NO01G04390.1, NO01G04390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04390.1
Unique NameNO01G04390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2287
Alignment locationchr1:1166373..1168659 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1166373..1168659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04390.1 vs.
Match: CBJ29302.1 (zinc finger protein [Ectocarpus siliculosus])

HSP 1 Score: 124.0 bits (310), Expect = 1.800e-24
Identity = 130/494 (26.32%), Postives = 218/494 (44.13%), Query Frame = 0 
Query:  220 AGRGERGGRLGEGGRGDNSDSSSSSSNPFGSPSIHPSALTMAAASQGGAEAEPVVAAVEEGEDAEGAYK--CAPCDKAFQTESQHAAHISAHEECHYPTCTFQGSRQVVGGHYRVAHGKYRGNGFRVLKVEGRSFRILVGNAPEEVEQWREDRRKNFPTAENVAKRRMEMR--------------GGRGGREGGGKKRPRAEEVDEGRGGSKQARA-----------EC---------GGGLLGFGE----AYASEGQGEQEVLGNEEIPTVVRTAVEKEADVAMRTSLLYG-------VCRAYLRNQCPLSAARCRYRHGPTKGGGGLMYCRFYTKPGGGCHHGEGCQFVHDQSLKEELERWVVERRAQKKEEREAEVAEGEMECGTKRPGKTIKQQKQQQQQQSTAGTAAATGPSRELTLLKRLLGMEVEKETNLVLGCIRYLVEENFFKNKT-----SPVSSSVVSRSSLSPVSQTSVAGVMREGGEEEGE 662
            +GR +     G   +     + + S++   +P++  +     A+ + GA+   + AA   G  A GA K  C PC+K F TE+   AH+ +H  C    C F   R++V  H+   HG++ G+GF+++ VEG+ FR+L+G +P+EV +WR +RRK +PT EN A++  + +               GRG   G G+ R R      GRGG+   RA            C         GGG +  GE    A A  G+  +E  G      V R   E        T  + G       +C  YL+ +C      C + H   +       C ++    G CH G+GC F+HD                + +E+  AE  +      T    K  K +K  + +++ A  AA +  S+  TLL++LL  ++ +E+++ L  +R++V+  FF++       +  S++    +S  P    + AG     G++ G+
Sbjct:    5 SGRNDINSSGGTAQQQQFKTAGTISNHAGATPTVGAAGARSVASDKPGAQQTSLAAASTAGAAAGGAAKLSCEPCEKEFTTEAARQAHLQSHVPCPEKGCGFSALRKIVNNHHEAKHGQFSGSGFQMIDVEGKKFRVLLGTSPDEVAEWRAERRKRWPTDENKARKEEDEKKRRALGDLGPDPGPAGRGRGRGRGRGRGRDRGGGGGRGGASAQRAAPGQNGAAVSSACAAGTAAGGGGGGAVVDGESASNAGAEGGKRPREEDGAGSSLKVARVGDESAVVQGEGTRKVAGAGGGNKRLCTFYLKGRCD-KGEACTFSHDVERKN-----CSYFM--SGRCHRGKGCLFMHDH---------------EAREKARAEAGD------TAADEKLTKAEKSAKNKKAAAEAAAVSAASKP-TLLRKLLAPQLHRESSIALQAVRFIVQSKFFQDDAAAAGGASASAAAPETASAPPSPSAAPAGGPASAGDDTGK 468
The following BLAST results are available for this feature:
