NO01G05130.1, NO01G05130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05130.1
Unique NameNO01G05130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1640
Alignment locationchr1:1363202..1365243 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1363202..1365243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G05130.1 vs.
Match: EWM29460.1 (tryptophanyl-trna synthetase [Nannochloropsis gaditana])

HSP 1 Score: 675.6 bits (1742), Expect = 1.000e-190
Identity = 355/442 (80.32%), Postives = 374/442 (84.62%), Query Frame = 0 
Query:    1 MPKAALSFLLFATVMVSSLLMATVASVARRPAAGFASLGSCFSRAVPTIAFASFSTLSSNGRIRGNWLRPFSGRSRGFATMNSGSSSSSS---AIEGGERKKRVLSGVQPTGSLHLGNYLGAIRQWVKNQDEYESLFCVVDLHAITAPHDPKRLRQETIEAAALYLAAGIDPSKSTVFVQSHVLAHTELTWLLNCVTPMNWLERMIQFKEKAVKQGENVGVGLFDYPVLMAADILLYQAELVPVGEDQRQHLELTRDIARRFNDQFCNKKAKRRKVFRDPEALIVKEGARVMSLLDGTSKMSKSAENDGSRINLLDSPETIRNKIKRCKTDMSVGLEWDNPARPECTNLLNIYLAVTEKEGKTKESILEEVEGMNWGAFKPLLADAVVAHLEPIQRRYREVMEDPEHIEGILTRGAADADAIASQTLQWAKDAMGFYSLGRK 440
            M K A     F   M+ SL+ AT A +    AA  A   S      PT+AFAS  TLSS  R R        GR  G ATM +  + S++   A +  ER+KRVLSGVQPTGSLHLGNYLGAIRQWVKNQDEYES FCVVDLHAITAPHDPKRLRQETIEAAALYLAAGIDPSKST+FVQSHVLAHTELTWLLNCVTPMNWLERMIQFKEKA+KQGENVGVGLFDYP+LMAADILLYQA+LVPVGEDQRQHLELTRDIARRFNDQFCNKKAKRRKVFRDP ALIV EGARVMSLLDGTSKMSKSAENDGSRINLLDSP+TIR KIKRCKTD S+GLEWDNPARPECTNLLNIYLAVTE  G TKES+LEEV GMNWGAFKPLL +AVVAHLEPIQR+YREVMEDPEHIE ILTRGA DADAIASQTL WAKDAMGFYSLGRK
Sbjct:    1 MLKVASHSFFFKAFMIGSLIRATAAEIFHTSAA-CALRASHACHLSPTLAFASLKTLSSTSRRRR------IGRYGGMATMEASGTDSAAPGKAEQQPERRKRVLSGVQPTGSLHLGNYLGAIRQWVKNQDEYESFFCVVDLHAITAPHDPKRLRQETIEAAALYLAAGIDPSKSTIFVQSHVLAHTELTWLLNCVTPMNWLERMIQFKEKAIKQGENVGVGLFDYPILMAADILLYQADLVPVGEDQRQHLELTRDIARRFNDQFCNKKAKRRKVFRDPAALIVTEGARVMSLLDGTSKMSKSAENDGSRINLLDSPDTIRAKIKRCKTDASLGLEWDNPARPECTNLLNIYLAVTEGAGATKESVLEEVAGMNWGAFKPLLTEAVVAHLEPIQRKYREVMEDPEHIEKILTRGATDADAIASQTLGWAKDAMGFYSLGRK 435
The following BLAST results are available for this feature:
