NO01G05430.1, NO01G05430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05430.1
Unique NameNO01G05430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1555
Alignment locationchr1:1486098..1487652 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1486098..1487652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05430.1 vs.
Match: XP_005855033.1 (hypothetical protein NGA_0415500 [Nannochloropsis gaditana CCMP526]; EKU21331.1 hypothetical protein NGA_0415500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 104.4 bits (259), Expect = 4.000e-19
Identity = 71/188 (37.77%), Postives = 107/188 (56.91%), Query Frame = 0 
Query:    1 MRRNLSLLALGITLTFTAAQPTLTLTSIKAVESTRDNKDQWNIKGYFNDPQGDFISSIAVDGVSAILAEGRNEIVSDVTFDAADCRELNNDRGVFCKDTGARISLTRTKRVPKEAMDVAKHSKNKTSSASSYYKVSGVFRRQQF-QNSISMSGSLTATIGNRGGSDEAMLSNCNEK-RGA-RTTKLLC 186
            MRR   LLALGITL  TA Q   TL ++K ++ ++  +DQW++KG  +DP    +  I  +G++  L +     +    F A+DC+   N RGV CK  GAR+S+  ++R PK A +V   + N T     YY  SG+FRR QF Q+ I    ++   + +      AM+S+C+EK +GA RTT++ C
Sbjct:    1 MRRAFFLLALGITLVMTAGQDLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRR-PKGA-NVQNSNYNST---GGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRITC 183
The following BLAST results are available for this feature:
BLAST of NO01G05430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
200400600800100012001400SequenceXP_005855033.1
Match NameE-valueIdentityDescription
XP_005855033.14.000e-1937.77hypothetical protein NGA_0415500 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05430NO01G05430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05430.1NO01G05430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05430.1.cds1NO01G05430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05430.1 ID=NO01G05430.1|Name=NO01G05430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1555bp
CAAACAGCACCATAGACCCTTCCGATTTGCCGACAGAACAGCTTGTTGGG
TGGGCAAACTACATTCTCCTTTCCCTTCTGCCCTTTCCCCTTCCCTTTCC
CTCTTCTTCTTCCGATTTTCTCCACTTCTTCTCACCAACTCCTCGCCATT
CAAGTATATCTGCCACGATGGGGTTGTCTCACTCCATTGATCTGTGTCCT
GCGTACGTCGGAGTCCTGAGGAGTGGAGATCATGTGTACCAAACGACTGA
ACCTCATTCCAAATGCAATGCTCTTATATAAGCAAGCATCTCGTTCTCTT
TTCTTCCGTCTCTTCTCATCCTTCTCATTGTCCTTCCCTCTTCCTGTCTC
CTAGGGTGGGCAAGTCGTATGCTGCGCCTCCCGCTTGCCCCTACGTGCAC
CCAGATTCACATATTTGCACAAGGCGCCTCACGCACAAAAGGATGACACC
AATTATTTTGTACCTGTCACCCCTTCTCCTCATCTCCGCTTGGCCGCAGA
TTGATCTCACGCCGTAGATACTGCATGCTTTTGCCACCCTCCACCAAAGC
ACTCATCTTCCTCACATCTACACCTCGCACCATTACAGCAAACAAGCTTT
CCCCGTGAAAAACTATGCGTCGTAATCTGTCTTTGCTTGCCCTCGGTATC
ACCCTTACCTTCACGGCGGCCCAGCCGACGCTGACCCTCACCTCAATCAA
GGCAGTCGAGTCGACCAGGGACAACAAAGACCAATGGAATATCAAGGGCT
ACTTCAACGATCCTCAGGGAGATTTCATCTCGTCCATTGCTGTCGACGGA
GTATCCGCAATTCTTGCTGAAGGACGCAATGAAATTGTGAGCGATGTGAC
TTTTGACGCGGCTGATTGCAGAGAGCTCAACAACGACAGGGGAGTCTTTT
GCAAGGATACGGGCGCCCGTATCTCGCTCACGAGGACTAAGAGGGTACCC
AAGGAGGCCATGGATGTCGCAAAGCACAGCAAGAATAAGACCAGCAGCGC
TTCCTCCTACTACAAAGTGTCAGGTGTCTTTCGCCGTCAGCAATTCCAGA
ACTCTATCTCTATGTCGGGGAGTCTGACAGCTACTATTGGCAACAGGGGG
GGTAGCGACGAGGCCATGCTCTCTAACTGCAACGAGAAGAGGGGAGCCAG
GACCACCAAGCTTCTTTGCAAGTAAATGCAGTCATACGGTACTTGGGCAT
CCATCAGGTATCTCACTCTGGCCAGGAACGCTCTACGTCCTGTCTCATAT
ATGTTTATCTGTGACTGCGTCCTGTGTTCACGCTTCCAGTCTGGAAACCA
AGCTTCCATTCCAACCGCGTCGGCCTGTCCATGTGCGTAAGAATGTTTTT
TGTCTCTTGTGTTGTGTATGCGATGTGCTGTGTATGTGTCCATTTCCTTG
TTTAGCACTGCTTGTATGGTGTGCTTACATTCCCTGGATCGCCCGAGAAG
AGTCAGTCCCGGAGTTTAAGCTTCGGAGACTCGGTTCTTTCAATCTTAAT
