|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1346808..1349277 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G05060.1 vs.
Match: EWM29438.1 (hypothetical protein Naga_100083g1, partial [Nannochloropsis gaditana]) HSP 1 Score: 222.2 bits (565), Expect = 1.800e-54 Identity = 123/226 (54.42%), Postives = 155/226 (68.58%), Query Frame = 0
Query: 10 KRL-RPFPNVASY--PTQGIALCLFMLVLSHLSTTAKAFQLRTSLSSS-KFSHRLRRVQYVKMASSSSSSFSTPAPSSRSSDEGTFPYRLIDSHHHVWTDGEEPFPYANGQSAPPGLQDSGTAEKFLTLAAAAGVERSLIVQPILYLYDHSYVRSVLQAHPGKFEGMLNANPTLSPEAAAAAIVRLHGEGFKSIRFNPYIWPAGEKMDNDVGRAMFAEAGRLGMPV 232
KRL R FP V + P + L + +L L +T +A R SS+ S R++ +++ +S+SS S S++ FPYRLIDSHHHVWT G P+ YA GQSAPPGLQ+ G+ E+FL LAA AGV+RSLIVQPILY++DHSYVR+ L+ +P KF GML ANPTLSP+ A A + RL +GF S+RFNPYIWPAGEKMDN GRA++AEAGR MPV
Sbjct: 3 KRLGRHFPIVCTLQPPRNTLLLFMILLTLGRTNTFVEALVSRVHSSSAFSLSQRIQPPRHLLRMASTSSVDSV-------SNKDGFPYRLIDSHHHVWTAGLLPYAYAEGQSAPPGLQEKGSVEEFLGLAANAGVQRSLIVQPILYMFDHSYVRAALERYPEKFHGMLVANPTLSPQEATAELGRLQSQGFNSVRFNPYIWPAGEKMDNPTGRALYAEAGRRTMPV 221
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G05060.1 ID=NO01G05060.1|Name=NO01G05060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1702bp AGATACACACAACACAGGTGAATACACGGAGGAGTGAGGAAAAAAAGAGC GTGTCCAGATAAGTTGCATCCAGGACAACGCTCAATGCCGCAGCGCTTTG GCAGGAGAAGCAAACGTCTACGCCCCTTCCCCAACGTTGCCTCTTACCCC ACCCAAGGCATTGCCTTGTGCCTTTTCATGTTGGTGCTGAGCCACCTTAG CACCACCGCCAAAGCCTTCCAATTACGCACGTCTTTATCATCTTCTAAAT TCAGCCATCGTCTTCGACGAGTACAGTACGTGAAAATGGCCTCCTCGTCG TCGTCCTCCTTCTCCACTCCAGCACCGAGCAGCAGAAGTAGCGACGAGGG AACTTTTCCCTATCGGCTCATCGACTCCCACCACCACGTCTGGACGGATG GTGAGGAACCTTTCCCGTACGCCAACGGCCAGAGTGCTCCACCAGGTCTG CAAGACAGCGGGACGGCGGAGAAATTTCTGACACTGGCAGCCGCTGCAGG TGTAGAGCGTTCTTTGATCGTACAGCCAATCCTTTACCTGTACGATCATT CATACGTTCGCTCGGTTCTACAGGCCCACCCTGGCAAGTTTGAAGGTATG CTCAACGCCAACCCTACCCTCTCTCCCGAGGCAGCAGCAGCAGCCATCGT GCGGCTGCACGGGGAAGGGTTTAAGTCTATTCGATTCAATCCCTATATAT GGCCAGCTGGGGAAAAGATGGACAATGACGTTGGCAGGGCCATGTTCGCC GAAGCTGGTCGCCTTGGGATGCCTGTAGGGTTGATGCTCTTCAAAGGGCT GCACCTCCACCTCCCGGAAGTCAACGCCCTCCTCTCCCTCCCCCGCTCCC TCCATCCCCCCCCCCTGTGATTCTTGATCATTGGGGTTTTTTCCATCAAG ATGGAAGGGACGTACCAGAGGCATGGGATGCCCTGCTCTCCCTCGCGCAG TACTCGCACGTGACGGTGAAAATTTCGGCCTTTTTCCGGGTATCGTCGCA GCCGTGGCCTTTCCATGATTTGGCGCCACGATTGGAGGAGCTTGTGAGGG TATTTGGAAGTGAGAGGCTGATGTGGGGGAGCGATTTTCCCTATGTGACA ACGATGGGAGGAGGCTACGCGAAAGCACCCAGGACCGTGCTGGAATGGCG ACAGGCCGGCCTGCTGCCCTCTCTGACAGAGAGGGATTATCAAAACCTGT