BLAST of NO01G05130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29460.11.000e-19080.32tryptophanyl-trna synthetase [Nannochloropsis gadi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05130NO01G05130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05130.1NO01G05130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05130.1.cds1NO01G05130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05130.1.cds2NO01G05130.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05130.1.cds3NO01G05130.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05130.1 ID=NO01G05130.1|Name=NO01G05130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1640bp
ACAGGACCGCGCCCCCACGACGACCAATTCCTACGCGCGTGCCCCCACAG
CCCGCAGCCTATCGACGCCTTCGAATGCCCAAAGCTGCCTTGAGTTTCCT
CCTTTTTGCGACCGTAATGGTTAGCAGCCTCCTGATGGCCACCGTGGCAA
GCGTGGCGCGACGGCCGGCGGCCGGCTTTGCCAGCCTTGGCTCGTGCTTC
AGCCGTGCTGTCCCCACGATCGCATTTGCTTCCTTCAGTACGCTCAGCAG
CAATGGTAGAATAAGAGGAAACTGGTTAAGACCCTTTTCCGGCAGGTCTC
GCGGCTTTGCCACCATGAATTCAGGCAGCAGCAGCAGCTCGAGCGCCATA
GAGGGAGGAGAACGGAAGAAGCGTGTGCTGTCAGGCGTGCAGCCCACGGG
TTCTTTACACCTGGGCAATTATCTAGGGGCCATCCGCCAGTGGGTCAAGA
ACCAGGACGAGTACGAATCCCTCTTTTGCGTTGTGGACTTGCATGCCATC
ACGGCCCCACACGACCCCAAGCGCCTCCGGCAAGAGACCATCGAAGCCGC
TGCCCTGTACTTGGCCGCTGGAATCGATCCTTCCAAAAGCACTGTCTTTG
TACAGTCCCACGTCCTGGCCCACACGGAACTCACCTGGCTTCTTAACTGC
GTGACGCCCATGAACTGGTTGGAGCGGATGATTCAATTCAAAGAGAAGGC
GGTCAAGCAAGGGGAAAACGTGGGGGTGGGTCTTTTCGACTACCCCGTAT
TGATGGCTGCGGATATTTTGCTGTACCAGGCGGAGCTTGTGCCGGTGGGA
GAGGATCAGCGGCAGCATTTGGAGTTGACGCGAGATATCGCTCGGCGCTT
CAACGACCAGTTTTGTAATAAGAAGGCCAAGAGGAGGAAGGTGTTTCGTG
ACCCTGAAGCACTCATCGTAAAGGAAGGCGCTCGCGTAATGTCCCTCCTA
GATGGGACCAGCAAAATGAGCAAGTCGGCCGAAAACGACGGGAGTCGGAT
CAACCTCCTCGATAGCCCCGAGACGATTCGGAATAAGATTAAGCGGTGTA
AGACCGATATGTCCGTGGGCTTAGAATGGGACAATCCCGCCCGGCCCGAA
TGCACCAATTTATTGAACATTTATCTGGCGGTGACCGAGAAGGAGGGGAA
GACAAAGGAAAGTATATTAGAGGAGGTAGAGGGAATGAACTGGGGTGCGT
TTAAGCCCTTGTTGGCGGACGCAGTGGTGGCCCATTTGGAGCCGATCCAG
AGGCGGTATAGGGAAGTGATGGAGGATCCGGAGCACATCGAGGGAATATT
GACGAGGGGGGCGGCAGATGCGGACGCCATTGCGAGCCAGACGCTCCAAT
GGGCCAAGGATGCAATGGGATTTTATTCCCTTGGGCGGAAGTAGAGGGAG
GTAGGTAGGTAGGTAGGTAGGTAGGTAGGTGGTTCATGGGACGGTGCGTC
AATGAAAATGAGGAAAAGAAAGCAGGAGCGCGGGTGTTGAGGGGGGGATG
GAGGGAGAGAAGGATGGAGAGGTTCTGACTTGGACACGGAAAGAAACGTG
CATATGGTGGCTATTTACGTGATGGGAGGATATCATGCATGGACCTCAAT
AAATAAAACACTATTCAGTAATTGAAGCCGTCCAAATGAT
back to top

protein sequence of NO01G05130.1

>NO01G05130.1-protein ID=NO01G05130.1-protein|Name=NO01G05130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MPKAALSFLLFATVMVSSLLMATVASVARRPAAGFASLGSCFSRAVPTIA
