|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1235383..1237623 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G04680.2 vs.
Match: EWM29408.1 (ion channel [Nannochloropsis gaditana]) HSP 1 Score: 746.9 bits (1927), Expect = 4.200e-212 Identity = 386/516 (74.81%), Postives = 435/516 (84.30%), Query Frame = 0
Query: 1 MGEEEPVLVKTAVHWKDEGNEFYKKGDYRAAIDAYSLAIAEAPDEPSFYGNRAAAHMMILAYESAIEDCDKAIALSPGMVKAYFRKGKALAILGKFDESIAAYRAGLQQDPNNAQGHSEKTEVETAVKALNKARDILQEARPSPNGGNGSSSSNAIARKRLFLQANTLLDVCLALAPSSFDAKLLKLECQVGLGQYDDAFNSSNHLLRLAPSLAPLLHLRATCLYRLGNLENSIKHSQQAVRSDPDNASYVALLKQVRSLDNKKKEGDTAFTHGQYQKAIQAWTEALAVDPTHKQICAKLYNNRATAYAKMRRHADAVSDCKQALALDPQYLKALKRKAESLFVLGGEENLEQCLRDYETAAGLAPEEEEREYARKMHQAKVALKRAKRKDYYRLLGLSSDATEDEIRKAYRKLALKHHPDRHTSSSEEEKAKAEKEFKNVAEAYEVLSDKEKKARYDSGVDIEDLDNPHAHGPSRGGGFGGMGG-GGIDPNILFQMFMQQQAGAGGGFGGRGRGG 516
MG++E VKTA WKDEGNE YKKGDYRAAIDAYSLAIA +PDE SFYGNRAAAHMMILAYE+AI+DC+KA+ALSP MVKAYFRKGKALA LGKFDE++ AY GLQQDPNNAQGH+EK EVE +KA KA ++LQE R + + + KR F++AN L+D CL+LA +S +LLKLECQVGLGQY++AF SNHLLRL+PSLAPLL+LRA CLY LGN E ++KH QQAVRSDPDN +YV+LLK+VR+LD KKKEGDT FT GQYQ AI AWTEALAVDP+ K + AK++NNRATAYAKMR+H +AV+DCK+ALALDPQYLKALKRKAESL+ LGGEENLEQCLRDYE AA LAP EEREYARKMHQ KVALKRAKRKD YR+LGLS+DATEDEIRKAYRKLALKHHPDRHT+SSEE KA AEK FK+VAEAYEVLSDKEK++RYDSG D+EDLDNP A S GGFGG GG GGIDPN+LFQMFMQQQA GGG GG GRGG
Sbjct: 1 MGDDEVSTVKTAAQWKDEGNELYKKGDYRAAIDAYSLAIAMSPDEASFYGNRAAAHMMILAYEAAIDDCNKALALSPNMVKAYFRKGKALATLGKFDEAMTAYHQGLQQDPNNAQGHAEKAEVEAVMKAGAKATELLQETRGPGSSTLQNGQNGGAVHKRNFVRANALVDQCLSLASASPQVRLLKLECQVGLGQYEEAFAGSNHLLRLSPSLAPLLYLRAVCLYHLGNFEGALKHLQQAVRSDPDNHAYVSLLKKVRALDAKKKEGDTCFTQGQYQPAIDAWTEALAVDPSQKAVNAKMFNNRATAYAKMRKHTEAVADCKRALALDPQYLKALKRKAESLYALGGEENLEQCLRDYEAAARLAPASEEREYARKMHQVKVALKRAKRKDLYRILGLSTDATEDEIRKAYRKLALKHHPDRHTNSSEEAKAAAEKAFKDVAEAYEVLSDKEKRSRYDSGTDVEDLDNPQAQAGSHAGGFGGFGGRGGIDPNVLFQMFMQQQA-MGGGRGGGGRGG 515
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G04680.2 ID=NO01G04680.2|Name=NO01G04680.2|organism=Nannochloropsis oceanica|type=mRNA|length=1715bp AGACAGCCAAGCCTAGGTGACGCACACCCGCTCTGCCCTGATGGGGGAGG AAGAACCTGTCTTGGTCAAGACGGCCGTGCACTGGAAAGACGAAGGTAAC GAGTTTTACAAAAAAGGCGACTATCGGGCTGCCATCGACGCCTATAGCCT GGCCATCGCCGAGGCTCCCGATGAGCCCTCATTCTACGGAAACCGAGCTG