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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1141884..1144073 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G04270.1 vs.
Match: EWM29359.1 (hypothetical protein Naga_100028g36 [Nannochloropsis gaditana]) HSP 1 Score: 753.1 bits (1943), Expect = 8.300e-214 Identity = 487/767 (63.49%), Postives = 546/767 (71.19%), Query Frame = 0
Query: 1 MTLWTSPVPMHMTGKEVTAPRMDTLNQQERNVSTPVSAPLAAQGASAGAG----------------RSSSSSSNNAPSQRRQTLGTVPSAAEIHQSQEKWLEFAPTSPQRRASFVSEPGAIDGNPFEIFKEPARIDSLGTQKQSFYEAGTSYSVKQHAPPLSSASSPPPSIPPPPTTTQCNTTFASSSSSLG---LNSS-RPASRSSNPFYEAPLSPIRYNKPVAKVELSPQSSALSTAAFMELNPLRRTESPTASIPLDQLKLVTYNKEQAAIAAAVAAQQQEQMQQERLQQQQQQQQQQQQQQQQQQQWGAWPQQQRQ----QQQQWGAWPQQQ------QQHQP--PTEWGAFGSAQPKQQSQQQQQQQQQQQQQEGFGDSFCWPPAAGPRERAASVGTVAKAPNSDELNLFLSG--VGGGKEG-----GGGAIFDPVRQKSLAESSFDLSVGAFFPEE---AVAKEGGRARRSSSRMGYGEEEEEDEEEEPVDHHDEEDDGSTGGDGIGGLEMQDDHFRHEGEGGREGRGVNEGASGMYYEVTFTAPTTFGMLLERKDEWTRGAVARRERTVVTLVVEGGEAEGKGVGLGSMLASINGEDVTGLTYKETLERIKSQARPMTVVFERESLKEEVLQGYFFVSKGPFFSNPTTMDKWKRKYIVLGGPIAKKNVFQIYDSKRAYHNTVVALFQRKRPAHRVKTYALTYAFKLSPLQERKMEGHTAPLKFFAFMTPAARFKSIRIASETRKNVAALHERFGRFAGKS 726
MTLWTSPVPMHM GK+VTAPRM+T Q+ S VS LA+ GA GAG +S S+++ AP QRRQTL VPSAAE+H QEKWLEFAPTSPQRRASFV EPG +DGNPFEIFKEPAR D G+ QSFYEAG SYS KQHAPP S+ASS + P + T+ +SS LG L+SS RP+S + NPF EAPLSPIRYNKP+AKVELSPQS+ALS AF L+PL+RTESPTAS+PLDQLK+ YN+EQ +AAA AA++Q + QE ++Q Q QQ Q QQ PQ Q + QQ W AWP QQ Q QP TEW AFG++ Q+ Q F ++F W G PNSD+ + L G GGG++G GGGAIFDPVRQKSLA++SFDLSVG FFPEE A G +RRSS G G EEE+EE DH +EEDD S GGDG G LEMQ++HF GEGG G ASGMYYEV FTAPTTFGMLLERKDEW RG+VARRERTVVTLVVEGGEAE KGV +GSM+ SINGE+VTGLTYKETLERIK QARPM VVFERESL E+VLQGYFFVSKGPFFSNPTTMDKWKRKYIVLGGPIAKKNV QIYDSKRAYHNTVVALFQRKRP+HRVKTYALTYAFKLS LQER+M+GHTAPLKFFAFMTPAARFKS+RIASETRK+V L ERF RFAGKS
Sbjct: 1 MTLWTSPVPMHMAGKQVTAPRMETA-VQDGEPSNTVSVVLAS-GAGDGAGSNLGSGASNNFTHSNSSASGSTTSTAPHQRRQTLANVPSAAEVHGRQEKWLEFAPTSPQRRASFVDEPGVVDGNPFEIFKEPARADHFGS--QSFYEAGASYSAKQHAPPPSAASS---VVSRPASATR----LTASSIPLGPERLDSSYRPSSSTGNPFCEAPLSPIRYNKPIAKVELSPQSTALSAVAFSALDPLKRTESPTASVPLDQLKISAYNREQEVLAAAKAAEEQGKQFQESEHYRRQLQLQQPQPTAHFQQNLPQPQGQAEQPHPQQGDWSAWPMQQGVLQAASQAQPASSTEWDAFGAS-------PTVFPQKAPPSQPTFDNNFGWQSIPG--------AFTTTTPNSDDFRV-LGGHAAGGGEDGGEGKRGGGAIFDPVRQKSLADASFDLSVGGFFPEEPTGAHTNAGTGSRRSS---GAGHAEEEEEEGGLEDHAEEEDDDSMGGDGTGELEMQEEHF---GEGGSGLEGRQRSASGMYYEVAFTAPTTFGMLLERKDEWVRGSVARRERTVVTLVVEGGEAEAKGVAVGSMIVSINGEEVTGLTYKETLERIKGQARPMQVVFERESLNEDVLQGYFFVSKGPFFSNPTTMDKWKRKYIVLGGPIAKKNVLQIYDSKRAYHNTVVALFQRKRPSHRVKTYALTYAFKLSQLQERRMDGHTAPLKFFAFMTPAARFKSVRIASETRKSVQGLQERFSRFAGKS 734
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G04270.1 ID=NO01G04270.1|Name=NO01G04270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2190bp ATGACGCTGTGGACCAGCCCCGTACCGATGCATATGACGGGCAAGGAGGT CACGGCACCACGGATGGACACCCTTAACCAACAAGAAAGAAACGTCTCCA CCCCCGTCTCGGCCCCCCTCGCCGCCCAGGGCGCTAGCGCCGGCGCTGGA CGTAGCAGCAGTAGCTCGAGCAACAATGCACCATCGCAACGTCGCCAAAC TCTGGGGACGGTTCCGTCGGCGGCAGAAATACACCAAAGCCAAGAGAAAT GGCTTGAATTCGCCCCCACTTCTCCCCAACGACGTGCCTCCTTTGTCAGC GAGCCTGGCGCAATTGATGGGAACCCCTTCGAGATCTTCAAGGAGCCCGC ACGCATTGATAGCCTTGGCACACAAAAGCAAAGTTTCTATGAGGCAGGGA CATCCTACTCCGTCAAACAACATGCCCCCCCCCTTTCCTCAGCCTCTTCC CCTCCCCCCTCTATTCCGCCTCCCCCAACTACCACCCAATGCAACACCAC TTTCGCCTCCTCCTCCTCGTCCCTTGGTCTGAACTCTTCCCGCCCAGCTT CTCGAAGTTCCAACCCGTTCTACGAAGCTCCCCTGAGCCCGATTCGTTAC AACAAGCCCGTGGCGAAAGTTGAACTTTCTCCTCAAAGCTCGGCTTTGTC CACTGCAGCGTTTATGGAACTGAACCCTCTCAGGCGAACGGAGTCCCCCA CCGCATCTATCCCCTTGGATCAATTGAAGTTAGTAACATACAATAAAGAG CAGGCGGCGATTGCGGCGGCAGTGGCGGCACAGCAGCAGGAGCAGATGCA GCAGGAGAGATTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC AGCAGCAGCAGCAGCAGCAGTGGGGGGCATGGCCTCAGCAACAGCGACAG CAGCAGCAGCAGTGGGGGGCATGGCCACAGCAACAACAGCAGCACCAGCC GCCGACGGAATGGGGTGCATTTGGGTCCGCTCAACCCAAACAGCAATCGC AGCAGCAACAACAACAACAACAACAACAGCAACAGCAGGAGGGGTTTGGA GACTCTTTTTGTTGGCCTCCGGCTGCAGGCCCCAGGGAAAGAGCAGCATC AGTAGGGACTGTAGCCAAGGCGCCCAACTCGGACGAATTAAACCTTTTCC TGAGTGGTGTTGGAGGAGGGAAAGAGGGGGGAGGAGGGGCGATTTTTGAC CCTGTCCGACAGAAATCTCTGGCGGAAAGTTCGTTTGATTTAAGCGTGGG AGCCTTCTTTCCTGAAGAGGCTGTGGCGAAGGAGGGAGGAAGAGCGAGGA GGAGCAGCAGCAGGATGGGGTATGGAGAGGAAGAGGAGGAAGATGAGGAG GAGGAGCCGGTGGACCACCATGATGAGGAGGACGACGGGTCAACCGGGGG GGATGGGATAGGGGGATTGGAGATGCAGGATGACCATTTTCGCCATGAGG GGGAAGGGGGGAGGGAAGGGAGGGGGGTAAACGAAGGGGCATCGGGCATG TATTATGAGGTGACGTTCACAGCGCCGACTACGTTTGGGATGTTGTTGGA GAGGAAGGATGAGTGGACCCGAGGGGCGGTTGCGAGAAGGGAGAGGACGG TGGTCACACTCGTGGTGGAGGGGGGGGAGGCAGAGGGTAAGGGGGTGGGG CTTGGGAGCATGCTTGCTTCGATAAATGGAGAAGATGTCACGGGGTTGAC