NO01G05070.1, NO01G05070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05070.1
Unique NameNO01G05070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1355
Alignment locationchr1:1349418..1351421 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1349418..1351421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05070.1 vs.
Match: EWM29464.1 (deoxycytidylate deaminase [Nannochloropsis gaditana])

HSP 1 Score: 351.3 bits (900), Expect = 2.700e-93
Identity = 186/271 (68.63%), Postives = 205/271 (75.65%), Query Frame = 0 
Query:    1 MDGPSSNPSQGHHHNAPSALGIASPSGKTLLSPSSVTAATPATEAGRAAVAAYGNDSIATPSKKGICETTLQVKMASLTTTTTTATTTVPTRSAPAVAPATTTATTVSKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGYNGFPRGCSDDSLPWARHGEGGFLDTKYAYVCHAEMNAILNRNIAPLHGCRMYVALFPCNECAKLIIQSGVKDVIYVSDKYHDDAIMVASRRLFDLAGVRYRQHVPKASHITIDFSKA 272
            M   S NPS+G HH+APSA GIASPSGKTL          P+T A +A++A+         +   +  TT +  M     TT T    V        +   +   +V+KREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGYNGFPRGCSDD+LPWAR  +GGFLDTKYAYVCHAEMNAILNRNIAPLH CRMYVALFPCNECAKLIIQSGVKDVIY+SDKYHDDAIMVASRRLFDLAGVRYR+H PK + ITIDFS A
Sbjct:    1 MGEASGNPSKGRHHDAPSATGIASPSGKTL----------PSTSASQASMAS---------TAASLTSTTKEEPMGPDRRTTVTTPGQVSKTGTAQDSQGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGYNGFPRGCSDDALPWARQSDGGFLDTKYAYVCHAEMNAILNRNIAPLHDCRMYVALFPCNECAKLIIQSGVKDVIYLSDKYHDDAIMVASRRLFDLAGVRYRKHTPKVNRITIDFSSA 252
The following BLAST results are available for this feature:
BLAST of NO01G05070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29464.12.700e-9368.63deoxycytidylate deaminase [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05070NO01G05070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05070.1NO01G05070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05070.1.cds1NO01G05070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05070.1.cds2NO01G05070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05070.1.cds3NO01G05070.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05070.1.cds4NO01G05070.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05070.1 ID=NO01G05070.1|Name=NO01G05070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1355bp
AAACAATCACAGGCACTAGCTCTCTTTTTTGACGCCCTCGTTCTCGTCCT
CGACGTGCCTGGCCCAACCTCCCCACACGTAACCCGTCTCCACTTCTTCC
ACCACGGCGTCCTCCTTCGCTTCGATTTATACTGTGCGACCCTCCTGTCG
TCCGTCTGTCCTTTTAATCCTTCTTATATTTGCCTACATAACCTTCACTA
CACGCGCCTCTCCCTCACATCCCTCCTTGCCGGCCCCTTGGGGAGGTTCG
CCGAAATCCACCCCACCATCCCCACTACTACCTCGAGGCAAGTCCGGCAC
CAAAAGCAATAGCAAGAACACGAAAAAACGCAAAAGGGGCACCAGCAGTC