FASFSTLSSNGRIRGNWLRPFSGRSRGFATMNSGSSSSSSAIEGGERKKR
VLSGVQPTGSLHLGNYLGAIRQWVKNQDEYESLFCVVDLHAITAPHDPKR
LRQETIEAAALYLAAGIDPSKSTVFVQSHVLAHTELTWLLNCVTPMNWLE
RMIQFKEKAVKQGENVGVGLFDYPVLMAADILLYQAELVPVGEDQRQHLE
LTRDIARRFNDQFCNKKAKRRKVFRDPEALIVKEGARVMSLLDGTSKMSK
SAENDGSRINLLDSPETIRNKIKRCKTDMSVGLEWDNPARPECTNLLNIY
LAVTEKEGKTKESILEEVEGMNWGAFKPLLADAVVAHLEPIQRRYREVME
DPEHIEGILTRGAADADAIASQTLQWAKDAMGFYSLGRK*
back to top

mRNA from alignment at chr1:1363202..1365243-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05130.1 ID=NO01G05130.1|Name=NO01G05130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2042bp|location=Sequence derived from alignment at chr1:1363202..1365243- (Nannochloropsis oceanica)
ACAGGACCGCGCCCCCACGACGACCAATTCCTACGCGCGTGCCCCCACAG
CCCGCAGCCTATCGACGCCTTCGAATGCCCAAAGCTGCCTTGAGTTTCCT
CCTTTTTGCGACCGTAATGGTTAGCAGCCTCCTGATGGCCACCGTGGCAA
GCGTGGCGCGACGGCCGGCGGCCGGCTTTGCCAGCCTTGGCTCGTGCTTC
AGCCGTGCTGTCCCCACGATCGCATTTGCTTCCTTCAGTACGCTCAGCAG
CAATGGTAGAATAAGAGGAAACTGGTTAAGACCCTTTTCCGGCAGGTCTC
GCGGCTTTGCCACCATGAATTCAGGCAGCAGCAGCAGCTCGAGCGCCATA
GAGGGAGGAGAACGGAAGAAGCGTGTGCTGTCAGGCGTGCAGCCCACGGG
TTCTTTACACCTGGGCAATTATCTAGGGGCCATCCGCCAGTGGGTCAAGA
ACCAGGACGAGTACGAATCCCTCTTTTGCGTTGTGGACTTGCATGCCATC
ACGGTACGTTTGGTGGTCAGGAGGTTAAGGTCGGTGAGCAAAAACGAAAA
CTGGATGGGTCAGTGTCTCAATCTCTTTCAGTACCAAATCTGAGTCTTTC
CTTCCCTCGCTTATTCCCTTCGTGCCCTAGGCCCCACACGACCCCAAGCG
CCTCCGGCAAGAGACCATCGAAGCCGCTGCCCTGTACTTGGCCGCTGGAA
TCGATCCTTCCAAAAGCACTGTCTTTGTACAGTCCCACGTCCTGGCCCAC
ACGGAACTCACCTGGCTTCTTAACTGCGTGACGCCCATGAACTGGTTGGA
GCGGATGATTCAATTCAAAGAGAAGGCGGTCAAGCAAGGGGAAAACGTGG
GGGTGGGTCTTTTCGACTACCCCGTATTGATGGCTGCGGATATTTTGCTG
TACCAGGCGGAGCTTGTGCCGGTGGGAGAGGATCAGCGGCAGCATTTGGA
GTTGACGCGAGATATCGCTCGGCGCTTCAACGACCAGTTTTGTAATAAGA
AGGCCAAGAGGAGGAAGGTGAGGGCGTGTGACCATGACTGTATCCGTTAG
TGTTAGTGTGTGTGTGTGAGAGAGAGAGAGGGTGTGTGTGTGTGTAACCC
TTTGATTGGGAGTGGGGAGTTGTGGATGGAGTTTAGAATGCATGCCACTC
CTCCGATAATGTTTTGATACTATTAAGAAGGGAATGAATGTCCTGTCCTT
TGTCCACATATTTTCTCTTCCTCCCCTCTTCCTCCCCTCCTCCTTCCCTC
CCTCCTTCCATTCCTTCCTTTCGTCTCTTCTTCCCCCCATAGGTGTTTCG
TGACCCTGAAGCACTCATCGTAAAGGAAGGCGCTCGCGTAATGTCCCTCC
TAGATGGGACCAGCAAAATGAGCAAGTCGGCCGAAAACGACGGGAGTCGG
ATCAACCTCCTCGATAGCCCCGAGACGATTCGGAATAAGATTAAGCGGTG