AATTCCCTTACCAAGAAAGAAGAATCAATTGAGTCAGCAAGACCCAAAAG
AATGC
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protein sequence of NO01G05430.1

>NO01G05430.1-protein ID=NO01G05430.1-protein|Name=NO01G05430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MRRNLSLLALGITLTFTAAQPTLTLTSIKAVESTRDNKDQWNIKGYFNDP
QGDFISSIAVDGVSAILAEGRNEIVSDVTFDAADCRELNNDRGVFCKDTG
ARISLTRTKRVPKEAMDVAKHSKNKTSSASSYYKVSGVFRRQQFQNSISM
SGSLTATIGNRGGSDEAMLSNCNEKRGARTTKLLCK*
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mRNA from alignment at chr1:1486098..1487652-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05430.1 ID=NO01G05430.1|Name=NO01G05430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1555bp|location=Sequence derived from alignment at chr1:1486098..1487652- (Nannochloropsis oceanica)
CAAACAGCACCATAGACCCTTCCGATTTGCCGACAGAACAGCTTGTTGGG
TGGGCAAACTACATTCTCCTTTCCCTTCTGCCCTTTCCCCTTCCCTTTCC
CTCTTCTTCTTCCGATTTTCTCCACTTCTTCTCACCAACTCCTCGCCATT
CAAGTATATCTGCCACGATGGGGTTGTCTCACTCCATTGATCTGTGTCCT
GCGTACGTCGGAGTCCTGAGGAGTGGAGATCATGTGTACCAAACGACTGA
ACCTCATTCCAAATGCAATGCTCTTATATAAGCAAGCATCTCGTTCTCTT
TTCTTCCGTCTCTTCTCATCCTTCTCATTGTCCTTCCCTCTTCCTGTCTC
CTAGGGTGGGCAAGTCGTATGCTGCGCCTCCCGCTTGCCCCTACGTGCAC
CCAGATTCACATATTTGCACAAGGCGCCTCACGCACAAAAGGATGACACC
AATTATTTTGTACCTGTCACCCCTTCTCCTCATCTCCGCTTGGCCGCAGA
TTGATCTCACGCCGTAGATACTGCATGCTTTTGCCACCCTCCACCAAAGC
ACTCATCTTCCTCACATCTACACCTCGCACCATTACAGCAAACAAGCTTT
CCCCGTGAAAAACTATGCGTCGTAATCTGTCTTTGCTTGCCCTCGGTATC
ACCCTTACCTTCACGGCGGCCCAGCCGACGCTGACCCTCACCTCAATCAA
GGCAGTCGAGTCGACCAGGGACAACAAAGACCAATGGAATATCAAGGGCT
ACTTCAACGATCCTCAGGGAGATTTCATCTCGTCCATTGCTGTCGACGGA
GTATCCGCAATTCTTGCTGAAGGACGCAATGAAATTGTGAGCGATGTGAC
TTTTGACGCGGCTGATTGCAGAGAGCTCAACAACGACAGGGGAGTCTTTT
GCAAGGATACGGGCGCCCGTATCTCGCTCACGAGGACTAAGAGGGTACCC
AAGGAGGCCATGGATGTCGCAAAGCACAGCAAGAATAAGACCAGCAGCGC
TTCCTCCTACTACAAAGTGTCAGGTGTCTTTCGCCGTCAGCAATTCCAGA
ACTCTATCTCTATGTCGGGGAGTCTGACAGCTACTATTGGCAACAGGGGG
GGTAGCGACGAGGCCATGCTCTCTAACTGCAACGAGAAGAGGGGAGCCAG
GACCACCAAGCTTCTTTGCAAGTAAATGCAGTCATACGGTACTTGGGCAT
CCATCAGGTATCTCACTCTGGCCAGGAACGCTCTACGTCCTGTCTCATAT
ATGTTTATCTGTGACTGCGTCCTGTGTTCACGCTTCCAGTCTGGAAACCA
AGCTTCCATTCCAACCGCGTCGGCCTGTCCATGTGCGTAAGAATGTTTTT
TGTCTCTTGTGTTGTGTATGCGATGTGCTGTGTATGTGTCCATTTCCTTG
TTTAGCACTGCTTGTATGGTGTGCTTACATTCCCTGGATCGCCCGAGAAG
AGTCAGTCCCGGAGTTTAAGCTTCGGAGACTCGGTTCTTTCAATCTTAAT
AATTCCCTTACCAAGAAAGAAGAATCAATTGAGTCAGCAAGACCCAAAAG
AATGC
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Coding sequence (CDS) from alignment at chr1:1486098..1487652-

>NO01G05430.1 ID=NO01G05430.1|Name=NO01G05430.1|organism=Nannochloropsis oceanica|type=CDS|length=561bp|location=Sequence derived from alignment at chr1:1486098..1487652- (Nannochloropsis oceanica)
ATGCGTCGTAATCTGTCTTTGCTTGCCCTCGGTATCACCCTTACCTTCAC
GGCGGCCCAGCCGACGCTGACCCTCACCTCAATCAAGGCAGTCGAGTCGA
CCAGGGACAACAAAGACCAATGGAATATCAAGGGCTACTTCAACGATCCT
CAGGGAGATTTCATCTCGTCCATTGCTGTCGACGGAGTATCCGCAATTCT
TGCTGAAGGACGCAATGAAATTGTGAGCGATGTGACTTTTGACGCGGCTG
ATTGCAGAGAGCTCAACAACGACAGGGGAGTCTTTTGCAAGGATACGGGC
GCCCGTATCTCGCTCACGAGGACTAAGAGGGTACCCAAGGAGGCCATGGA
TGTCGCAAAGCACAGCAAGAATAAGACCAGCAGCGCTTCCTCCTACTACA
AAGTGTCAGGTGTCTTTCGCCGTCAGCAATTCCAGAACTCTATCTCTATG
TCGGGGAGTCTGACAGCTACTATTGGCAACAGGGGGGGTAGCGACGAGGC
CATGCTCTCTAACTGCAACGAGAAGAGGGGAGCCAGGACCACCAAGCTTC
TTTGCAAGTAA
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Synonyms
Publications