CTTCATCGAAAGCACAACCAACCATGGACGGTCCTTCCAGCAACCCCAGT
CAGGGACACCATCACAACGCCCCCTCCGCCTTGGGCATCGCCAGTCCCAG
CGGTAAGACATTGCTCTCCCCCTCCTCCGTTACCGCCGCAACACCCGCAA
CAGAAGCAGGGCGTGCGGCCGTCGCTGCCTATGGCAATGATTCGATTGCC
ACTCCAAGCAAAAAAGGAATTTGCGAGACAACGCTGCAGGTGAAGATGGC
CTCCCTTACTACTACTACTACGACTGCAACTACTACGGTACCAACACGTT
CAGCACCAGCGGTAGCACCAGCAACAACAACAGCAACAACTGTGTCCAAG
CGAGAAGATTACATCTCTTGGGACGATTACTTCATGGGTGTGGCATTCTT
GTCTGCGATGAGGTCTAAGGATCCTTCGACGCAGGTGGGCGCGTGTCTCG
TAGACACGGAGAATAAAATCGTGGGCATTGGCTATAATGGCTTCCCACGC
GGCTGCAGCGATGACTCCCTCCCCTGGGCTCGGCATGGGGAAGGAGGTTT
CTTGGACACCAAATACGCCTACGTGTGCCACGCCGAGATGAATGCTATCC
TGAATAGGAACATTGCGCCGTTGCATGGATGTCGTATGTATGTGGCCCTC
TTCCCCTGCAACGAGTGTGCAAAGCTCATTATCCAAAGCGGGGTCAAGGA
CGTGATATATGTCTCAGACAAGTACCACGATGATGCCATCATGGTTGCCT
CGCGCCGTTTATTTGACTTGGCTGGGGTGCGCTACCGCCAGCATGTGCCC
AAGGCCAGTCACATCACAATTGATTTTTCCAAGGCCTGTTAGGACATTAA
TGAGCGACAAAGGATTGAAAGCATTGGGAGGTGTGAGGGAGGTCGTTAAC
TAATCACACGCCACACAGTGTACATGCAACACAACAGTAAAGTAACAACC
CATCGACCCTCCTCCCCACCAACCAACCAAGAAGAAGAAAGTCAAATCTA
GCTCC
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protein sequence of NO01G05070.1

>NO01G05070.1-protein ID=NO01G05070.1-protein|Name=NO01G05070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MDGPSSNPSQGHHHNAPSALGIASPSGKTLLSPSSVTAATPATEAGRAAV
AAYGNDSIATPSKKGICETTLQVKMASLTTTTTTATTTVPTRSAPAVAPA
TTTATTVSKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIV
GIGYNGFPRGCSDDSLPWARHGEGGFLDTKYAYVCHAEMNAILNRNIAPL
HGCRMYVALFPCNECAKLIIQSGVKDVIYVSDKYHDDAIMVASRRLFDLA
GVRYRQHVPKASHITIDFSKAC*
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mRNA from alignment at chr1:1349418..1351421+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05070.1 ID=NO01G05070.1|Name=NO01G05070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2004bp|location=Sequence derived from alignment at chr1:1349418..1351421+ (Nannochloropsis oceanica)
AAACAATCACAGGCACTAGCTCTCTTTTTTGACGCCCTCGTTCTCGTCCT
CGACGTGCCTGGCCCAACCTCCCCACACGTAACCCGTCTCCACTTCTTCC
ACCACGGCGTCCTCCTTCGCTTCGATTTATACTGTGCGACCCTCCTGTCG
TCCGTCTGTCCTTTTAATCCTTCTTATATTTGCCTACATAACCTTCACTA
CACGCGCCTCTCCCTCACATCCCTCCTTGCCGGCCCCTTGGGGAGGTTCG
CCGAAATCCACCCCACCATCCCCACTACTACCTCGAGGCAAGTCCGGCAC
CAAAAGCAATAGCAAGAACACGAAAAAACGCAAAAGGGGCACCAGCAGTC
CTTCATCGAAAGCACAACCAACCATGGACGGTCCTTCCAGCAACCCCAGT
CAGGGACACCATCACAACGCCCCCTCCGCCTTGGGCATCGCCAGTCCCAG
CGGTAAGACATTGCTCTCCCCCTCCTCCGTTACCGCCGCAACACCCGCAA
CAGAAGCAGGGCGTGCGGCCGTCGCTGCCTATGGCAATGATTCGATTGCC
ACTCCAAGCAAAAAAGGAATTTGCGAGACAACGCTGCAGGTGAAGATGGC
CTCCCTTACTACTACTACTACGACTGCAACTACTACGGTACCAACACGTT
CAGCACCAGCGGTAGCACCAGCAACAACAACAGCAACAACTGTGTCCAAG
