGAAGAAACAAAGACGTGATAGATGCCAGAAA

protein sequence of NO01G05690.3

>NO01G05690.3-protein ID=NO01G05690.3-protein|Name=NO01G05690.3|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MLNLLPPSLPTSFPLLPVPLPQLFRISTFGESHGGGVGVVVDGCPPRVEI
TREEIQQELDRRRPGQSRLTTPRNEADSVEILSGVSVDGLTLGTPIGMLV
RNQDHRSNDYDTNSVAYRPSHADATYDAKYGLRAIAGGGRSSARETIGRV
AAAAVAKKVLSMWSGIEIMGYVKKVQEIEATVDPETVTMAAVEANIARCP
DEETAQKMIARIDEIRKTGNSVGGVVECIARNVPAGLGSPVFDKLEAELA
KACMSLPASKGFEVGSGFEGTLLTGKTHNDEFYVDEHGRTRTRTNRSGGI
QGGISNGETIIIRVCFKPTSTIGQEQATVTRAGEETTMRGKGRHDPCVLP
RAVPMVEAMMALVLVDALMSQEAQCNLFPRVEGAGEGMHINPLGKKVEGP
RA*

mRNA from alignment at chr1:1587238..1591107-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G05690.3 ID=NO01G05690.3|Name=NO01G05690.3|organism=Nannochloropsis oceanica|type=mRNA|length=3870bp|location=Sequence derived from alignment at chr1:1587238..1591107- (Nannochloropsis oceanica)
CAATAGGAGCAGCAGTAGGAGCAGCCATGGCCGCGACCACGACAATGATG
TCGACGGCCAAGAGGAGGGTGACCATGAGGTGCGTAAGGTTGAGGAGGGA
GGGGGAGGGAGGCTGGGCGCTTTGCGATGCTGGAGGTGGAGGGGAAGGAG
AGCGGTTTCCTTCTCATCGCTTGGAATAAGATGTTACTGCTTGATTTCAG
ACAGAGTCGCACATGCCACCCTCCCCGCTTCCCCTGTCAGAAGAGGTCTT
CCCGTCGTGGTCGCCACTTCCGCCTCGGTCTGTTCCTTCCTCATGCTCTG
CTTGCTCGGCACGGGTGACGCCTTTTCCATTCCCTTTTTGGCCTCCCCTT
GGCAGGTACCGTCGTGCTTATGTGAGCAGGTGGGAGAAGACCCTCTCCTC
TCCTCTCTCCCTCACCTTTCTCCTGACCATCCTCCCTCACTTTCATTCGA
TTTTACCAGGCAGGCACATCAGCAGCAGCAGCAGCAGCAGCAACAGCAAC
AGCAAGCCGCGTCAGAAGAGGTGGCGTCCAGATGGGCATGGGCAACTCTT
TCGGACGAGTAAGGGAAAAAACAGAAAAAGAAAAGAGAAGACAAGAACGA
CGAGACGTAAAACAAAAAAGGGATCCAGGCGAGAATGCTCAACCTCCTCC
CTCCCTCCCTCCCTACCTCCTTTCCCCTCCTCCCCGTTCCCTTGCCGCAG
CTCTTTCGCATCTCCACATTCGGCGAGTCCCATGGCGGGGGCGTGGGTGT
GGTGGTGGACGGCTGCCCCCCTCGCGTCGAGATCACCCGGGAAGAGATCC
AGCAGGAGCTTGACCGACGGAGGTTAGTACACCCCCCCCCTCCTGCCCTC
CCTCCCCCCTCCCTTCCTCCTTTCCCCGTCCGGCGCTTCCTGTCTTTGAG
CGCCCTTATTCGTCTGTCGTGTTGCAACAACAAAAAGAGACCGACCGCCA
ACCCACTTCCCCACCCACCCTCCCTCCCGCCCTCCCTCCCTCCCTCCCTC
CCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGGCCGGGCCAGTC
GCGTCTCACCACCCCCCGGAACGAAGCCGACAGCGTCGAGATCCTCTCAG
GGGTATCCGTCGACGGCCTCACCCTCGGCACGCCCATTGGCATGCTCGTC
CGGAACCAGGACCACCGGTCGAATGTAGGGAGGGAGGGAGTGAGGGAGGG
GAGGGGGGAGAGGTTGGGAAGGAGCGGATGCTGGGCATGTCAGCCTCTTT
GTTCTGACTTCTTCACCTGTCCTTCCCTCCCTCCCCCCCTCCCCCCTCCC
TCCCTCCCTCCCTCCCTCCCCCCAGGACTACGACACCAATAGCGTGGCCT
ACCGCCCCTCCCACGCAGACGCCACCTACGACGCCAAGTACGGCCTGAGG
GCCATAGCGGGAGGAGGCAGGAGCAGCGCCCGGGAGACAATTGGTAGGGA
GGGAGGGAGGGAGGGAGGGGGGGAGGGAGGGAGGGAAGGCTTCGGTGGTG
