NO01G05230.1, NO01G05230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05230.1
Unique NameNO01G05230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1519
Alignment locationchr1:1395218..1397329 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1395218..1397329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05230.1 vs.
Match: EWM29444.1 (Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p [Nannochloropsis gaditana])

HSP 1 Score: 498.0 bits (1281), Expect = 3.200e-137
Identity = 288/511 (56.36%), Postives = 332/511 (64.97%), Query Frame = 0 
Query:    1 MAEAEEAAFATEHARLVRLLHNQGKEDVGDLRKTSTTTARTTTSNSSSSSSSSSIPRYIRLRRPRP----VASKEEEEEEEQATRKAIVAAGGHVVVWCPAEDREGFYALPTAFRLAQWPLYQQGRVYGMDVASGVAVWALGPRPGEDVLDLCCCPGLKLCMLAERMKHKGTVTGVDISRTRLHVCRQVLLKYHIGRHTSHSLAPSSSSSSSSSSSSSSSSFSSASSTFSSSCSTSSSPPSPLTSSLWCRLLCADGCTFQHGPQQAWTGLEEDVIFDSRAYDWTGMEARGQKRMNRGTRRKELLALRALLQLFTPQE----REGEK-----KGELYDRVLVDADCTHDGSTRHMEKVAGMDEAIKSRHGGFLSREKLGGLEALQRGLISNGFRLLRPGGVLVYSTCSLSPRQNEAIVTYLLKAEAGKAVLDPITEFGEPLFSSIGEGEEGEGGREGGKGV---------GPGRLPCRWGSLSGTLVFEPRFGETSGLFIARIRKEEEEVRI 490
            M +AE A FA E  RL  LL +        +   +        S    S+S   +PRYIR+RR       V + +  EEEE   R+A++AAGG  V WCP    E FYALP  FR+AQWPLYQQG+VYGMDVASGVAVWALGPRPG++VLDLCCCPGLKLCM+AE+M H GT+TGVDISR RL VCRQ+L+KY IG                            A+    S CS            LWCRLLCADGC F+    +AW G EEDVIFDSRAYDW GMEARGQKRMNRG RR+E LALR +L    P E    REG +     +G  YDRVLVDADC+HDGSTRHM KVAG+D++I+ R GGFLS EKLGGLE LQRGL+ N FR LRPGGVLVYSTCSLSPRQNE +V +LLK EA  A+LDPI E G PLFS   E E+GEGG+               G G LPCRWGSL GTL+FEPRFGETSGLFIARI+K++    +
Sbjct:    1 MVDAENA-FAREQLRLRGLLQDH-------IASFARRDGNVENSTRVVSASDGVVPRYIRIRRMASSGNNVGANKNHEEEEHTVREAVLAAGGRRVPWCPPYASESFYALPPEFRIAQWPLYQQGKVYGMDVASGVAVWALGPRPGDNVLDLCCCPGLKLCMVAEQMHHTGTITGVDISRGRLTVCRQILVKYQIG---------------------------RAAGVLVSPCSVVP---------LWCRLLCADGCCFETEWDEAWAGREEDVIFDSRAYDWQGMEARGQKRMNRGARRRESLALRRVL---NPAENGAGREGRRERPNEEGGGYDRVLVDADCSHDGSTRHMLKVAGLDDSIRMRSGGFLSEEKLGGLEELQRGLLRNAFRRLRPGGVLVYSTCSLSPRQNEDVVAHLLKEEA-NAILDPILELGLPLFSCEME-EKGEGGKRSDDNAQANECLHACGRGYLPCRWGSLPGTLLFEPRFGETSGLFIARIKKKQSNSNV 462
The following BLAST results are available for this feature:
BLAST of NO01G05230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29444.13.200e-13756.36Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05230NO01G05230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05230.1NO01G05230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05230.1.cds1NO01G05230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05230.1.cds2NO01G05230.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05230.1.cds3NO01G05230.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05230.1.cds4NO01G05230.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05230.1 ID=NO01G05230.1|Name=NO01G05230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1519bp
ATGGCCGAGGCGGAAGAAGCGGCATTTGCAACCGAGCATGCTCGGCTCGT
GCGTCTGCTCCACAACCAAGGCAAGGAGGACGTCGGAGACCTCCGGAAAA
CCTCCACGACCACGGCTAGAACGACCACCAGCAATAGCAGTAGCAGCAGC
AGCAGCAGCTCTATCCCACGCTACATTCGTCTTCGTCGCCCTCGGCCCGT
GGCGAGTAAGGAGGAAGAGGAAGAGGAGGAGCAGGCCACGCGAAAGGCGA
TCGTTGCGGCGGGAGGTCACGTAGTCGTGTGGTGCCCAGCAGAGGATAGG
GAGGGCTTCTATGCCTTACCTACAGCCTTTCGTTTGGCGCAATGGCCGCT
ATACCAGCAAGGGCGGGTTTATGGGATGGATGTGGCGTCAGGGGTCGCGG
TATGGGCATTGGGTCCGCGACCGGGAGAGGACGTGTTGGATTTGTGTTGT
TGCCCGGGCCTGAAATTATGCATGCTGGCAGAGCGAATGAAGCACAAGGG
GACAGTCACAGGCGTAGACATCTCTCGAACCCGCCTCCATGTCTGCCGCC
AAGTCCTCCTTAAGTACCATATCGGCCGGCATACCTCCCATTCTCTTGCC
CCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTTCTCCTCAGCCTCCTCCACCTTCTCATCCTCCTGCTCCACTTCCTCCT
CCCCCCCTTCCCCCCTGACCTCCTCCTTGTGGTGTCGGTTGCTATGCGCG
GACGGCTGCACCTTCCAGCACGGCCCCCAGCAGGCGTGGACCGGATTGGA
GGAAGACGTGATTTTTGACTCGAGGGCTTATGACTGGACGGGCATGGAAG
CCCGTGGCCAGAAGCGCATGAACCGAGGGACTCGCCGAAAGGAATTACTC
GCCCTGCGTGCCCTCCTCCAGCTTTTTACTCCACAGGAGAGGGAGGGTGA
GAAGAAAGGGGAGCTGTATGACAGAGTATTGGTGGATGCGGACTGCACGC
ACGATGGGTCGACGCGGCACATGGAAAAAGTGGCGGGCATGGATGAAGCC
ATCAAATCACGACATGGCGGGTTCTTGTCCCGAGAAAAACTAGGAGGGCT
CGAGGCCCTCCAACGAGGATTGATATCTAATGGATTCCGTCTCTTGCGGC
CTGGTGGTGTGTTGGTCTACAGCACGTGCTCTTTATCTCCCCGACAGAAC
GAGGCCATCGTCACATACTTACTGAAAGCCGAAGCAGGGAAGGCAGTCCT
TGATCCTATTACTGAATTTGGCGAGCCTTTGTTTTCTTCGATTGGGGAAG
GAGAGGAGGGGGAAGGAGGGAGGGAGGGAGGGAAGGGGGTGGGGCCAGGG
CGGTTGCCGTGTCGATGGGGGAGCTTATCGGGCACATTGGTGTTTGAGCC
ACGCTTTGGGGAGACGAGTGGGTTGTTTATTGCACGGATTAGAAAAGAAG
AGGAAGAAGTAAGAATTAACTGATACTCTGACCCATTTATTAGACGAGTG
GGTTGTCTATAGCACGGAT
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protein sequence of NO01G05230.1

>NO01G05230.1-protein ID=NO01G05230.1-protein|Name=NO01G05230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MAEAEEAAFATEHARLVRLLHNQGKEDVGDLRKTSTTTARTTTSNSSSSS
SSSSIPRYIRLRRPRPVASKEEEEEEEQATRKAIVAAGGHVVVWCPAEDR