BLAST of NO01G04390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ29302.11.800e-2426.32zinc finger protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04390NO01G04390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04390.1NO01G04390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04390.1.cds1NO01G04390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04390.1 ID=NO01G04390.1|Name=NO01G04390.1|organism=Nannochloropsis oceanica|type=mRNA|length=2287bp
CCAACGCTTCCCCATGCTCCCCAAAACAGCCCGCCAGCCATGTACCAGAA
CCCCTACGTCTATGCGGGCAGGTCATTAGCTCCACAGCAGTCGCAGCAAA
AACAGCATGCGGACTATACGTCCAGTCTCTATGGAAATTACCCGTCCCCC
ACGCCCTACCCCGGCTATGCTCCTCTTCCTCCAGCTCCCCACCACCAAAG
CATCGCAGCCTACTCCAGCGGCCCTCCCCCGCCGGAGACGTACGTCTGCC
ATTCTTGCGGGCAGCGTGGAGCTCACTGGGTGACGAATTGCCCGGCCGTG
ACAGGGGGAGGTTCCAAGCAGCCGCAGCAGCAGCAGCAGCAGCAGCAGGA
AGCACCACCACTCATGCCCTACCACCGGCCCCATCCCCCGCGATATCAGC
AGCAACAGTATCCACAGTACCAACCGCATCAATATCAGCAGCAGCATCTA
CAGCAGCGAGCATCACCACCACAGCAGCACCAGCAGCCACAACACCTGCG
ACAGAACCAGCAAGTTCAATCCCAGCAGCAGCAACATGACTCGCAGCAAC
AGCAGCAGCAGCAGCCTTTGCAAGCGTGGCAAGGAGGAGGAAGGGGAGTA
GGAGGAAGAAGAGGAAGGCGAGGGGGAGGACGGGGAGGAGGAAGAGGAGA
GAGAGGAAGGGGCATGGGGAATGGAAGAGGAGGTCGCGGAGATTGGGCCG
GCAGAGGCGAGAGAGGAGGTCGATTAGGAGAAGGAGGACGAGGAGACAAC
AGCGACAGCAGCAGCAGTAGTAGCAATCCCTTTGGTAGCCCAAGCATCCA
CCCATCTGCACTTACAATGGCTGCTGCGTCACAAGGAGGAGCAGAAGCAG
AACCAGTGGTAGCAGCTGTAGAGGAAGGGGAGGACGCAGAAGGAGCATAC
AAATGCGCCCCCTGCGACAAGGCCTTCCAAACCGAATCTCAACATGCCGC
GCACATCTCTGCCCACGAAGAATGCCACTACCCAACTTGTACTTTTCAAG
GCTCGCGGCAAGTGGTGGGAGGTCACTATAGAGTAGCGCACGGCAAATAT
CGTGGAAACGGATTCCGTGTGCTCAAGGTGGAAGGGAGGAGTTTCAGGAT
TTTGGTTGGGAATGCACCGGAGGAGGTAGAGCAGTGGAGGGAGGATCGAC
GCAAGAACTTCCCGACGGCCGAGAATGTGGCGAAGCGAAGGATGGAGATG
CGAGGTGGAAGGGGAGGAAGAGAGGGAGGGGGAAAGAAGAGGCCCAGGGC
GGAGGAGGTGGACGAAGGGAGGGGAGGGAGCAAGCAGGCACGGGCGGAGT
GCGGAGGGGGTTTGTTGGGGTTTGGGGAGGCGTATGCGAGCGAGGGACAG
GGAGAACAAGAGGTACTAGGGAATGAAGAGATACCGACAGTGGTCCGAAC
AGCGGTGGAGAAGGAGGCGGACGTGGCAATGCGTACTTCGTTGTTGTATG
GTGTTTGTCGTGCTTATTTAAGGAATCAGTGTCCGCTGAGCGCGGCGAGG
TGTCGATACCGACACGGGCCCACCAAGGGAGGAGGAGGGTTGATGTATTG
TCGGTTTTACACCAAGCCGGGGGGTGGGTGTCATCATGGAGAGGGCTGCC
AGTTCGTTCACGATCAGTCCTTGAAGGAGGAGTTGGAACGGTGGGTGGTG
GAAAGGAGGGCGCAGAAGAAGGAGGAGAGGGAGGCCGAAGTTGCAGAGGG
AGAGATGGAGTGCGGAACGAAACGGCCTGGAAAGACGATCAAACAGCAGA