GTGCTGCGCGGAGGGGGGGAGGGCGGTGTCGGGGAAATGACTTGCATGTA
TATTTCATTTCCTCCCTCTCTCCCTCCCTCATTTTTCTGTATCGGGCTGA
CTGGCAGCTAATTTTTCCTTGCTCTTTTCCCCTTCCCCCGCCCCTCGTCC
TTCTCCAGGCCGAGTGGCGGCCGCGGCGGTGGCGAAGAAGGTTCTATCCA
TGTGGAGCGGCATCGAGATCATGGGCTACGTCAAGAAGGTGAGGGAGGGA
GGGAGAGAGGGAGGGACGAAGGGTGGACGGGGCAGCATCCCCATCTGCTA
AAAAATGCTTACAGCTGGGGAGGGAGGGAGGAAATGAAATGGATATGCAA
GTTATTTCCCTTACCCTCCCCCCTTTTCTGTTACCTACCTACCTACCTAC
CTACCTACCTCCCTCCCTACCTCCCTCCCTCCCTCCCTCCCTCCCTCCTC
AGGTGCAAGAGATCGAGGCGACCGTGGACCCTGAGACCGTTACAATGGCG
GCCGTTGAGGCCAATATTGCCCGATGCCCCGATGAAGAAACGGCCCAGAA
GATGATCGCTAGGATCGACGAAATCCGCAAGACGGGAAATAGCGTAGGAG
GTAGGGAGGGGGGGGGGGGAGGGAGGGAGGGAGGGAGGGGGGCAAGGCGT
GGAATGCCAGCGGTGCCACAGCCCTGGTGGCGGTGGACACCCCGATCCGA
TCCGTTAAAGAGGGCGTTGCTTCGATGATGGGCAGAGGGTTCATTGGTGC
GATGATTGTGTCTGTGAGCGGGTGGGAGGTGGGGAAATATTATTATCTAT
ATAAAGCGTAGTAGGGATTGGTCGGCCACAACTCCCTCCCTCCCTCCCTC
CCTCCCACCCTCCCTTCCTCTCTGCCCCGCCGCCAGCCACTCCACCCCTT
GGGTATACACACCCATCCGCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTTCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCT
TCCTCCCTCCCTCCCTCAGGCGTGGTGGAGTGCATTGCCCGCAACGTGCC
TGCCGGCCTGGGCTCTCCCGTCTTCGACAAGCTCGAGGCCGAGCTCGCCA
AGGCCTGCATGTCCCTTCCCGCCTCCAAAGGTAAGCATGCCCGCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCGTCTTCCGACTGCATG
CATACCGCCCCTCCCTCCCTCCCTCCACGCTCACCGCCCTCCCTCCCTCC
CCACCCCCTCCCTCCCTTCCCAGGCTTTGAGGTGGGCAGCGGCTTCGAGG
GCACTCTCTTAACGGGCAAGACGCACAACGACGAGTTCTATGTGGATGAG
CACGGTAGGGAGGGAGGGAGGGTAGGAAGGGGGGAAGGAGGGGGGGAGGG
AGGAAGGGAATGGAGATCGTAAAAAATTGAGACTTCGCAGCTTATTCTTT
CTTCCGCCCGCCCGTCCTCCCTCCCTCCCTCCCTTAGGCCGCACCCGCAC
GCGGACGAATCGCTCGGGGGGCATCCAGGGCGGGATCTCCAACGGCGAGA
CGATTATCATCCGGGTATGCTTCAAGCCCACCTCCACCATTGGTCAGGAA
CAGGCCACGGTCACACGCGCCGGCGAGGTAGGTGTAGTTGCCCCCCCTCC
CTCCCTCCCCCCTCCCTCTCTCTCCCCCTCCCTCCCTCATCGTTGCTCTC
TTTCGTCAACGGCCTCCATCCTTCTCCTCTCTCGGTCTCTCACCCTTTTC
GTCGACCTTCCTCCCTCCCTCCCTCTCCCCCTCCTGTGGCGTGCAGGAGA
CGACGATGCGCGGCAAGGGCCGGCACGATCCGTGCGTGCTGCCTCGGGCC
GTGCCCATGGTGGAGGCTATGAGTACGTGGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAATGTCCTAACCGTTTCAAATCGAGAACGAAATCGG
CATGACGTACCGCGCCTCAACCTCTGCCTCCCCTCCTCCCTCTCTCCTCG
CCTCCCTTCCTCCTCTGTCTGTATACACAGTGGCGCTGGTCCTGGTGGAC
GCGCTTATGTCTCAGGAGGCGCAGTGTAATCTCTTCCCCCGAGTCGAGGG
GGCGGGGGAGGGCATGCACATTAATCCCCTCGGGAAGAAGGTGGAGGGGC
CTCGAGCCTGAGGGAGGAAGGGAGGGAGATTGAATGTATAAAGTACGGCA
GAAGATCCAAGGGAAGGAGGGAGGGAGGGAGTCCACTGAGAGGACGAAAG
CGATAAAAGAAAGAAAAAGAGAAGAATAATGAATAGGTGAGGAAGAAGGA
GGGAAAGAATCCAGAAACGAAGGGAAAGAAGAATGAGAAGAAGAAACAAA
GACGTGATAGATGCCAGAAA