TTACAAAGAGACGTTGGAGAGGATTAAGAGCCAGGCGAGGCCAATGACGG TTGTGTTTGAGCGGGAAAGCTTGAAAGAGGAGGTGTTGCAGGGATATTTT TTCGTGAGCAAGGGACCGTTTTTCTCAAACCCGACCACGATGGACAAGTG GAAGAGGAAGTACATTGTCCTCGGGGGACCGATTGCCAAAAAGAACGTCT TTCAGATTTATGATTCGAAACGGGCGTACCATAACACTGTCGTGGCCTTG TTCCAGCGCAAGCGGCCCGCGCATCGCGTGAAGACGTATGCGTTGACGTA TGCCTTCAAGCTCTCTCCATTGCAGGAACGGAAGATGGAGGGACATACCG CCCCTTTGAAATTTTTCGCATTTATGACTCCAGCGGCGAGGTTCAAGAGT ATTCGAATAGCGAGTGAGACGAGGAAGAACGTGGCGGCATTGCATGAGAG ATTCGGGCGGTTTGCAGGCAAAAGCCAGGGAGCAAGATAG back to topprotein sequence of NO01G04270.1 >NO01G04270.1-protein ID=NO01G04270.1-protein|Name=NO01G04270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=730bp MTLWTSPVPMHMTGKEVTAPRMDTLNQQERNVSTPVSAPLAAQGASAGAG RSSSSSSNNAPSQRRQTLGTVPSAAEIHQSQEKWLEFAPTSPQRRASFVS EPGAIDGNPFEIFKEPARIDSLGTQKQSFYEAGTSYSVKQHAPPLSSASS PPPSIPPPPTTTQCNTTFASSSSSLGLNSSRPASRSSNPFYEAPLSPIRY NKPVAKVELSPQSSALSTAAFMELNPLRRTESPTASIPLDQLKLVTYNKE QAAIAAAVAAQQQEQMQQERLQQQQQQQQQQQQQQQQQQQWGAWPQQQRQ QQQQWGAWPQQQQQHQPPTEWGAFGSAQPKQQSQQQQQQQQQQQQQEGFG DSFCWPPAAGPRERAASVGTVAKAPNSDELNLFLSGVGGGKEGGGGAIFD PVRQKSLAESSFDLSVGAFFPEEAVAKEGGRARRSSSRMGYGEEEEEDEE EEPVDHHDEEDDGSTGGDGIGGLEMQDDHFRHEGEGGREGRGVNEGASGM YYEVTFTAPTTFGMLLERKDEWTRGAVARRERTVVTLVVEGGEAEGKGVG LGSMLASINGEDVTGLTYKETLERIKSQARPMTVVFERESLKEEVLQGYF FVSKGPFFSNPTTMDKWKRKYIVLGGPIAKKNVFQIYDSKRAYHNTVVAL FQRKRPAHRVKTYALTYAFKLSPLQERKMEGHTAPLKFFAFMTPAARFKS IRIASETRKNVAALHERFGRFAGKSQGAR* back to topmRNA from alignment at chr1:1141884..1144073+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G04270.1 ID=NO01G04270.1|Name=NO01G04270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2190bp|location=Sequence derived from alignment at chr1:1141884..1144073+ (Nannochloropsis oceanica) ATGACGCTGTGGACCAGCCCCGTACCGATGCATATGACGGGCAAGGAGGT
CACGGCACCACGGATGGACACCCTTAACCAACAAGAAAGAAACGTCTCCA
CCCCCGTCTCGGCCCCCCTCGCCGCCCAGGGCGCTAGCGCCGGCGCTGGA
CGTAGCAGCAGTAGCTCGAGCAACAATGCACCATCGCAACGTCGCCAAAC
TCTGGGGACGGTTCCGTCGGCGGCAGAAATACACCAAAGCCAAGAGAAAT
GGCTTGAATTCGCCCCCACTTCTCCCCAACGACGTGCCTCCTTTGTCAGC
GAGCCTGGCGCAATTGATGGGAACCCCTTCGAGATCTTCAAGGAGCCCGC
ACGCATTGATAGCCTTGGCACACAAAAGCAAAGTTTCTATGAGGCAGGGA
CATCCTACTCCGTCAAACAACATGCCCCCCCCCTTTCCTCAGCCTCTTCC
CCTCCCCCCTCTATTCCGCCTCCCCCAACTACCACCCAATGCAACACCAC