AGCAGCAGCAGCAGCAGCAGTCTACGGCTGGGACGGCAGCGGCGACGGGG
CCTTCAAGAGAGCTGACGTTGTTGAAGAGGCTCTTGGGCATGGAGGTTGA
GAAGGAGACGAACTTGGTCCTGGGTTGTATTCGATATTTGGTAGAGGAAA
ATTTCTTCAAGAATAAAACGTCGCCTGTATCGTCGTCGGTAGTTTCTAGG
TCTTCGTTGTCACCTGTGTCGCAAACGTCAGTTGCGGGTGTGATGAGGGA
GGGAGGGGAAGAGGAAGGAGAGGGCGTGATAGTTGACGAGGCGGAAGGAG
AAGGAGCAGTCAAGGAGCTCGTCTACAAGACAGCGGTGATAGCATGAAAA
ATATTGGAGTGTGGAAATGCCGACGTTAAAAAAGAAAAAAGAAAAAAAGT
GAACACACGATGCCTTCCTCCTATCAACGGAAGCGAAAAAGACTTTGGAA
ATAGGTACTCATTTATCACCACGATCGATGGTGTCCGAAGCCACAAAGGA
GAAAAATCCAAAGTACCAGTGTGTAAACAAACATCAG
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protein sequence of NO01G04390.1

>NO01G04390.1-protein ID=NO01G04390.1-protein|Name=NO01G04390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=686bp
MYQNPYVYAGRSLAPQQSQQKQHADYTSSLYGNYPSPTPYPGYAPLPPAP
HHQSIAAYSSGPPPPETYVCHSCGQRGAHWVTNCPAVTGGGSKQPQQQQQ
QQQEAPPLMPYHRPHPPRYQQQQYPQYQPHQYQQQHLQQRASPPQQHQQP
QHLRQNQQVQSQQQQHDSQQQQQQQPLQAWQGGGRGVGGRRGRRGGGRGG
GRGERGRGMGNGRGGRGDWAGRGERGGRLGEGGRGDNSDSSSSSSNPFGS
PSIHPSALTMAAASQGGAEAEPVVAAVEEGEDAEGAYKCAPCDKAFQTES
QHAAHISAHEECHYPTCTFQGSRQVVGGHYRVAHGKYRGNGFRVLKVEGR
SFRILVGNAPEEVEQWREDRRKNFPTAENVAKRRMEMRGGRGGREGGGKK
RPRAEEVDEGRGGSKQARAECGGGLLGFGEAYASEGQGEQEVLGNEEIPT
VVRTAVEKEADVAMRTSLLYGVCRAYLRNQCPLSAARCRYRHGPTKGGGG
LMYCRFYTKPGGGCHHGEGCQFVHDQSLKEELERWVVERRAQKKEEREAE
VAEGEMECGTKRPGKTIKQQKQQQQQQSTAGTAAATGPSRELTLLKRLLG
MEVEKETNLVLGCIRYLVEENFFKNKTSPVSSSVVSRSSLSPVSQTSVAG
VMREGGEEEGEGVIVDEAEGEGAVKELVYKTAVIA*
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mRNA from alignment at chr1:1166373..1168659+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04390.1 ID=NO01G04390.1|Name=NO01G04390.1|organism=Nannochloropsis oceanica|type=mRNA|length=2287bp|location=Sequence derived from alignment at chr1:1166373..1168659+ (Nannochloropsis oceanica)
CCAACGCTTCCCCATGCTCCCCAAAACAGCCCGCCAGCCATGTACCAGAA
CCCCTACGTCTATGCGGGCAGGTCATTAGCTCCACAGCAGTCGCAGCAAA
AACAGCATGCGGACTATACGTCCAGTCTCTATGGAAATTACCCGTCCCCC
ACGCCCTACCCCGGCTATGCTCCTCTTCCTCCAGCTCCCCACCACCAAAG
CATCGCAGCCTACTCCAGCGGCCCTCCCCCGCCGGAGACGTACGTCTGCC
ATTCTTGCGGGCAGCGTGGAGCTCACTGGGTGACGAATTGCCCGGCCGTG
ACAGGGGGAGGTTCCAAGCAGCCGCAGCAGCAGCAGCAGCAGCAGCAGGA
AGCACCACCACTCATGCCCTACCACCGGCCCCATCCCCCGCGATATCAGC
