NO01G04540.1, NO01G04540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04540.1
Unique NameNO01G04540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1704
Alignment locationchr1:1199061..1200764 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1199061..1200764 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04540.1 vs.
Match: WP_087987169.1 (S-methyl-5-thioribose kinase [Bacillus subtilis]; OUL06905.1 S-methyl-5-thioribose kinase [Bacillus subtilis])

HSP 1 Score: 66.2 bits (160), Expect = 3.400e-7
Identity = 84/326 (25.77%), Postives = 125/326 (38.34%), Query Frame = 0 
Query:  205 LSTVLGHIPEEN-LDIRLLYSGQTNQAFRIYEKRNKRTPSSDGNNDEVDDVLFIKYAPDVVGDDGEVVMRKGGRTRTEWEGYREMGRVMPGMVPRTFVLEGGEEEGGGEGGLMVVEFLREYIPYAELLRRGQSGGGERGGQGVAVQVGRLLGRYHGTVMWNSAYVRE----EELWRTFENEEHIRFWERS-FARPLLGLLRGGGEEEGGGLTKEFLGEELREIVKKDGGDRGVVWAVETLCREYKGRKEALVHADMHAMNILIKQGGRQEGREGAAIGAAAAAAATATVKIVDAEKTMWGPAGLDVGMFLANLAFYMATEEGGGRE 525
            L+  LG  P ++ L  + +  G  N  F IY++             E D  L IK A       GE       R R E       G  +P +VPR F  +        E G+ V+E L     + +++R+G   G       ++  +G  LG+   T+ ++S Y  E    ++L + F N E     ER  F  P                T +F  EELR  V+K   +  V      L + +    E L+H D+H  +I                      A+    K++D E   +GP G DVG F+ANL       +GG RE
Sbjct:   22 LAVRLGLFPSKSTLTCQEIGDGNLNYVFHIYDQ-------------EHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSDT-------EMGVTVMEDLS----HLKIVRKGLIEGEHY--PHLSQHIGEFLGK---TLFYSSDYALEPKVKKQLVKQFTNPELCDITERLVFTDPFFD-----------HDTNDF-EEELRPFVEKLWNNDNVKIEAAKLKKSFLTSAETLIHGDLHTGSIF---------------------ASEHETKVIDPEFAFYGPIGFDVGQFIANLFLNALGRDGGDRE 285
The following BLAST results are available for this feature:
BLAST of NO01G04540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_087987169.13.400e-725.77S-methyl-5-thioribose kinase [Bacillus subtilis]; ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04540NO01G04540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04540.1NO01G04540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04540.1.cds1NO01G04540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04540.1 ID=NO01G04540.1|Name=NO01G04540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1704bp