TCAGCGGTACTTACTTGAAGGTATTTGGGGGCCAATAGATACAGAGAGGA GGGAGGCAGTAGAAAGAGAGATGTAGGTATCTAAAAAGAAGGAAAAGGAG TGTGAGTGTGAAGGAGCAAGCAAGCATACGTCGAAAAAGGAGGAGAGCGA GGAGGAAGCAGACTGAGAGACGACAAGGAATTTTGTGATTCGGGCCCACA TGTCATGTGGTCTGTGCGATCTCACCGGACAGGCAGCAGGGTGCCATCAC CATCGCCGCACCCCGCGGTCCACTAACGAGAGGCAGGTGTACGAGACCAG TACACACTTCAGGTCTGCTAAATACTTAGATCATCACCCCCCTCCCTCTC CCTCCTTTCGGACTCATCCACCTCCTGGACACTGACGCCTTTGTCGTGCA TAGCCGTGAAGGAAAGGAGAAAGAGGAAAGAAATGACAGACTAAGCGTAG AGAGAGAGGTGAGGGGGGCAAGGAAGAAAAAACAGGAGATATATGATGGA CG back to topprotein sequence of NO01G05060.1 >NO01G05060.1-protein ID=NO01G05060.1-protein|Name=NO01G05060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp MPQRFGRRSKRLRPFPNVASYPTQGIALCLFMLVLSHLSTTAKAFQLRTS LSSSKFSHRLRRVQYVKMASSSSSSFSTPAPSSRSSDEGTFPYRLIDSHH HVWTDGEEPFPYANGQSAPPGLQDSGTAEKFLTLAAAAGVERSLIVQPIL YLYDHSYVRSVLQAHPGKFEGMLNANPTLSPEAAAAAIVRLHGEGFKSIR FNPYIWPAGEKMDNDVGRAMFAEAGRLGMPVGLMLFKGLHLHLPEVNALL SLPRSLHPPPL* back to topmRNA from alignment at chr1:1346808..1349277- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G05060.1 ID=NO01G05060.1|Name=NO01G05060.1|organism=Nannochloropsis oceanica|type=mRNA|length=2470bp|location=Sequence derived from alignment at chr1:1346808..1349277- (Nannochloropsis oceanica) AGATACACACAACACAGGTGAATACACGGAGGAGTGAGGAAAAAAAGAGC
GTGTCCAGATAAGTTGCATCCAGGACAACGCTCAATGCCGCAGCGCTTTG
GCAGGAGAAGCAAACGTCTACGCCCCTTCCCCAACGTTGCCTCTTACCCC
ACCCAAGGCATTGCCTTGTGCCTTTTCATGTTGGTGCTGAGCCACCTTAG
CACCACCGCCAAAGCCTTCCAATTACGCACGTCTTTATCATCTTCTAAAT
TCAGCCATCGTCTTCGACGAGTACAGTACGTGAAAATGGCCTCCTCGTCG
TCGTCCTCCTTCTCCACTCCAGCACCGAGCAGCAGAAGTAGCGACGAGGG
AACTTTTCCCTATCGGCTCATCGACTCCCACCACCACGTCTGGACGGATG
GTGAGGAACCTTTCCCGTACGCCAACGGCCAGAGTGCTCCACCAGGTCTG
CAAGACAGCGGGTACGTGAGAAACACAGAGACGCTCTAATGCGCTCCCCC
ATCATTTTTTTCATTTCTTCTCACATCTTCGCTTTGCACACAACACCTGA
CGACAGGACGGCGGAGAAATTTCTGACACTGGCAGCCGCTGCAGGTGTAG
AGCGTTCTTTGATCGTACAGCCAATCCTTTACCTGTACGATCATTCATGT
ACGTACTCGATCACCCTCCCTCTTTCCCTCCCTCCCTCCCTCCCTCTCCC
TCTCCTCCCTTTATCCCCTCCTCTCCCTCTGGCCCACATTTCTTCACCTC
CTCCACCTTTATCTCTTTCTTCTATCATTTAGACGTTCGCTCGGTTCTAC
AGGCCCACCCTGGCAAGTTTGAAGGTATGCTCAACGCCAACCCTACCCTC
TCTCCCGAGGCAGCAGCAGCAGCCATCGTGCGGCTGCACGGGGAAGGGTT
TAAGTCTATTCGATTCAATCCCTATATATGGCCAGCTGGGGAAAAGGTAG
GCGCATGGAAAGGAAGGAAGGAAGCAAAGAAGGAGGGAGGGAGGGAGGAA
GGGAGTGACGAATGCGAGATGCTAATTCCTAATTTTCACTGTCTCCTCTT
TTCCTCTACCTCCCCGCCTACCTCGCTGCCTCCGTTCCTCCTTTCCTCCT
TCCCTTTTTTGAGATGGACAATGACGTTGGCAGGGCCATGTTCGCCGAAG