AGCAACAGTATCCACAGTACCAACCGCATCAATATCAGCAGCAGCATCTA
CAGCAGCGAGCATCACCACCACAGCAGCACCAGCAGCCACAACACCTGCG
ACAGAACCAGCAAGTTCAATCCCAGCAGCAGCAACATGACTCGCAGCAAC
AGCAGCAGCAGCAGCCTTTGCAAGCGTGGCAAGGAGGAGGAAGGGGAGTA
GGAGGAAGAAGAGGAAGGCGAGGGGGAGGACGGGGAGGAGGAAGAGGAGA
GAGAGGAAGGGGCATGGGGAATGGAAGAGGAGGTCGCGGAGATTGGGCCG
GCAGAGGCGAGAGAGGAGGTCGATTAGGAGAAGGAGGACGAGGAGACAAC
AGCGACAGCAGCAGCAGTAGTAGCAATCCCTTTGGTAGCCCAAGCATCCA
CCCATCTGCACTTACAATGGCTGCTGCGTCACAAGGAGGAGCAGAAGCAG
AACCAGTGGTAGCAGCTGTAGAGGAAGGGGAGGACGCAGAAGGAGCATAC
AAATGCGCCCCCTGCGACAAGGCCTTCCAAACCGAATCTCAACATGCCGC
GCACATCTCTGCCCACGAAGAATGCCACTACCCAACTTGTACTTTTCAAG
GCTCGCGGCAAGTGGTGGGAGGTCACTATAGAGTAGCGCACGGCAAATAT
CGTGGAAACGGATTCCGTGTGCTCAAGGTGGAAGGGAGGAGTTTCAGGAT
TTTGGTTGGGAATGCACCGGAGGAGGTAGAGCAGTGGAGGGAGGATCGAC
GCAAGAACTTCCCGACGGCCGAGAATGTGGCGAAGCGAAGGATGGAGATG
CGAGGTGGAAGGGGAGGAAGAGAGGGAGGGGGAAAGAAGAGGCCCAGGGC
GGAGGAGGTGGACGAAGGGAGGGGAGGGAGCAAGCAGGCACGGGCGGAGT
GCGGAGGGGGTTTGTTGGGGTTTGGGGAGGCGTATGCGAGCGAGGGACAG
GGAGAACAAGAGGTACTAGGGAATGAAGAGATACCGACAGTGGTCCGAAC
AGCGGTGGAGAAGGAGGCGGACGTGGCAATGCGTACTTCGTTGTTGTATG
GTGTTTGTCGTGCTTATTTAAGGAATCAGTGTCCGCTGAGCGCGGCGAGG
TGTCGATACCGACACGGGCCCACCAAGGGAGGAGGAGGGTTGATGTATTG
TCGGTTTTACACCAAGCCGGGGGGTGGGTGTCATCATGGAGAGGGCTGCC
AGTTCGTTCACGATCAGTCCTTGAAGGAGGAGTTGGAACGGTGGGTGGTG
GAAAGGAGGGCGCAGAAGAAGGAGGAGAGGGAGGCCGAAGTTGCAGAGGG
AGAGATGGAGTGCGGAACGAAACGGCCTGGAAAGACGATCAAACAGCAGA
AGCAGCAGCAGCAGCAGCAGTCTACGGCTGGGACGGCAGCGGCGACGGGG
CCTTCAAGAGAGCTGACGTTGTTGAAGAGGCTCTTGGGCATGGAGGTTGA
GAAGGAGACGAACTTGGTCCTGGGTTGTATTCGATATTTGGTAGAGGAAA
ATTTCTTCAAGAATAAAACGTCGCCTGTATCGTCGTCGGTAGTTTCTAGG
TCTTCGTTGTCACCTGTGTCGCAAACGTCAGTTGCGGGTGTGATGAGGGA
GGGAGGGGAAGAGGAAGGAGAGGGCGTGATAGTTGACGAGGCGGAAGGAG
AAGGAGCAGTCAAGGAGCTCGTCTACAAGACAGCGGTGATAGCATGAAAA
ATATTGGAGTGTGGAAATGCCGACGTTAAAAAAGAAAAAAGAAAAAAAGT
GAACACACGATGCCTTCCTCCTATCAACGGAAGCGAAAAAGACTTTGGAA
ATAGGTACTCATTTATCACCACGATCGATGGTGTCCGAAGCCACAAAGGA
GAAAAATCCAAAGTACCAGTGTGTAAACAAACATCAG
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Coding sequence (CDS) from alignment at chr1:1166373..1168659+

>NO01G04390.1 ID=NO01G04390.1|Name=NO01G04390.1|organism=Nannochloropsis oceanica|type=CDS|length=2058bp|location=Sequence derived from alignment at chr1:1166373..1168659+ (Nannochloropsis oceanica)
