NO01G05360.1, NO01G05360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05360.1
Unique NameNO01G05360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1348
Alignment locationchr1:1434356..1435703 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1434356..1435703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO01G05360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05360NO01G05360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05360.1NO01G05360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05360.1.cds1NO01G05360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05360.1 ID=NO01G05360.1|Name=NO01G05360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1348bp
GGTACTTTGTTTTTGGTTTTTATTGTCATTTCCTTCTCAATTAATGTATT
TTTTCGTATTTTTTTGGTATATTTTTTACGATATTTCTACCTCAGTTTGG
ACACCATTTTATCAAGTGGAAAAATTATGACTTGATCATTAGTGGGGAGA
CGCCAGGGAATATGGAGCTTCACAAATATCTGCGATCATCATTGGACTTG
GCGTGCGCTTCAATAAATCCACTTCCCCAATTATATCCTCATCTATCTCC
TGCACTACATTCTGCTTCCTTTTCCCTTCCCGTACCAACATTGCATCGAT
AGGGAAAGTGGGGATTTTTCCGTATTTTCTACGAACTTGTCTTTCGGATC
TCCACCTTGTCTCAGGTACATTCTTATTAATGTACATCGCCGCATCTTTC
CTGAATCCGTCTGTAGCTCTTTTACTTGGCCATACGATCACGGGCCGGGC
AGTTACATACTCAAGCAAAAGTCTGACCTGTATAGGGAAAGAAGACGATA
GAGAAAGAAAAGATAAGTCTGAGATAGAATTAAATAATTATTAAAATTAA
TAATACCTTTCCTGGAGTCCACCGATAGCTGCTGGTTTGGCTGCATTGGT
CCTTCATGTTTTAATCCCTGTACAAGTGGGTGATAATCACTTGAGTTCAC
GGTGCTCACAATGCACACACATCGGACATTGGATAGACTCTGCAAAAATG
GGCTGCACGTTACGATAATGGGCGGCTGGGCTGCACGTTACGATAGTCGT
CGATCGTCATGTTCATTTAAGTCATAGTCGTAGCCATCTTAGTCATATAC
ACGATGATTCCAACCGAAAATGACGTTGACAAATAATAGTGCGCATGTTT
TGCATTAAGACTACGACTACGTCATTTTGTTGCATAGGGAGGAGGAGGGG
AGGAGGGGAGGAGGGGAGGAGGGGAGGAGGAGGGGGGAGGAGGGGAGGAG
AGGAGAGGAGAGGAGAGGAGGGGAGGAGGGGAGGAGGAGGGGAGGAGGGG
AGGAGGAGGGAAGGAGGGGAAGAGGAGGGGAGGAGGAGGGGAGGAGGGGA
GGAGGGGAGGAGGGGAAGAGGGGAAGAGGAGGGGAGGAGGGGAGGAGGGG
AGCAGGGGAGGAGGAGGGGAGGAGGGGAGGAGGGGAGGAGCAGGGGAGGA
GCAGGGGGAGGAGCAGGAGAGGAGCAAGGGAGGAGCAGGGGAGGAGGGGA
GGAGCAGGGGGAGGAGCAGGGGAGGAGGAGGGGAGGAGCAGGGGGAGGAG
CAGGGGGAGGAGCAGGGGAGGAGGGGAGGAGGGCAGGCTTCCGACAATCT
CGGTCGTTGCAGACCGGCATAAAGACATCTCCTTCTATCATATTTTGA
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protein sequence of NO01G05360.1

>NO01G05360.1-protein ID=NO01G05360.1-protein|Name=NO01G05360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MFCIKTTTTSFCCIGRRRGGGEEGRRGGGGGRRGGEERRGEEGRRGGGGE
EGRRREGGEEEGRRRGGGEEGRRGRGEEEGRRGGGEQGRRRGGGEEGRSR
GGAGGGAGEEQGRSRGGGEEQGEEQGRRRGGAGGGAGGGAGEEGRRAGFR
QSRSLQTGIKTSPSIIF*