EGFYALPTAFRLAQWPLYQQGRVYGMDVASGVAVWALGPRPGEDVLDLCC
CPGLKLCMLAERMKHKGTVTGVDISRTRLHVCRQVLLKYHIGRHTSHSLA
PSSSSSSSSSSSSSSSSFSSASSTFSSSCSTSSSPPSPLTSSLWCRLLCA
DGCTFQHGPQQAWTGLEEDVIFDSRAYDWTGMEARGQKRMNRGTRRKELL
ALRALLQLFTPQEREGEKKGELYDRVLVDADCTHDGSTRHMEKVAGMDEA
IKSRHGGFLSREKLGGLEALQRGLISNGFRLLRPGGVLVYSTCSLSPRQN
EAIVTYLLKAEAGKAVLDPITEFGEPLFSSIGEGEEGEGGREGGKGVGPG
RLPCRWGSLSGTLVFEPRFGETSGLFIARIRKEEEEVRIN*
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mRNA from alignment at chr1:1395218..1397329-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05230.1 ID=NO01G05230.1|Name=NO01G05230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2112bp|location=Sequence derived from alignment at chr1:1395218..1397329- (Nannochloropsis oceanica)
ATGGCCGAGGCGGAAGAAGCGGCATTTGCAACCGAGCATGCTCGGCTCGT
GCGTCTGCTCCACAACCAAGGCAAGGAGGACGTCGGAGACCTCCGGAAAA
CCTCCACGACCACGGCTAGAACGACCACCAGCAATAGCAGTAGCAGCAGC
AGCAGCAGCTCTATCCCACGCTACATTCGTCTTCGTCGCCCTCGGCCCGT
GGCGAGTAAGGAGGAAGAGGAAGAGGAGGAGCAGGCCACGCGAAAGGCGA
TCGTTGCGGCGGGAGGTCACGTAGTCGTGTGGTGCCCAGCAGAGGATAGG
GAGGGCTTCTATGCCTTACCTACAGCCTTTCGTTTGGCGCAATGGCCGCT
ATACCAGCAAGGGCGGGTTTATGGGATGGATGTGGCGTCAGGGGTCGCGG
TATGGGCATTGGGTCCGCGACCGGGAGAGGACGTGTTGGATTTGTGTTGT
TGCCCGGGCCTGAAATTATGCATGCTGGCAGAGCGAATGAAGCACAAGGG
GACAGTCACAGGTGAGTTGATGAAGTAAAAAGAATGTGGGAGACGATTGA
AACGTAATATAATTTGGGGGTGGGACTAGAATACATGCCGCCCTACAGCC
CCCCTCCTTTCTTCCCACCCATTTGCCACGCACATACGCATGCTGCCGCA
ATTCTCCTCCCTCATCCTCCTTCTCCTTCTATTATTCCTCCTTTCCTTTC
TTTTCTTTTCCCACCGTCCAGGCGTAGACATCTCTCGAACCCGCCTCCAT
GTCTGCCGCCAAGTCCTCCTTAAGTACCATATCGGCCGGCATACCTCCCA
TTCTCTTGCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTTCTCCTCAGCCTCCTCCACCTTCTCATCCTCCTGCTCC
ACTTCCTCCTCCCCCCCTTCCCCCCTGACCTCCTCCTTGTGGTGTCGGTT
GCTATGCGCGGACGGCTGCACCTTCCAGCACGGCCCCCAGCAGGCGTGGA
CCGGATTGGAGGAAGACGTGATTTTTGACTCGAGGGCTTATGACTGGACG
GTGAGTCAGAAATGGAAGGAAGAAGGGAAGGAGGGAGGAAGGGATAAGGG
AATATGGGAATGGTCGGTTTAAGGCCTATGTGGTGCTTCAGCTCCTGGCC
AGCCTCTTGAGGCTTTCCCCTGCATCAACGCTATTCGCATGAAATACACC
CTTCCTTTCTAACCCCCTCCTCTTGTAAACGCAGGGCATGGAAGCCCGTG
GCCAGAAGCGCATGAACCGAGGGACTCGCCGAAAGGAATTACTCGCCCTG
CGTGCCCTCCTCCAGCTTTTTACTCCACAGGAGAGGGAGGGTGAGAAGAA
AGGGGAGCTGTATGACAGAGTATTGGTGGATGCGGACTGCACGCACGATG
GGTCGACGCGGCACATGGAAAAAGTGGCGGGCATGGATGAAGCCATGTGA
GTGACACGAAGAAGGATTCCTTCCTTCTTTTCTTCCTCCCTCCCTCCCTC
CCTCCACCCCCCCTTCATGGTGTGCCTCCATCAAGCTTCGTGTTTCGACT
TTGGCGATGGAAATCTTGGATACCCAGAAAAGCTGCAACCAGCACCTTGA
CCGTGATTTTCATTCATCCTCCCCCCCTCCCTCTTATCCCCTCAGCAAAT