CAACAGGCTGGGACCTCCAAGCGGGCTCGATCGGCTGGCAAGGCATCTTC
ATAATCGCACGGGCGCCTTCTGCGGCTGCGTTCACGAACGTCCACAGCTG
CCGTCATGGCCATTTCTCGACCGCGTGGCCTGGGCCGCAACGGCAGCATT
TTCCTGCTGCTAATGTCGGCGCTAGTAAGCTTTGTCTTATCCTGGACCTT
CCCTTTTGCCCAGGCTTTTGTGGCCCGGCTGCCGACGCTTACTGGTGTGG
TCCGTCAGCAGGTGCCACTGACATGTTCCTTGTCCTGCTTGAGTCTCGAC
TGCCGCCATAGCAGCACCAGCAGCACAAGTACCAGTGTTGGATTTTGCAC
AAGCTCGTTTCATTTGCTTATTGCTCGCCATAGCTGTCGTCGTCGAAGCC
AGCGTCTGTGGTCGGCTGCGTCGGATGGAGAGGAAGGAACGTCAGCAGAG
AGCAATGCGGGAGGACAGAGTAGCAATGGGGGGGAAGGGGAAGAGACGCT
GGAGGCATCTGATATGGTGGACTACAATTCCTTCGCCACCCCCTTGTGGT
CATCTCCTTCGTCCTCTTCCTCCTCATTGTTCTTATCTTCTTCATCGTTC
CCTTCCTCCTTCTCCACCCCCTACTTCTCCCCGCCTCCCACCCCCCCTAC
CGACCCTATCCAACAACTCCAACAACGTATCCTTCAGAAAGCCCTAAAAT
GGCGCCGTGAGGGGCCTCTATCTACAGTCTTAGGCCACATACCCGAAGAG
AATCTCGACATCCGCCTTCTCTACTCAGGACAAACCAATCAAGCCTTCAG
AATCTACGAAAAGAGAAATAAACGCACGCCTTCCTCCGATGGTAATAACG
ACGAGGTAGACGATGTTTTATTTATAAAGTACGCCCCTGACGTGGTCGGT
GATGATGGGGAGGTGGTAATGAGGAAGGGGGGGAGGACGAGGACTGAATG
GGAAGGATACCGGGAGATGGGGCGGGTGATGCCTGGAATGGTGCCTCGAA
CATTTGTCCTTGAGGGAGGGGAGGAAGAGGGAGGAGGGGAGGGAGGATTG
ATGGTGGTGGAATTTCTAAGGGAGTATATTCCGTATGCGGAACTTTTGAG
GAGGGGGCAGTCGGGAGGGGGGGAGAGGGGTGGGCAGGGGGTGGCGGTAC
AGGTGGGAAGGTTGCTGGGGAGGTACCACGGGACGGTGATGTGGAATAGC
GCGTATGTGAGGGAAGAGGAGCTTTGGCGAACATTTGAAAATGAGGAGCA
TATTCGGTTTTGGGAGCGGTCGTTCGCGCGGCCTTTGCTGGGGCTGTTGA
GAGGAGGAGGGGAGGAGGAAGGGGGGGGTTTGACCAAGGAATTTTTGGGG
GAAGAACTGAGGGAGATCGTGAAGAAGGACGGGGGGGATAGAGGGGTGGT
GTGGGCAGTAGAGACGCTTTGTAGGGAGTATAAAGGGAGGAAAGAAGCGT
TGGTTCATGCAGATATGCACGCGATGAATATCTTGATAAAGCAGGGAGGA
AGGCAAGAAGGGAGGGAGGGAGCAGCGATAGGAGCAGCAGCAGCAGCAGC
AGCGACTGCAACGGTCAAAATCGTTGATGCCGAGAAGACTATGTGGGGTC
CCGCTGGTTTAGATGTTGGAATGTTCCTCGCGAACCTGGCGTTTTATATG
GCGACAGAGGAGGGGGGGGGGAGGGAGGACGAGGACGTGGGTGGGGGGAG
GTGA
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protein sequence of NO01G04540.1

>NO01G04540.1-protein ID=NO01G04540.1-protein|Name=NO01G04540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=533bp
MAISRPRGLGRNGSIFLLLMSALVSFVLSWTFPFAQAFVARLPTLTGVVR
QQVPLTCSLSCLSLDCRHSSTSSTSTSVGFCTSSFHLLIARHSCRRRSQR
LWSAASDGEEGTSAESNAGGQSSNGGEGEETLEASDMVDYNSFATPLWSS
PSSSSSSLFLSSSSFPSSFSTPYFSPPPTPPTDPIQQLQQRILQKALKWR
REGPLSTVLGHIPEENLDIRLLYSGQTNQAFRIYEKRNKRTPSSDGNNDE
