NO01G05460.1, NO01G05460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05460.1
Unique NameNO01G05460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1488
Alignment locationchr1:1499033..1502055 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1499033..1502055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05460.1 vs.
Match: EWM22764.1 (chromatin associated protein kti12 [Nannochloropsis gaditana])

HSP 1 Score: 193.0 bits (489), Expect = 1.500e-45
Identity = 103/170 (60.59%), Postives = 122/170 (71.76%), Query Frame = 0 
Query:  109 MARAETTQHCVVWIEASDKAVAQAWNEGREDGYPPELFNDLCCRFEAPNESNRWDRPLIRFIPPSPPSSSSHRSPPPAGVGEGGSKEDKEGERWVL--AYRQVLQALTEGKAPAAGLSTAMAPRNEADALYLLDQATQRLLATLLDRQKTSLPGDSLTLPQANLPVRLAR 277
            MARAETTQHCVVW+    + VA+AWNE RED YPPELF+DL  RFEAP E NRWDRPLI +  P PPS  +               E+KEG R      Y+QVL A+TEGKAPAAGLSTA APRN+ADAL+LLDQ TQRLL+++L+RQKTS+PGD +T+P+A  PV   R
Sbjct:    1 MARAETTQHCVVWVALEHQHVARAWNESREDRYPPELFDDLWGRFEAPVEGNRWDRPLICY-SPRPPSEGA---------------EEKEGRRSTRDEVYQQVLAAITEGKAPAAGLSTATAPRNDADALFLLDQVTQRLLSSILERQKTSMPGDIITVPEARTPVCFRR 154
The following BLAST results are available for this feature:
BLAST of NO01G05460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22764.11.500e-4560.59chromatin associated protein kti12 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05460NO01G05460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05460.1NO01G05460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05460.1.cds1NO01G05460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05460.1.cds2NO01G05460.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05460.1.cds3NO01G05460.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05460.1.cds4NO01G05460.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05460.1.cds5NO01G05460.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05460.1.cds6NO01G05460.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05460.1 ID=NO01G05460.1|Name=NO01G05460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1488bp
CTTTGGAAAAGGCAGTGGCATGGGCCAAGCGGGGTGCGACAGCCAAATGC
AAAGTGTTGTTGTGCGCTGCGGAGGCTCAGTAGGCACTGCCGTTCCTATT
GGGACGATGCTTGGTGAATATGTGGATCATTTTTAAGATAGTCTGTTGGT
AAGTGCATTTATTTGGACACTGTTTTATTCCGCGAGAAGATAAGAGCTGG