CGGCGCACATGATGATCTTGGCCTATGAAAGCGCCATCGAGGACTGTGAT AAAGCGATTGCATTGAGTCCAGGGATGGTCAAGGCGTACTTTCGGAAGGG CAAAGCGTTGGCGATATTAGGCAAATTCGACGAAAGCATAGCTGCCTACC GCGCGGGGCTCCAACAAGATCCGAACAACGCGCAGGGCCACTCCGAGAAA ACCGAGGTGGAAACAGCCGTCAAAGCCCTGAACAAAGCACGTGACATACT TCAAGAGGCCCGACCGTCGCCCAATGGGGGAAATGGCAGCAGCAGCAGCA ACGCGATCGCGAGGAAACGCCTCTTTCTGCAAGCGAACACCCTGCTGGAC GTATGTCTCGCCCTCGCGCCTTCCTCCTTTGATGCCAAGCTCCTCAAGCT CGAATGTCAAGTGGGCCTTGGCCAGTACGACGACGCCTTCAACAGCAGCA ACCACCTGCTCCGCCTCGCCCCCTCCCTGGCCCCTCTCCTGCACCTCCGG GCCACATGCCTCTACCGACTAGGCAACCTCGAAAACTCTATCAAGCATTC CCAACAAGCCGTCCGCTCCGACCCGGATAATGCCTCCTACGTGGCACTCC TTAAACAAGTGCGCTCGTTAGACAACAAAAAAAAAGAAGGCGACACCGCT TTCACGCACGGCCAGTACCAAAAAGCGATTCAGGCATGGACGGAGGCCCT TGCCGTAGACCCAACGCACAAGCAAATATGTGCCAAGCTGTACAATAACC GTGCCACCGCCTACGCTAAGATGCGAAGACACGCCGATGCCGTCTCGGAC TGCAAGCAGGCTTTGGCTCTGGATCCGCAATACCTTAAAGCCCTCAAAAG AAAAGCCGAGAGCCTGTTTGTTCTGGGGGGGGAGGAGAATTTGGAGCAGT GCTTACGTGACTACGAGACAGCGGCGGGGTTGGCGCCCGAGGAGGAGGAG AGAGAATATGCGCGGAAGATGCACCAGGCCAAGGTGGCGCTGAAGAGGGC AAAGAGGAAAGATTACTATCGCTTGCTAGGACTGTCCTCGGATGCGACGG AGGACGAGATCAGGAAGGCTTATAGGAAGTTGGCGTTGAAGCACCATCCG GACAGGCATACGAGCAGCAGCGAGGAGGAGAAGGCGAAGGCGGAGAAGGA GTTCAAGAACGTGGCCGAGGCGTATGAGGTGTTGAGCGACAAGGAGAAGA AGGCACGGTATGACAGTGGAGTGGACATCGAAGACTTGGATAACCCGCAC GCGCATGGGCCGTCGCGCGGAGGGGGCTTCGGGGGGATGGGGGGAGGGGG CATTGATCCGAATATTTTATTTCAAATGTTCATGCAGCAGCAGGCAGGGG CGGGAGGAGGGTTTGGAGGGAGAGGGAGGGGAGGTCCTTTTTAGGAGAGG GGGAGGGAAGGAGGGATGGCGTGTGGTTTGTGTGCGAACGGTATATGCGC TTGAGGATGACGATGAAGGTTGGTTGGGAGAGACAAAGAAGAAACACACA AGTGATATGAGGCAA back to topprotein sequence of NO01G04680.2 >NO01G04680.2-protein ID=NO01G04680.2-protein|Name=NO01G04680.2|organism=Nannochloropsis oceanica|type=polypeptide|length=518bp MGEEEPVLVKTAVHWKDEGNEFYKKGDYRAAIDAYSLAIAEAPDEPSFYG NRAAAHMMILAYESAIEDCDKAIALSPGMVKAYFRKGKALAILGKFDESI AAYRAGLQQDPNNAQGHSEKTEVETAVKALNKARDILQEARPSPNGGNGS SSSNAIARKRLFLQANTLLDVCLALAPSSFDAKLLKLECQVGLGQYDDAF NSSNHLLRLAPSLAPLLHLRATCLYRLGNLENSIKHSQQAVRSDPDNASY VALLKQVRSLDNKKKEGDTAFTHGQYQKAIQAWTEALAVDPTHKQICAKL YNNRATAYAKMRRHADAVSDCKQALALDPQYLKALKRKAESLFVLGGEEN LEQCLRDYETAAGLAPEEEEREYARKMHQAKVALKRAKRKDYYRLLGLSS DATEDEIRKAYRKLALKHHPDRHTSSSEEEKAKAEKEFKNVAEAYEVLSD KEKKARYDSGVDIEDLDNPHAHGPSRGGGFGGMGGGGIDPNILFQMFMQQ QAGAGGGFGGRGRGGPF* back to topmRNA from alignment at chr1:1235383..1237623+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G04680.2 ID=NO01G04680.2|Name=NO01G04680.2|organism=Nannochloropsis oceanica|type=mRNA|length=2241bp|location=Sequence derived from alignment at chr1:1235383..1237623+ (Nannochloropsis oceanica) AGACAGCCAAGCCTAGGTGACGCACACCCGCTCTGCCCTGATGGGGGAGG
AAGAACCTGTCTTGGTCAAGACGGCCGTGCACTGGTAAGTCAATCATATC
CATTTCTTCAGACTTTTTGATAGCCTCCCCACACCTCCATGCGTTGTCGA
ACTTCGTATATTATGATGGCTGCGGCCTCCACCATGCATGCCCATGTTGC
ACACGAAGATTATAGCGTAGAACCAGAAAAGTACCTGGATATGGTGCACC
TTTCTGTGATTTTGCTCTTGCCTTTTTGGCTCTTTTTTGCCGGCAAGTCC
CGCCTCGCTCCTTCTCCGCCACACGCCCGCTCCCACTGACCACGCGTATG
TCTATCCCCAACACACACTCTGTCTCTGTCCGAAACGCCATAAATCCAAC
TCCCCTGCCTACTCCCTGTATTGTTTTACAGCAGCTCGCTCTTAAGACAT
CTCCTTGTCTCCTTCTCATCCTTACCTCCCTGCCTTCTACTAAAACGCTC
ACCTCACAGGAAAGACGAAGGTAACGAGTTTTACAAAAAAGGCGACTATC
GGGCTGCCATCGACGCCTATAGCCTGGCCATCGCCGAGGCTCCCGATGAG
CCCTCATTCTACGGAAACCGAGCTGCGGCGCACATGATGATCTTGGCCTA
TGAAAGCGCCATCGAGGACTGTGATAAAGCGATTGCATTGAGTCCAGGGA
TGGTCAAGGCGTACTTTCGGAAGGGCAAAGCGTTGGCGATATTAGGTAAG
TAGATAAGGTAGGAATTACGATATGAGGGGGAACAAAAAGTGATGCAATG
CTCACGAGCACTCATCTCCATGACCTCTCCCTCCCTTCCTTCCAAGGCAA
ATTCGACGAAAGCATAGCTGCCTACCGCGCGGGGCTCCAACAAGATCCGA
ACAACGCGCAGGGCCACTCCGAGAAAACCGAGGTGGAAACAGCCGTCAAA
GCCCTGAACAAAGCACGTGACATACTTCAAGAGGCCCGACCGTCGCCCAA
TGGGGGAAATGGCAGCAGCAGCAGCAACGCGATCGCGAGGAAACGCCTCT
TTCTGCAAGCGAACACCCTGCTGGACGTATGTCTCGCCCTCGCGCCTTCC
TCCTTTGATGCCAAGCTCCTCAAGCTCGAATGTCAAGTGGGCCTTGGCCA
GTACGACGACGCCTTCAACAGCAGCAACCACCTGCTCCGCCTCGCCCCCT
CCCTGGCCCCTCTCCTGCACCTCCGGGCCACATGCCTCTACCGACTAGGC
AACCTCGAAAACTCTATCAAGCATTCCCAACAAGCCGTCCGCTCCGACCC
GGATAATGCCTCCTACGTGGCACTCCTTAAACAAGTGCGCTCGTTAGACA
ACAAAAAAAAAGAAGGCGACACCGCTTTCACGCACGGCCAGTACCAAAAA
GCGATTCAGGCATGGACGGAGGCCCTTGCCGTAGACCCAACGCACAAGCA
AATATGTGCCAAGCTGTACAATAACCGTGCCACCGCCTACGCTAAGATGC
GAAGACACGCCGATGCCGTCTCGGACTGCAAGCAGGCTTTGGCTCTGGAT
CCGCAATACCTTAAAGCCCTCAAAAGAAAAGCCGAGAGCCTGTTTGTTCT
GGGGGGGGAGGAGAATTTGGAGCAGTGCTTACGTGACTACGAGACAGCGG
CGGGGTTGGCGCCCGAGGAGGAGGAGAGAGAATATGCGCGGAAGATGCAC
CAGGCCAAGGTGGCGCTGAAGAGGGCAAAGAGGAAAGATTACTATCGCTT
GCTAGGACTGTCCTCGGATGCGACGGAGGACGAGATCAGGAAGGCTTATA
GGAAGTTGGCGTTGAAGCACCATCCGGACAGGCATACGAGCAGCAGCGAG
GAGGAGAAGGCGAAGGCGGAGAAGGAGTTCAAGAACGTGGCCGAGGCGTA