TAAGACCGATATGTCCGTGGGCTTAGAATGGGACAATCCCGCCCGGCCCG
AATGCACCAATTTATTGAACATTTATCTGGCGGTGACCGAGAAGGAGGGG
AAGACAAAGGAAAGTATATTAGAGGAGGTAGAGGGAATGAACTGGGGTGC
GTTTAAGCCCTTGTTGGCGGACGCAGTGGTGGCCCATTTGGAGCCGATCC
AGAGGCGGTATAGGGAAGTGATGGAGGATCCGGAGCACATCGAGGGAATA
TTGACGAGGGGGGCGGCAGATGCGGACGCCATTGCGAGCCAGACGCTCCA
ATGGGCCAAGGATGCAATGGGATTTTATTCCCTTGGGCGGAAGTAGAGGG
AGGTAGGTAGGTAGGTAGGTAGGTAGGTAGGTGGTTCATGGGACGGTGCG
TCAATGAAAATGAGGAAAAGAAAGCAGGAGCGCGGGTGTTGAGGGGGGGA
TGGAGGGAGAGAAGGATGGAGAGGTTCTGACTTGGACACGGAAAGAAACG
TGCATATGGTGGCTATTTACGTGATGGGAGGATATCATGCATGGACCTCA
ATAAATAAAACACTATTCAGTAATTGAAGCCGTCCAAATGAT
back to top

Coding sequence (CDS) from alignment at chr1:1363202..1365243-

>NO01G05130.1 ID=NO01G05130.1|Name=NO01G05130.1|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at chr1:1363202..1365243- (Nannochloropsis oceanica)
ATGCCCAAAGCTGCCTTGAGTTTCCTCCTTTTTGCGACCGTAATGGTTAG
CAGCCTCCTGATGGCCACCGTGGCAAGCGTGGCGCGACGGCCGGCGGCCG
GCTTTGCCAGCCTTGGCTCGTGCTTCAGCCGTGCTGTCCCCACGATCGCA
TTTGCTTCCTTCAGTACGCTCAGCAGCAATGGTAGAATAAGAGGAAACTG
GTTAAGACCCTTTTCCGGCAGGTCTCGCGGCTTTGCCACCATGAATTCAG
GCAGCAGCAGCAGCTCGAGCGCCATAGAGGGAGGAGAACGGAAGAAGCGT
GTGCTGTCAGGCGTGCAGCCCACGGGTTCTTTACACCTGGGCAATTATCT
AGGGGCCATCCGCCAGTGGGTCAAGAACCAGGACGAGTACGAATCCCTCT
TTTGCGTTGTGGACTTGCATGCCATCACGGCCCCACACGACCCCAAGCGC
CTCCGGCAAGAGACCATCGAAGCCGCTGCCCTGTACTTGGCCGCTGGAAT
CGATCCTTCCAAAAGCACTGTCTTTGTACAGTCCCACGTCCTGGCCCACA
CGGAACTCACCTGGCTTCTTAACTGCGTGACGCCCATGAACTGGTTGGAG
CGGATGATTCAATTCAAAGAGAAGGCGGTCAAGCAAGGGGAAAACGTGGG
GGTGGGTCTTTTCGACTACCCCGTATTGATGGCTGCGGATATTTTGCTGT
ACCAGGCGGAGCTTGTGCCGGTGGGAGAGGATCAGCGGCAGCATTTGGAG
TTGACGCGAGATATCGCTCGGCGCTTCAACGACCAGTTTTGTAATAAGAA
GGCCAAGAGGAGGAAGGTGTTTCGTGACCCTGAAGCACTCATCGTAAAGG
AAGGCGCTCGCGTAATGTCCCTCCTAGATGGGACCAGCAAAATGAGCAAG
TCGGCCGAAAACGACGGGAGTCGGATCAACCTCCTCGATAGCCCCGAGAC
GATTCGGAATAAGATTAAGCGGTGTAAGACCGATATGTCCGTGGGCTTAG
AATGGGACAATCCCGCCCGGCCCGAATGCACCAATTTATTGAACATTTAT
CTGGCGGTGACCGAGAAGGAGGGGAAGACAAAGGAAAGTATATTAGAGGA
GGTAGAGGGAATGAACTGGGGTGCGTTTAAGCCCTTGTTGGCGGACGCAG
TGGTGGCCCATTTGGAGCCGATCCAGAGGCGGTATAGGGAAGTGATGGAG
GATCCGGAGCACATCGAGGGAATATTGACGAGGGGGGCGGCAGATGCGGA
CGCCATTGCGAGCCAGACGCTCCAATGGGCCAAGGATGCAATGGGATTTT
ATTCCCTTGGGCGGAAGTAG
back to top
Synonyms
Publications