Coding sequence (CDS) from alignment at chr1:1587238..1591107-

>NO01G05690.3 ID=NO01G05690.3|Name=NO01G05690.3|organism=Nannochloropsis oceanica|type=CDS|length=1209bp|location=Sequence derived from alignment at chr1:1587238..1591107- (Nannochloropsis oceanica)
ATGCTCAACCTCCTCCCTCCCTCCCTCCCTACCTCCTTTCCCCTCCTCCC
CGTTCCCTTGCCGCAGCTCTTTCGCATCTCCACATTCGGCGAGTCCCATG
GCGGGGGCGTGGGTGTGGTGGTGGACGGCTGCCCCCCTCGCGTCGAGATC
ACCCGGGAAGAGATCCAGCAGGAGCTTGACCGACGGAGGCCGGGCCAGTC
GCGTCTCACCACCCCCCGGAACGAAGCCGACAGCGTCGAGATCCTCTCAG
GGGTATCCGTCGACGGCCTCACCCTCGGCACGCCCATTGGCATGCTCGTC
CGGAACCAGGACCACCGGTCGAATGACTACGACACCAATAGCGTGGCCTA
CCGCCCCTCCCACGCAGACGCCACCTACGACGCCAAGTACGGCCTGAGGG
CCATAGCGGGAGGAGGCAGGAGCAGCGCCCGGGAGACAATTGGCCGAGTG
GCGGCCGCGGCGGTGGCGAAGAAGGTTCTATCCATGTGGAGCGGCATCGA
GATCATGGGCTACGTCAAGAAGGTGCAAGAGATCGAGGCGACCGTGGACC
CTGAGACCGTTACAATGGCGGCCGTTGAGGCCAATATTGCCCGATGCCCC
GATGAAGAAACGGCCCAGAAGATGATCGCTAGGATCGACGAAATCCGCAA
GACGGGAAATAGCGTAGGAGGCGTGGTGGAGTGCATTGCCCGCAACGTGC
CTGCCGGCCTGGGCTCTCCCGTCTTCGACAAGCTCGAGGCCGAGCTCGCC
AAGGCCTGCATGTCCCTTCCCGCCTCCAAAGGCTTTGAGGTGGGCAGCGG
CTTCGAGGGCACTCTCTTAACGGGCAAGACGCACAACGACGAGTTCTATG
TGGATGAGCACGGCCGCACCCGCACGCGGACGAATCGCTCGGGGGGCATC
CAGGGCGGGATCTCCAACGGCGAGACGATTATCATCCGGGTATGCTTCAA
GCCCACCTCCACCATTGGTCAGGAACAGGCCACGGTCACACGCGCCGGCG
AGGAGACGACGATGCGCGGCAAGGGCCGGCACGATCCGTGCGTGCTGCCT
CGGGCCGTGCCCATGGTGGAGGCTATGATGGCGCTGGTCCTGGTGGACGC
GCTTATGTCTCAGGAGGCGCAGTGTAATCTCTTCCCCCGAGTCGAGGGGG
CGGGGGAGGGCATGCACATTAATCCCCTCGGGAAGAAGGTGGAGGGGCCT
CGAGCCTGA

Synonyms

Publications