ATGTACCAGAACCCCTACGTCTATGCGGGCAGGTCATTAGCTCCACAGCA
GTCGCAGCAAAAACAGCATGCGGACTATACGTCCAGTCTCTATGGAAATT
ACCCGTCCCCCACGCCCTACCCCGGCTATGCTCCTCTTCCTCCAGCTCCC
CACCACCAAAGCATCGCAGCCTACTCCAGCGGCCCTCCCCCGCCGGAGAC
GTACGTCTGCCATTCTTGCGGGCAGCGTGGAGCTCACTGGGTGACGAATT
GCCCGGCCGTGACAGGGGGAGGTTCCAAGCAGCCGCAGCAGCAGCAGCAG
CAGCAGCAGGAAGCACCACCACTCATGCCCTACCACCGGCCCCATCCCCC
GCGATATCAGCAGCAACAGTATCCACAGTACCAACCGCATCAATATCAGC
AGCAGCATCTACAGCAGCGAGCATCACCACCACAGCAGCACCAGCAGCCA
CAACACCTGCGACAGAACCAGCAAGTTCAATCCCAGCAGCAGCAACATGA
CTCGCAGCAACAGCAGCAGCAGCAGCCTTTGCAAGCGTGGCAAGGAGGAG
GAAGGGGAGTAGGAGGAAGAAGAGGAAGGCGAGGGGGAGGACGGGGAGGA
GGAAGAGGAGAGAGAGGAAGGGGCATGGGGAATGGAAGAGGAGGTCGCGG
AGATTGGGCCGGCAGAGGCGAGAGAGGAGGTCGATTAGGAGAAGGAGGAC
GAGGAGACAACAGCGACAGCAGCAGCAGTAGTAGCAATCCCTTTGGTAGC
CCAAGCATCCACCCATCTGCACTTACAATGGCTGCTGCGTCACAAGGAGG
AGCAGAAGCAGAACCAGTGGTAGCAGCTGTAGAGGAAGGGGAGGACGCAG
AAGGAGCATACAAATGCGCCCCCTGCGACAAGGCCTTCCAAACCGAATCT
CAACATGCCGCGCACATCTCTGCCCACGAAGAATGCCACTACCCAACTTG
TACTTTTCAAGGCTCGCGGCAAGTGGTGGGAGGTCACTATAGAGTAGCGC
ACGGCAAATATCGTGGAAACGGATTCCGTGTGCTCAAGGTGGAAGGGAGG
AGTTTCAGGATTTTGGTTGGGAATGCACCGGAGGAGGTAGAGCAGTGGAG
GGAGGATCGACGCAAGAACTTCCCGACGGCCGAGAATGTGGCGAAGCGAA
GGATGGAGATGCGAGGTGGAAGGGGAGGAAGAGAGGGAGGGGGAAAGAAG
AGGCCCAGGGCGGAGGAGGTGGACGAAGGGAGGGGAGGGAGCAAGCAGGC
ACGGGCGGAGTGCGGAGGGGGTTTGTTGGGGTTTGGGGAGGCGTATGCGA
GCGAGGGACAGGGAGAACAAGAGGTACTAGGGAATGAAGAGATACCGACA
GTGGTCCGAACAGCGGTGGAGAAGGAGGCGGACGTGGCAATGCGTACTTC
GTTGTTGTATGGTGTTTGTCGTGCTTATTTAAGGAATCAGTGTCCGCTGA
GCGCGGCGAGGTGTCGATACCGACACGGGCCCACCAAGGGAGGAGGAGGG
TTGATGTATTGTCGGTTTTACACCAAGCCGGGGGGTGGGTGTCATCATGG
AGAGGGCTGCCAGTTCGTTCACGATCAGTCCTTGAAGGAGGAGTTGGAAC
GGTGGGTGGTGGAAAGGAGGGCGCAGAAGAAGGAGGAGAGGGAGGCCGAA
GTTGCAGAGGGAGAGATGGAGTGCGGAACGAAACGGCCTGGAAAGACGAT
CAAACAGCAGAAGCAGCAGCAGCAGCAGCAGTCTACGGCTGGGACGGCAG
CGGCGACGGGGCCTTCAAGAGAGCTGACGTTGTTGAAGAGGCTCTTGGGC
ATGGAGGTTGAGAAGGAGACGAACTTGGTCCTGGGTTGTATTCGATATTT
GGTAGAGGAAAATTTCTTCAAGAATAAAACGTCGCCTGTATCGTCGTCGG
TAGTTTCTAGGTCTTCGTTGTCACCTGTGTCGCAAACGTCAGTTGCGGGT
GTGATGAGGGAGGGAGGGGAAGAGGAAGGAGAGGGCGTGATAGTTGACGA
GGCGGAAGGAGAAGGAGCAGTCAAGGAGCTCGTCTACAAGACAGCGGTGA
TAGCATGA
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Synonyms
Publications