VDDVLFIKYAPDVVGDDGEVVMRKGGRTRTEWEGYREMGRVMPGMVPRTF
VLEGGEEEGGGEGGLMVVEFLREYIPYAELLRRGQSGGGERGGQGVAVQV
GRLLGRYHGTVMWNSAYVREEELWRTFENEEHIRFWERSFARPLLGLLRG
GGEEEGGGLTKEFLGEELREIVKKDGGDRGVVWAVETLCREYKGRKEALV
HADMHAMNILIKQGGRQEGREGAAIGAAAAAAATATVKIVDAEKTMWGPA
GLDVGMFLANLAFYMATEEGGGREDEDVGGGR*
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mRNA from alignment at chr1:1199061..1200764-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04540.1 ID=NO01G04540.1|Name=NO01G04540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1704bp|location=Sequence derived from alignment at chr1:1199061..1200764- (Nannochloropsis oceanica)
CAACAGGCTGGGACCTCCAAGCGGGCTCGATCGGCTGGCAAGGCATCTTC
ATAATCGCACGGGCGCCTTCTGCGGCTGCGTTCACGAACGTCCACAGCTG
CCGTCATGGCCATTTCTCGACCGCGTGGCCTGGGCCGCAACGGCAGCATT
TTCCTGCTGCTAATGTCGGCGCTAGTAAGCTTTGTCTTATCCTGGACCTT
CCCTTTTGCCCAGGCTTTTGTGGCCCGGCTGCCGACGCTTACTGGTGTGG
TCCGTCAGCAGGTGCCACTGACATGTTCCTTGTCCTGCTTGAGTCTCGAC
TGCCGCCATAGCAGCACCAGCAGCACAAGTACCAGTGTTGGATTTTGCAC
AAGCTCGTTTCATTTGCTTATTGCTCGCCATAGCTGTCGTCGTCGAAGCC
AGCGTCTGTGGTCGGCTGCGTCGGATGGAGAGGAAGGAACGTCAGCAGAG
AGCAATGCGGGAGGACAGAGTAGCAATGGGGGGGAAGGGGAAGAGACGCT
GGAGGCATCTGATATGGTGGACTACAATTCCTTCGCCACCCCCTTGTGGT
CATCTCCTTCGTCCTCTTCCTCCTCATTGTTCTTATCTTCTTCATCGTTC
CCTTCCTCCTTCTCCACCCCCTACTTCTCCCCGCCTCCCACCCCCCCTAC
CGACCCTATCCAACAACTCCAACAACGTATCCTTCAGAAAGCCCTAAAAT
GGCGCCGTGAGGGGCCTCTATCTACAGTCTTAGGCCACATACCCGAAGAG
AATCTCGACATCCGCCTTCTCTACTCAGGACAAACCAATCAAGCCTTCAG
AATCTACGAAAAGAGAAATAAACGCACGCCTTCCTCCGATGGTAATAACG
ACGAGGTAGACGATGTTTTATTTATAAAGTACGCCCCTGACGTGGTCGGT
GATGATGGGGAGGTGGTAATGAGGAAGGGGGGGAGGACGAGGACTGAATG
GGAAGGATACCGGGAGATGGGGCGGGTGATGCCTGGAATGGTGCCTCGAA
CATTTGTCCTTGAGGGAGGGGAGGAAGAGGGAGGAGGGGAGGGAGGATTG
ATGGTGGTGGAATTTCTAAGGGAGTATATTCCGTATGCGGAACTTTTGAG
GAGGGGGCAGTCGGGAGGGGGGGAGAGGGGTGGGCAGGGGGTGGCGGTAC
AGGTGGGAAGGTTGCTGGGGAGGTACCACGGGACGGTGATGTGGAATAGC
GCGTATGTGAGGGAAGAGGAGCTTTGGCGAACATTTGAAAATGAGGAGCA
TATTCGGTTTTGGGAGCGGTCGTTCGCGCGGCCTTTGCTGGGGCTGTTGA
GAGGAGGAGGGGAGGAGGAAGGGGGGGGTTTGACCAAGGAATTTTTGGGG
GAAGAACTGAGGGAGATCGTGAAGAAGGACGGGGGGGATAGAGGGGTGGT
GTGGGCAGTAGAGACGCTTTGTAGGGAGTATAAAGGGAGGAAAGAAGCGT
TGGTTCATGCAGATATGCACGCGATGAATATCTTGATAAAGCAGGGAGGA
AGGCAAGAAGGGAGGGAGGGAGCAGCGATAGGAGCAGCAGCAGCAGCAGC