GGAGGTCAGAGAGGAATCGATGGCGGGGCAGGACTTGGGGGCAGGACCCC
CCCCGTCGGACGCGACGGCCATGAGCGAGCCTCTAAAATACCCTTTGCAT
GACTATTACCTCCTATTTACTTACTCTTGGAAGACCACCTTTCCTTTCCA
ACATACTCTAAGCAATTGGAAAAGTCACCCGCCCAGCTCCTTCTCTTCGC
CCCATCGTCGTCATTTTCCCGTAGCCTCCCCCTTGTGCCACCGCGCAGAC
GATGCCCCTCGTCACACTCTGTGGGCTACCGGCCGCGGGCAAGACGACCT
TCGCTGAGGGACTTGTTGCTTTCTTGGAAAAGGAGCTACCCGGACAGCAA
GGACGAGCGAGGGAAGAGGAGGGAGGAGGGGGAGGGGCCATGGTTGTACT
CATTAATGAGGAGGCGCTGCACATCCAGAAAAAGGAGGGTTATAAAGACG
CCACGTCGGAGAAAGTGACGCGCGGTGGCCTGAAAAGCAGGGTAGACCAT
GCATTGAACCGAGAAACTGTGGTGGTGTTGGACAGTATGAATTATATCAA
GGGCTTCCGGTACCAGCTCTATTGCATGGCACGGGCGGAGACGACGCAGC
ATTGTGTCGTATGGATTGAGGCATCGGACAAGGCAGTGGCTCAAGCGTGG
AATGAGGGCCGGGAAGATGGTTACCCGCCGGAGCTGTTTAATGATCTTTG
TTGTCGTTTCGAGGCACCCAATGAAAGCAACCGCTGGGACCGCCCCCTTA
TCCGCTTCATCCCTCCCTCCCCCCCTTCCTCGTCCTCCCATCGCTCCCCC
CCTCCCGCGGGGGTAGGAGAAGGCGGAAGCAAGGAGGATAAAGAGGGGGA
GAGGTGGGTGTTGGCCTACAGACAGGTGCTACAGGCGCTGACGGAGGGCA
AGGCACCCGCCGCGGGCCTCTCTACTGCAATGGCTCCACGAAACGAAGCG
GACGCCCTCTACCTTCTCGACCAAGCCACCCAGCGTCTCCTCGCCACCCT
CCTGGACCGACAGAAGACATCGCTGCCGGGCGACTCGCTCACACTCCCCC
AAGCCAACCTTCCCGTGCGTTTGGCAAGACACGTCAGCCTCCCGGAGCTG
AAGCGCCTCCGACGGCAATTCGTGAAGCAAGCCGCAGAATGGGCCGCTGC
GACCCTTGGGGCGGACGAAGGCGGGGAGGGCGGGGAGGAGGGAGGAGGGA
AGGGGGGGAGGAGAGAGATGCGTGTGGGGGATGCCTTTGTGGAGTACATC
AACATGCATACCAGCTAGGGGAGGGAGGGAGGGAGGGA
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protein sequence of NO01G05460.1

>NO01G05460.1-protein ID=NO01G05460.1-protein|Name=NO01G05460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MPLVTLCGLPAAGKTTFAEGLVAFLEKELPGQQGRAREEEGGGGGAMVVL
INEEALHIQKKEGYKDATSEKVTRGGLKSRVDHALNRETVVVLDSMNYIK
GFRYQLYCMARAETTQHCVVWIEASDKAVAQAWNEGREDGYPPELFNDLC
CRFEAPNESNRWDRPLIRFIPPSPPSSSSHRSPPPAGVGEGGSKEDKEGE
RWVLAYRQVLQALTEGKAPAAGLSTAMAPRNEADALYLLDQATQRLLATL
LDRQKTSLPGDSLTLPQANLPVRLARHVSLPELKRLRRQFVKQAAEWAAA
TLGADEGGEGGEEGGGKGGRREMRVGDAFVEYINMHTS*
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mRNA from alignment at chr1:1499033..1502055+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05460.1 ID=NO01G05460.1|Name=NO01G05460.1|organism=Nannochloropsis oceanica|type=mRNA|length=3023bp|location=Sequence derived from alignment at chr1:1499033..1502055+ (Nannochloropsis oceanica)
CTTTGGAAAAGGCAGTGGCATGGGCCAAGCGGGGTGCGACAGCCAAATGC