CGAGAAGATTACATCTCTTGGGACGATTACTTCATGGGTGTGGCATTCTT
GTCTGCGATGAGGTCTAAGGATCCTTCGACGCAGGTGGGCGCGTGTCTCG
TAGACACGGAGAATAAAATCGTGGGCATTGGTACATTGATGGAAAGGGAG
GGAGGGATGGAGGGGGGAGGGGGGGGGGAAGGGAGGGATGGAGGGATATA
CGGAAAGCAGTATGAAAGGGAAGAAGTTATGCGGTGGAAAGATGTGCACA
GGCACTATTTTTCCTGTTTTTATGTCATCCACTGTATGTGTCATATATCT
CGCTAAGTGCCACTATCTTTCTCTCCCTTCCCACAATTCCCACACACTCA
CACACACACACTCACAGGCTATAATGGCTTCCCACGCGGCTGCAGCGATG
ACTCCCTCCCCTGGGCTCGGCATGGGGAAGGAGGTTTCTTGGACACCAAA
TACGCCTACGTGTGCCACGCCGAGATGAATGCTATCCTGAATAGGAACAT
TGCGCCGTTGCATGGTAGGAGGGGCAGTGAGGGAGCAGGGGAGGGAGGGG
AGGTAGAGAGAAGACATCGGAAGGAGGCATGAGTTTGACGCTTGGTTTAT
TCCCATTTGTTTGTTTATTTTGCTTTCTGGTCAATCGTCTGTGCAGGCCT
CCCTTTCGAGAAAACAGACGCCTCCGAACTCCCTCTTGTTTACTAACGTT
CTCCCCTTTTTCATCCCTGCTTCCTCCCTTCCTTTCCTTTTCTCTCCTCC
TCCTGCTTAGGATGTCGTATGTATGTGGCCCTCTTCCCCTGCAACGAGTG
TGCAAAGCTCATTATCCAAAGCGGGGTCAAGGACGTGATATATGTCTCAG
ACAAGTACCACGATGATGCCATCATGGTTGCCTCGCGCCGTTTATTTGAC
TTGGCTGGGGTAAGTGCTTAAGGGTGTCCTTTTTTTTGTCCTCCTTCTTC
AGCGTTTACAATTGTCAGGATGAGCCCCAGCGAAGGTTAGGAAGCTCCTT
TATGTGACGGCCCATTGTTTATATTCGTGTCCTGTCATTCAGCACTCGCA
CCCGCACACTTTCTTTCATCAACAGGTGCGCTACCGCCAGCATGTGCCCA
AGGCCAGTCACATCACAATTGATTTTTCCAAGGCCTGTTAGGACATTAAT
GAGCGACAAAGGATTGAAAGCATTGGGAGGTGTGAGGGAGGTCGTTAACT
AATCACACGCCACACAGTGTACATGCAACACAACAGTAAAGTAACAACCC
ATCGACCCTCCTCCCCACCAACCAACCAAGAAGAAGAAAGTCAAATCTAG
CTCC
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Coding sequence (CDS) from alignment at chr1:1349418..1351421+

>NO01G05070.1 ID=NO01G05070.1|Name=NO01G05070.1|organism=Nannochloropsis oceanica|type=CDS|length=819bp|location=Sequence derived from alignment at chr1:1349418..1351421+ (Nannochloropsis oceanica)
ATGGACGGTCCTTCCAGCAACCCCAGTCAGGGACACCATCACAACGCCCC
CTCCGCCTTGGGCATCGCCAGTCCCAGCGGTAAGACATTGCTCTCCCCCT
CCTCCGTTACCGCCGCAACACCCGCAACAGAAGCAGGGCGTGCGGCCGTC
GCTGCCTATGGCAATGATTCGATTGCCACTCCAAGCAAAAAAGGAATTTG
CGAGACAACGCTGCAGGTGAAGATGGCCTCCCTTACTACTACTACTACGA
CTGCAACTACTACGGTACCAACACGTTCAGCACCAGCGGTAGCACCAGCA
ACAACAACAGCAACAACTGTGTCCAAGCGAGAAGATTACATCTCTTGGGA
CGATTACTTCATGGGTGTGGCATTCTTGTCTGCGATGAGGTCTAAGGATC
CTTCGACGCAGGTGGGCGCGTGTCTCGTAGACACGGAGAATAAAATCGTG
GGCATTGGCTATAATGGCTTCCCACGCGGCTGCAGCGATGACTCCCTCCC
CTGGGCTCGGCATGGGGAAGGAGGTTTCTTGGACACCAAATACGCCTACG
TGTGCCACGCCGAGATGAATGCTATCCTGAATAGGAACATTGCGCCGTTG
CATGGATGTCGTATGTATGTGGCCCTCTTCCCCTGCAACGAGTGTGCAAA
GCTCATTATCCAAAGCGGGGTCAAGGACGTGATATATGTCTCAGACAAGT
ACCACGATGATGCCATCATGGTTGCCTCGCGCCGTTTATTTGACTTGGCT
GGGGTGCGCTACCGCCAGCATGTGCCCAAGGCCAGTCACATCACAATTGA
TTTTTCCAAGGCCTGTTAG
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Synonyms
Publications