AGCGACTGCAACGGTCAAAATCGTTGATGCCGAGAAGACTATGTGGGGTC
CCGCTGGTTTAGATGTTGGAATGTTCCTCGCGAACCTGGCGTTTTATATG
GCGACAGAGGAGGGGGGGGGGAGGGAGGACGAGGACGTGGGTGGGGGGAG
GTGA
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Coding sequence (CDS) from alignment at chr1:1199061..1200764-

>NO01G04540.1 ID=NO01G04540.1|Name=NO01G04540.1|organism=Nannochloropsis oceanica|type=CDS|length=1599bp|location=Sequence derived from alignment at chr1:1199061..1200764- (Nannochloropsis oceanica)
ATGGCCATTTCTCGACCGCGTGGCCTGGGCCGCAACGGCAGCATTTTCCT
GCTGCTAATGTCGGCGCTAGTAAGCTTTGTCTTATCCTGGACCTTCCCTT
TTGCCCAGGCTTTTGTGGCCCGGCTGCCGACGCTTACTGGTGTGGTCCGT
CAGCAGGTGCCACTGACATGTTCCTTGTCCTGCTTGAGTCTCGACTGCCG
CCATAGCAGCACCAGCAGCACAAGTACCAGTGTTGGATTTTGCACAAGCT
CGTTTCATTTGCTTATTGCTCGCCATAGCTGTCGTCGTCGAAGCCAGCGT
CTGTGGTCGGCTGCGTCGGATGGAGAGGAAGGAACGTCAGCAGAGAGCAA
TGCGGGAGGACAGAGTAGCAATGGGGGGGAAGGGGAAGAGACGCTGGAGG
CATCTGATATGGTGGACTACAATTCCTTCGCCACCCCCTTGTGGTCATCT
CCTTCGTCCTCTTCCTCCTCATTGTTCTTATCTTCTTCATCGTTCCCTTC
CTCCTTCTCCACCCCCTACTTCTCCCCGCCTCCCACCCCCCCTACCGACC
CTATCCAACAACTCCAACAACGTATCCTTCAGAAAGCCCTAAAATGGCGC
CGTGAGGGGCCTCTATCTACAGTCTTAGGCCACATACCCGAAGAGAATCT
CGACATCCGCCTTCTCTACTCAGGACAAACCAATCAAGCCTTCAGAATCT
ACGAAAAGAGAAATAAACGCACGCCTTCCTCCGATGGTAATAACGACGAG
GTAGACGATGTTTTATTTATAAAGTACGCCCCTGACGTGGTCGGTGATGA
TGGGGAGGTGGTAATGAGGAAGGGGGGGAGGACGAGGACTGAATGGGAAG
GATACCGGGAGATGGGGCGGGTGATGCCTGGAATGGTGCCTCGAACATTT
GTCCTTGAGGGAGGGGAGGAAGAGGGAGGAGGGGAGGGAGGATTGATGGT
GGTGGAATTTCTAAGGGAGTATATTCCGTATGCGGAACTTTTGAGGAGGG
GGCAGTCGGGAGGGGGGGAGAGGGGTGGGCAGGGGGTGGCGGTACAGGTG
GGAAGGTTGCTGGGGAGGTACCACGGGACGGTGATGTGGAATAGCGCGTA
TGTGAGGGAAGAGGAGCTTTGGCGAACATTTGAAAATGAGGAGCATATTC
GGTTTTGGGAGCGGTCGTTCGCGCGGCCTTTGCTGGGGCTGTTGAGAGGA
GGAGGGGAGGAGGAAGGGGGGGGTTTGACCAAGGAATTTTTGGGGGAAGA
ACTGAGGGAGATCGTGAAGAAGGACGGGGGGGATAGAGGGGTGGTGTGGG
CAGTAGAGACGCTTTGTAGGGAGTATAAAGGGAGGAAAGAAGCGTTGGTT
CATGCAGATATGCACGCGATGAATATCTTGATAAAGCAGGGAGGAAGGCA
AGAAGGGAGGGAGGGAGCAGCGATAGGAGCAGCAGCAGCAGCAGCAGCGA
CTGCAACGGTCAAAATCGTTGATGCCGAGAAGACTATGTGGGGTCCCGCT
GGTTTAGATGTTGGAATGTTCCTCGCGAACCTGGCGTTTTATATGGCGAC
AGAGGAGGGGGGGGGGAGGGAGGACGAGGACGTGGGTGGGGGGAGGTGA
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Synonyms
Publications