AAAGTGTTGTTGTGCGCTGCGGAGGCTCAGTAGGCACTGCCGTTCCTATT
GGGACGATGCTTGGTGAATATGTGGATCATTTTTAAGATAGTCTGTTGGT
AAGTGCATTTATTTGGACACTGTTTTATTCCGCGAGAAGATAAGAGCTGG
GGAGGTCAGAGAGGAATCGATGGCGGGGCAGGACTTGGGGGCAGGACCCC
CCCCGTCGGACGCGACGGCCATGAGCGAGCCTCTAAAATACCCTTTGCAT
GACTATTACCTCCTATTTACTTACTCTTGGAAGACCACCTTTCCTTTCCA
ACATACTCTAAGCAATTGGAAAAGTCACCCGCCCAGCTCCTTCTCTTCGC
CCCATCGTCGTCATTTTCCCGTAGCCTCCCCCTTGTGCCACCGCGCAGAC
GATGCCCCTCGTCACACTCTGTGGGCTACCGGCCGCGGGCAAGACGACCT
TCGCTGAGGGACTTGTTGCTTTCTTGGAAAAGGAGCTACCCGGACAGCAA
GGACGAGCGAGGGAAGAGGAGGGAGGAGGGGGAGGGGCCATGGTTGTACT
CATTAATGAGGAGGCGCTGCACATCCAGAAAAAGGAGGGTTATAAAGGTG
AGAGAGGAAGCAACTGCGAAGCGGAGAGGGAAAGCGTCGCGTACATTTGG
GACGAGGATGACACAAGTCCGGTAGATTCTCAATCGACACCTCCCCCATC
CCTTTCGCTTCCTCACCATCCTTGTAGACGCCACGTCGGAGAAAGTGACG
CGCGGTGGCCTGAAAAGCAGGGTAGACCATGCATTGAACCGAGAAACTGT
GGTGGTGTTGGACAGTATGAATTATATCAAGGGCTTCCGGTACCAGCTCT
ATTGCATGGCACGGGCGGAGACGACGCAGCATTGTGTCGTGCGTAGGGAG
GAAGGGAGAGAAGGGAGATTGGTTTGGAAGCGATATTGTATATACAGACA
GGACGAGGACAGATGCGCGGAGACGTGAGACTTTGAAGCGCATGAAGACA
AAGAAGACCCCTTCTCATCTTTCCCCTCTCTCTCTCCCTCCCTCCCCCCT
CCCGATCCTCCTCCCCCCTTCTCCTCCTTCCTCCTCCATCTATATTTGTA
GGTATGGATTGAGGCATCGGACAAGGCAGTGGCTCAAGCGTGGAATGAGG
GCCGGGAAGATGGTTACCCGCCGGAGCTGTGAGTCTTTCAGGAGAAAGAA
AGAGGGAGGGATTGAGGAAGGGACGGACTGAAGAAAGGAGGAGGGGGTGG
AGACAAGCAGACAACCAGCAATTTTCGTTCAGATCCTTCATTGTTTCGTT
TCCTTACACTCCTCCCTCCCTCCCTTCCTCTCTCCCTCCCTTCCTCCCTA
GGTTTAATGATCTTTGTTGTCGTTTCGAGGCACCCAATGAAAGCAACCGC
TGGGACCGCCCCCTTATCCGCTTCATCCCTCCCTCCCCCCCTTCCTCGTC
CTCCCATCGCTCCCCCCCTCCCGCGGGGGTAGGAGAAGGCGGAAGCAAGG
AGGATAAAGAGGGGGAGAGGTGGGTGTTGGCCTACAGACAGGTGCTACAG
GCGCTGACGGAGGGCAAGGCACCCGCCGCGGGCCTCTCTACTGCAATGGT
AAGGAGGGAAGGAGGGAAGGAAGGAAGGAAGTAGTGCATGGCCATGGCAG
AGGGCCTTTACACAGCACTGGAAAGAGAGGGATGAAGGGAGCAAGGGAAG
GAGGGAGGAAGGGAATGAGATGGATATTCCCGTGTGTGCGTTAGGTGAGC
GTAAGGCAAGCGAGAGGGAGAGAGGAAGGGGGGAAGAAGGTGATGGCGCG
AACAACCCCGACAGTGTTTCTGTCCCTAGTGCATGCTTAGCTTTCCCCTT
GCCCTGCTTCCGCGAGGAAGGAGGGGGGGGAGGGCGGCATGTGTCGATGA
CGTGGATAGTTGTCAAACTCGGGGAAGAGCAATCGAACGACCCTCGTGCC
CTCCCTCCCTCTTCCCCTTTTCGGTGGGGCGACGGGAGGGACGGACCCGG
GTAGCCTTTTCCTCCTCGTTTTTGCTATTGTTGTTGTTGTAGTAGTAAAT
AATAACAATGATAGGAATGATGAGGGGAAAGGCTGGTGGGACCGCCATAG
GAAAAGGGCGACATACCGTGCTGCGTAGGAATACCTTTCTTACAAAATCC
CTCCCTCTCTCCCTCCGTCGGTCCGTCCGTCCGTCCGTCCCTCCTTCCCT