CTGGTCGCCTTGGGATGCCTGTAGGGTTGATGCTCTTCAAAGGGCTGCAC
CTCCACCTCCCGGAAGTCAACGCCCTCCTCTCCCTCCCCCGCTCCCTCCA
TCCCCCCCCCCTGTGATTCTTGATCATTGGGGTTTTTTCCATCAAGATGG
AAGGGACGTACCAGAGGCATGGGATGCCCTGCTCTCCCTCGCGCAGTACT
CGCACGTGACGGTGAAAATTTCGGCCTTTTTCCGGGTATCGTCGCAGCCG
TGGCCTTTCCATGATTTGGCGCCACGATTGGAGGAGCTTGTGAGGGTATT
TGGAAGTGAGAGGCTGATGTGGGGGAGGTGAGGAAAGGATTTAAAAGGGA
GGAAGAGAGGGAGGGAGGGAGGGAGGAAGGGAAGGAAGGAGGGAGGGAGG
GAGGGAGGGAGAAAGGGAGGCGGAAGGTACAGCCCTGAGACGAGGGGATG
GGGTAATCGAATCAGGTCGTAGGCGTAGACCCGCCTTGTGTAGAATGGCA
CGATAAACACCCATAGATTCATAAAAAGTGACGGTGGTTTTCTTCCATTT
CCTTCCCTCTGCCAACCTCGTCCTGTCCATTCATCGCCCTTATTTGGAGG
AGCTGTTGAACGCACACCCCACAACACAAATCCTTATAAATAAATGCCCT
CACCCACCCACTCATGCACCCTCCCTGGCACATACATCTCCTTCCACAGC
GATTTTCCCTATGTGACAACGATGGGAGGAGGCTACGCGAAAGCACCCAG
GACCGTGCTGGAATGGCGACAGGCCGGCCTGCTGCCCTCTCTGACAGAGA
GGGATTATCAAAACCTGTTCAGCGGTACTTACTTGAAGGTATTTGGGGGC
CAATAGATACAGAGAGGAGGGAGGCAGTAGAAAGAGAGATGTAGGTATCT
AAAAAGAAGGAAAAGGAGTGTGAGTGTGAAGGAGCAAGCAAGCATACGTC
GAAAAAGGAGGAGAGCGAGGAGGAAGCAGACTGAGAGACGACAAGGAATT
TTGTGATTCGGGCCCACATGTCATGTGGTCTGTGCGATCTCACCGGACAG
GCAGCAGGGTGCCATCACCATCGCCGCACCCCGCGGTCCACTAACGAGAG
GCAGGTGTACGAGACCAGTACACACTTCAGGTCTGCTAAATACTTAGATC
ATCACCCCCCTCCCTCTCCCTCCTTTCGGACTCATCCACCTCCTGGACAC
TGACGCCTTTGTCGTGCATAGCCGTGAAGGAAAGGAGAAAGAGGAAAGAA
ATGACAGACTAAGCGTAGAGAGAGAGGTGAGGGGGGCAAGGAAGAAAAAA
CAGGAGATATATGATGGACG back to topCoding sequence (CDS) from alignment at chr1:1346808..1349277- >NO01G05060.1 ID=NO01G05060.1|Name=NO01G05060.1|organism=Nannochloropsis oceanica|type=CDS|length=786bp|location=Sequence derived from alignment at chr1:1346808..1349277- (Nannochloropsis oceanica) ATGCCGCAGCGCTTTGGCAGGAGAAGCAAACGTCTACGCCCCTTCCCCAA CGTTGCCTCTTACCCCACCCAAGGCATTGCCTTGTGCCTTTTCATGTTGG TGCTGAGCCACCTTAGCACCACCGCCAAAGCCTTCCAATTACGCACGTCT TTATCATCTTCTAAATTCAGCCATCGTCTTCGACGAGTACAGTACGTGAA AATGGCCTCCTCGTCGTCGTCCTCCTTCTCCACTCCAGCACCGAGCAGCA GAAGTAGCGACGAGGGAACTTTTCCCTATCGGCTCATCGACTCCCACCAC CACGTCTGGACGGATGGTGAGGAACCTTTCCCGTACGCCAACGGCCAGAG TGCTCCACCAGGTCTGCAAGACAGCGGGACGGCGGAGAAATTTCTGACAC TGGCAGCCGCTGCAGGTGTAGAGCGTTCTTTGATCGTACAGCCAATCCTT TACCTGTACGATCATTCATACGTTCGCTCGGTTCTACAGGCCCACCCTGG CAAGTTTGAAGGTATGCTCAACGCCAACCCTACCCTCTCTCCCGAGGCAG CAGCAGCAGCCATCGTGCGGCTGCACGGGGAAGGGTTTAAGTCTATTCGA TTCAATCCCTATATATGGCCAGCTGGGGAAAAGATGGACAATGACGTTGG CAGGGCCATGTTCGCCGAAGCTGGTCGCCTTGGGATGCCTGTAGGGTTGA TGCTCTTCAAAGGGCTGCACCTCCACCTCCCGGAAGTCAACGCCCTCCTC TCCCTCCCCCGCTCCCTCCATCCCCCCCCCCTGTGA back to top
|