TGAGGTGTTGAGCGACAAGGAGAAGAAGGCACGGTATGACAGTGGAGTGG
ACATCGAAGACTTGGATAACCCGCACGCGCATGGGCCGTCGCGCGGAGGG
GGCTTCGGGGGGATGGGGGGAGGGGGCATTGATCCGAATATTTTATTTCA
AATGTTCATGCAGCAGCAGGCAGGGGCGGGAGGAGGGTTTGGAGGGAGAG
GGAGGGGAGGTCCTTTTTAGGAGAGGGGGAGGGAAGGAGGGATGGCGTGT
GGTTTGTGTGCGAACGGTATATGCGCTTGAGGATGACGATGAAGGTTGGT
TGGGAGAGACAAAGAAGAAACACACAAGTGATATGAGGCAA back to topCoding sequence (CDS) from alignment at chr1:1235383..1237623+ >NO01G04680.2 ID=NO01G04680.2|Name=NO01G04680.2|organism=Nannochloropsis oceanica|type=CDS|length=1554bp|location=Sequence derived from alignment at chr1:1235383..1237623+ (Nannochloropsis oceanica) ATGGGGGAGGAAGAACCTGTCTTGGTCAAGACGGCCGTGCACTGGAAAGA CGAAGGTAACGAGTTTTACAAAAAAGGCGACTATCGGGCTGCCATCGACG CCTATAGCCTGGCCATCGCCGAGGCTCCCGATGAGCCCTCATTCTACGGA AACCGAGCTGCGGCGCACATGATGATCTTGGCCTATGAAAGCGCCATCGA GGACTGTGATAAAGCGATTGCATTGAGTCCAGGGATGGTCAAGGCGTACT TTCGGAAGGGCAAAGCGTTGGCGATATTAGGCAAATTCGACGAAAGCATA GCTGCCTACCGCGCGGGGCTCCAACAAGATCCGAACAACGCGCAGGGCCA CTCCGAGAAAACCGAGGTGGAAACAGCCGTCAAAGCCCTGAACAAAGCAC GTGACATACTTCAAGAGGCCCGACCGTCGCCCAATGGGGGAAATGGCAGC AGCAGCAGCAACGCGATCGCGAGGAAACGCCTCTTTCTGCAAGCGAACAC CCTGCTGGACGTATGTCTCGCCCTCGCGCCTTCCTCCTTTGATGCCAAGC TCCTCAAGCTCGAATGTCAAGTGGGCCTTGGCCAGTACGACGACGCCTTC AACAGCAGCAACCACCTGCTCCGCCTCGCCCCCTCCCTGGCCCCTCTCCT GCACCTCCGGGCCACATGCCTCTACCGACTAGGCAACCTCGAAAACTCTA TCAAGCATTCCCAACAAGCCGTCCGCTCCGACCCGGATAATGCCTCCTAC GTGGCACTCCTTAAACAAGTGCGCTCGTTAGACAACAAAAAAAAAGAAGG CGACACCGCTTTCACGCACGGCCAGTACCAAAAAGCGATTCAGGCATGGA CGGAGGCCCTTGCCGTAGACCCAACGCACAAGCAAATATGTGCCAAGCTG TACAATAACCGTGCCACCGCCTACGCTAAGATGCGAAGACACGCCGATGC CGTCTCGGACTGCAAGCAGGCTTTGGCTCTGGATCCGCAATACCTTAAAG CCCTCAAAAGAAAAGCCGAGAGCCTGTTTGTTCTGGGGGGGGAGGAGAAT TTGGAGCAGTGCTTACGTGACTACGAGACAGCGGCGGGGTTGGCGCCCGA GGAGGAGGAGAGAGAATATGCGCGGAAGATGCACCAGGCCAAGGTGGCGC TGAAGAGGGCAAAGAGGAAAGATTACTATCGCTTGCTAGGACTGTCCTCG GATGCGACGGAGGACGAGATCAGGAAGGCTTATAGGAAGTTGGCGTTGAA GCACCATCCGGACAGGCATACGAGCAGCAGCGAGGAGGAGAAGGCGAAGG CGGAGAAGGAGTTCAAGAACGTGGCCGAGGCGTATGAGGTGTTGAGCGAC AAGGAGAAGAAGGCACGGTATGACAGTGGAGTGGACATCGAAGACTTGGA TAACCCGCACGCGCATGGGCCGTCGCGCGGAGGGGGCTTCGGGGGGATGG GGGGAGGGGGCATTGATCCGAATATTTTATTTCAAATGTTCATGCAGCAG CAGGCAGGGGCGGGAGGAGGGTTTGGAGGGAGAGGGAGGGGAGGTCCTTT TTAG back to top
|