CACGACATGGCGGGTTCTTGTCCCGAGAAAAACTAGGAGGGCTCGAGGCC
CTCCAACGAGGATTGATATCTAATGGATTCCGTCTCTTGCGGCCTGGTGG
TGTGTTGGTCTACAGCACGTGCTCTTTATCTCCCCGACAGAACGAGGCCA
TCGTCACATACTTACTGAAAGCCGAAGCAGGGAAGGCAGTCCTTGATCCT
ATTACTGAATTTGGCGAGCCTTTGTTTTCTTCGATTGGGGAAGGAGAGGA
GGGGGAAGGAGGGAGGGAGGGAGGGAAGGGGGTGGGGCCAGGGCGGTTGC
CGTGTCGATGGGGGAGCTTATCGGGCACATTGGTGTTTGAGCCACGCTTT
GGGGAGACGAGTGGGTTGTTTATTGCACGGATTAGAAAAGAAGAGGAAGA
AGTAAGAATTAACTGATACTCTGACCCATTTATTAGACGAGTGGGTTGTC
TATAGCACGGAT
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Coding sequence (CDS) from alignment at chr1:1395218..1397329-

>NO01G05230.1 ID=NO01G05230.1|Name=NO01G05230.1|organism=Nannochloropsis oceanica|type=CDS|length=1473bp|location=Sequence derived from alignment at chr1:1395218..1397329- (Nannochloropsis oceanica)
ATGGCCGAGGCGGAAGAAGCGGCATTTGCAACCGAGCATGCTCGGCTCGT
GCGTCTGCTCCACAACCAAGGCAAGGAGGACGTCGGAGACCTCCGGAAAA
CCTCCACGACCACGGCTAGAACGACCACCAGCAATAGCAGTAGCAGCAGC
AGCAGCAGCTCTATCCCACGCTACATTCGTCTTCGTCGCCCTCGGCCCGT
GGCGAGTAAGGAGGAAGAGGAAGAGGAGGAGCAGGCCACGCGAAAGGCGA
TCGTTGCGGCGGGAGGTCACGTAGTCGTGTGGTGCCCAGCAGAGGATAGG
GAGGGCTTCTATGCCTTACCTACAGCCTTTCGTTTGGCGCAATGGCCGCT
ATACCAGCAAGGGCGGGTTTATGGGATGGATGTGGCGTCAGGGGTCGCGG
TATGGGCATTGGGTCCGCGACCGGGAGAGGACGTGTTGGATTTGTGTTGT
TGCCCGGGCCTGAAATTATGCATGCTGGCAGAGCGAATGAAGCACAAGGG
GACAGTCACAGGCGTAGACATCTCTCGAACCCGCCTCCATGTCTGCCGCC
AAGTCCTCCTTAAGTACCATATCGGCCGGCATACCTCCCATTCTCTTGCC
CCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTTCTCCTCAGCCTCCTCCACCTTCTCATCCTCCTGCTCCACTTCCTCCT
CCCCCCCTTCCCCCCTGACCTCCTCCTTGTGGTGTCGGTTGCTATGCGCG
GACGGCTGCACCTTCCAGCACGGCCCCCAGCAGGCGTGGACCGGATTGGA
GGAAGACGTGATTTTTGACTCGAGGGCTTATGACTGGACGGGCATGGAAG
CCCGTGGCCAGAAGCGCATGAACCGAGGGACTCGCCGAAAGGAATTACTC
GCCCTGCGTGCCCTCCTCCAGCTTTTTACTCCACAGGAGAGGGAGGGTGA
GAAGAAAGGGGAGCTGTATGACAGAGTATTGGTGGATGCGGACTGCACGC
ACGATGGGTCGACGCGGCACATGGAAAAAGTGGCGGGCATGGATGAAGCC
ATCAAATCACGACATGGCGGGTTCTTGTCCCGAGAAAAACTAGGAGGGCT
CGAGGCCCTCCAACGAGGATTGATATCTAATGGATTCCGTCTCTTGCGGC
CTGGTGGTGTGTTGGTCTACAGCACGTGCTCTTTATCTCCCCGACAGAAC
GAGGCCATCGTCACATACTTACTGAAAGCCGAAGCAGGGAAGGCAGTCCT
TGATCCTATTACTGAATTTGGCGAGCCTTTGTTTTCTTCGATTGGGGAAG
GAGAGGAGGGGGAAGGAGGGAGGGAGGGAGGGAAGGGGGTGGGGCCAGGG
CGGTTGCCGTGTCGATGGGGGAGCTTATCGGGCACATTGGTGTTTGAGCC
ACGCTTTGGGGAGACGAGTGGGTTGTTTATTGCACGGATTAGAAAAGAAG
AGGAAGAAGTAAGAATTAACTGA
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Synonyms
Publications