CTGTTCCCCCTTGCCTCAGGTATTAATATCCTCTTCTCTAATCCAATCCA
GGCATCGTCTCCTCCTCGCCTCCTCACAATCAATATCCCTCCCCCTTTCC
TCTCCCTCCCATCCTTCCATCCTCCCTCCCTTCCTCCCTCCCTCTCTCCC
CCCAGGCTCCACGAAACGAAGCGGACGCCCTCTACCTTCTCGACCAAGCC
ACCCAGCGTCTCCTCGCCACCCTCCTGGACCGACAGAAGACATCGCTGCC
GGGCGACTCGCTCACACTCCCCCAAGCCAACCTTCCCGTGCGTTTGGCAA
GGTGAGTCCTTCCTCCCTCCTTTCCTCCCTCGTTCCCTCGTCCCCCTTCT
GTCACCTCCCTTTAGTCTTGCCCTCTACGGGTCGCTATCGTAGAGATAGC
GACTCGTCCTCCTTGCGGCCCTCCCTCTCTGTCTCCCTCAGACACGTCAG
CCTTCCCGAGCTGAAGCAACTTTGACTTTATCTCACTTTCCCTCCCTCCT
TCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTTCCTCCTCC
TCCCCTTTCACAGACACGTCAGCCTCCCGGAGCTGAAGCGCCTCCGACGG
CAATTCGTGAAGCAAGCCGCAGAATGGGCCGCTGCGACCCTTGGGGCGGA
CGAAGGCGGGGAGGGCGGGGAGGAGGGAGGAGGGAAGGGGGGGAGGAGAG
AGATGCGTGTGGGGGATGCCTTTGTGGAGTACATCAACATGCATACCAGC
TAGGGGAGGGAGGGAGGGAGGGA
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Coding sequence (CDS) from alignment at chr1:1499033..1502055+

>NO01G05460.1 ID=NO01G05460.1|Name=NO01G05460.1|organism=Nannochloropsis oceanica|type=CDS|length=1017bp|location=Sequence derived from alignment at chr1:1499033..1502055+ (Nannochloropsis oceanica)
ATGCCCCTCGTCACACTCTGTGGGCTACCGGCCGCGGGCAAGACGACCTT
CGCTGAGGGACTTGTTGCTTTCTTGGAAAAGGAGCTACCCGGACAGCAAG
GACGAGCGAGGGAAGAGGAGGGAGGAGGGGGAGGGGCCATGGTTGTACTC
ATTAATGAGGAGGCGCTGCACATCCAGAAAAAGGAGGGTTATAAAGACGC
CACGTCGGAGAAAGTGACGCGCGGTGGCCTGAAAAGCAGGGTAGACCATG
CATTGAACCGAGAAACTGTGGTGGTGTTGGACAGTATGAATTATATCAAG
GGCTTCCGGTACCAGCTCTATTGCATGGCACGGGCGGAGACGACGCAGCA
TTGTGTCGTATGGATTGAGGCATCGGACAAGGCAGTGGCTCAAGCGTGGA
ATGAGGGCCGGGAAGATGGTTACCCGCCGGAGCTGTTTAATGATCTTTGT
TGTCGTTTCGAGGCACCCAATGAAAGCAACCGCTGGGACCGCCCCCTTAT
CCGCTTCATCCCTCCCTCCCCCCCTTCCTCGTCCTCCCATCGCTCCCCCC
CTCCCGCGGGGGTAGGAGAAGGCGGAAGCAAGGAGGATAAAGAGGGGGAG
AGGTGGGTGTTGGCCTACAGACAGGTGCTACAGGCGCTGACGGAGGGCAA
GGCACCCGCCGCGGGCCTCTCTACTGCAATGGCTCCACGAAACGAAGCGG
ACGCCCTCTACCTTCTCGACCAAGCCACCCAGCGTCTCCTCGCCACCCTC
CTGGACCGACAGAAGACATCGCTGCCGGGCGACTCGCTCACACTCCCCCA
AGCCAACCTTCCCGTGCGTTTGGCAAGACACGTCAGCCTCCCGGAGCTGA
AGCGCCTCCGACGGCAATTCGTGAAGCAAGCCGCAGAATGGGCCGCTGCG
ACCCTTGGGGCGGACGAAGGCGGGGAGGGCGGGGAGGAGGGAGGAGGGAA
GGGGGGGAGGAGAGAGATGCGTGTGGGGGATGCCTTTGTGGAGTACATCA
ACATGCATACCAGCTAG
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Synonyms
Publications