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mRNA from alignment at chr1:1434356..1435703+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05360.1 ID=NO01G05360.1|Name=NO01G05360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1348bp|location=Sequence derived from alignment at chr1:1434356..1435703+ (Nannochloropsis oceanica)
GGTACTTTGTTTTTGGTTTTTATTGTCATTTCCTTCTCAATTAATGTATT
TTTTCGTATTTTTTTGGTATATTTTTTACGATATTTCTACCTCAGTTTGG
ACACCATTTTATCAAGTGGAAAAATTATGACTTGATCATTAGTGGGGAGA
CGCCAGGGAATATGGAGCTTCACAAATATCTGCGATCATCATTGGACTTG
GCGTGCGCTTCAATAAATCCACTTCCCCAATTATATCCTCATCTATCTCC
TGCACTACATTCTGCTTCCTTTTCCCTTCCCGTACCAACATTGCATCGAT
AGGGAAAGTGGGGATTTTTCCGTATTTTCTACGAACTTGTCTTTCGGATC
TCCACCTTGTCTCAGGTACATTCTTATTAATGTACATCGCCGCATCTTTC
CTGAATCCGTCTGTAGCTCTTTTACTTGGCCATACGATCACGGGCCGGGC
AGTTACATACTCAAGCAAAAGTCTGACCTGTATAGGGAAAGAAGACGATA
GAGAAAGAAAAGATAAGTCTGAGATAGAATTAAATAATTATTAAAATTAA
TAATACCTTTCCTGGAGTCCACCGATAGCTGCTGGTTTGGCTGCATTGGT
CCTTCATGTTTTAATCCCTGTACAAGTGGGTGATAATCACTTGAGTTCAC
GGTGCTCACAATGCACACACATCGGACATTGGATAGACTCTGCAAAAATG
GGCTGCACGTTACGATAATGGGCGGCTGGGCTGCACGTTACGATAGTCGT
CGATCGTCATGTTCATTTAAGTCATAGTCGTAGCCATCTTAGTCATATAC
ACGATGATTCCAACCGAAAATGACGTTGACAAATAATAGTGCGCATGTTT
TGCATTAAGACTACGACTACGTCATTTTGTTGCATAGGGAGGAGGAGGGG
AGGAGGGGAGGAGGGGAGGAGGGGAGGAGGAGGGGGGAGGAGGGGAGGAG
AGGAGAGGAGAGGAGAGGAGGGGAGGAGGGGAGGAGGAGGGGAGGAGGGG
AGGAGGAGGGAAGGAGGGGAAGAGGAGGGGAGGAGGAGGGGAGGAGGGGA
GGAGGGGAGGAGGGGAAGAGGGGAAGAGGAGGGGAGGAGGGGAGGAGGGG
AGCAGGGGAGGAGGAGGGGAGGAGGGGAGGAGGGGAGGAGCAGGGGAGGA
GCAGGGGGAGGAGCAGGAGAGGAGCAAGGGAGGAGCAGGGGAGGAGGGGA
GGAGCAGGGGGAGGAGCAGGGGAGGAGGAGGGGAGGAGCAGGGGGAGGAG
CAGGGGGAGGAGCAGGGGAGGAGGGGAGGAGGGCAGGCTTCCGACAATCT
CGGTCGTTGCAGACCGGCATAAAGACATCTCCTTCTATCATATTTTGA
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Coding sequence (CDS) from alignment at chr1:1434356..1435703+

>NO01G05360.1 ID=NO01G05360.1|Name=NO01G05360.1|organism=Nannochloropsis oceanica|type=CDS|length=504bp|location=Sequence derived from alignment at chr1:1434356..1435703+ (Nannochloropsis oceanica)
ATGTTTTGCATTAAGACTACGACTACGTCATTTTGTTGCATAGGGAGGAG
GAGGGGAGGAGGGGAGGAGGGGAGGAGGGGAGGAGGAGGGGGGAGGAGGG
GAGGAGAGGAGAGGAGAGGAGAGGAGGGGAGGAGGGGAGGAGGAGGGGAG
GAGGGGAGGAGGAGGGAAGGAGGGGAAGAGGAGGGGAGGAGGAGGGGAGG
AGGGGAGGAGGGGAGGAGGGGAAGAGGGGAAGAGGAGGGGAGGAGGGGAG
GAGGGGAGCAGGGGAGGAGGAGGGGAGGAGGGGAGGAGGGGAGGAGCAGG
GGAGGAGCAGGGGGAGGAGCAGGAGAGGAGCAAGGGAGGAGCAGGGGAGG
AGGGGAGGAGCAGGGGGAGGAGCAGGGGAGGAGGAGGGGAGGAGCAGGGG
GAGGAGCAGGGGGAGGAGCAGGGGAGGAGGGGAGGAGGGCAGGCTTCCGA
CAATCTCGGTCGTTGCAGACCGGCATAAAGACATCTCCTTCTATCATATT
TTGA
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Synonyms
Publications