TTTCGCCTCCTCCTCCTCGTCCCTTGGTCTGAACTCTTCCCGCCCAGCTT
CTCGAAGTTCCAACCCGTTCTACGAAGCTCCCCTGAGCCCGATTCGTTAC
AACAAGCCCGTGGCGAAAGTTGAACTTTCTCCTCAAAGCTCGGCTTTGTC
CACTGCAGCGTTTATGGAACTGAACCCTCTCAGGCGAACGGAGTCCCCCA
CCGCATCTATCCCCTTGGATCAATTGAAGTTAGTAACATACAATAAAGAG
CAGGCGGCGATTGCGGCGGCAGTGGCGGCACAGCAGCAGGAGCAGATGCA
GCAGGAGAGATTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGTGGGGGGCATGGCCTCAGCAACAGCGACAG
CAGCAGCAGCAGTGGGGGGCATGGCCACAGCAACAACAGCAGCACCAGCC
GCCGACGGAATGGGGTGCATTTGGGTCCGCTCAACCCAAACAGCAATCGC
AGCAGCAACAACAACAACAACAACAACAGCAACAGCAGGAGGGGTTTGGA
GACTCTTTTTGTTGGCCTCCGGCTGCAGGCCCCAGGGAAAGAGCAGCATC
AGTAGGGACTGTAGCCAAGGCGCCCAACTCGGACGAATTAAACCTTTTCC
TGAGTGGTGTTGGAGGAGGGAAAGAGGGGGGAGGAGGGGCGATTTTTGAC
CCTGTCCGACAGAAATCTCTGGCGGAAAGTTCGTTTGATTTAAGCGTGGG
AGCCTTCTTTCCTGAAGAGGCTGTGGCGAAGGAGGGAGGAAGAGCGAGGA
GGAGCAGCAGCAGGATGGGGTATGGAGAGGAAGAGGAGGAAGATGAGGAG
GAGGAGCCGGTGGACCACCATGATGAGGAGGACGACGGGTCAACCGGGGG
GGATGGGATAGGGGGATTGGAGATGCAGGATGACCATTTTCGCCATGAGG
GGGAAGGGGGGAGGGAAGGGAGGGGGGTAAACGAAGGGGCATCGGGCATG
TATTATGAGGTGACGTTCACAGCGCCGACTACGTTTGGGATGTTGTTGGA
GAGGAAGGATGAGTGGACCCGAGGGGCGGTTGCGAGAAGGGAGAGGACGG
TGGTCACACTCGTGGTGGAGGGGGGGGAGGCAGAGGGTAAGGGGGTGGGG
CTTGGGAGCATGCTTGCTTCGATAAATGGAGAAGATGTCACGGGGTTGAC
TTACAAAGAGACGTTGGAGAGGATTAAGAGCCAGGCGAGGCCAATGACGG
TTGTGTTTGAGCGGGAAAGCTTGAAAGAGGAGGTGTTGCAGGGATATTTT
TTCGTGAGCAAGGGACCGTTTTTCTCAAACCCGACCACGATGGACAAGTG
GAAGAGGAAGTACATTGTCCTCGGGGGACCGATTGCCAAAAAGAACGTCT
TTCAGATTTATGATTCGAAACGGGCGTACCATAACACTGTCGTGGCCTTG
TTCCAGCGCAAGCGGCCCGCGCATCGCGTGAAGACGTATGCGTTGACGTA
TGCCTTCAAGCTCTCTCCATTGCAGGAACGGAAGATGGAGGGACATACCG
CCCCTTTGAAATTTTTCGCATTTATGACTCCAGCGGCGAGGTTCAAGAGT
ATTCGAATAGCGAGTGAGACGAGGAAGAACGTGGCGGCATTGCATGAGAG
ATTCGGGCGGTTTGCAGGCAAAAGCCAGGGAGCAAGATAG back to topCoding sequence (CDS) from alignment at chr1:1141884..1144073+ >NO01G04270.1 ID=NO01G04270.1|Name=NO01G04270.1|organism=Nannochloropsis oceanica|type=CDS|length=2190bp|location=Sequence derived from alignment at chr1:1141884..1144073+ (Nannochloropsis oceanica) ATGACGCTGTGGACCAGCCCCGTACCGATGCATATGACGGGCAAGGAGGT CACGGCACCACGGATGGACACCCTTAACCAACAAGAAAGAAACGTCTCCA CCCCCGTCTCGGCCCCCCTCGCCGCCCAGGGCGCTAGCGCCGGCGCTGGA CGTAGCAGCAGTAGCTCGAGCAACAATGCACCATCGCAACGTCGCCAAAC TCTGGGGACGGTTCCGTCGGCGGCAGAAATACACCAAAGCCAAGAGAAAT GGCTTGAATTCGCCCCCACTTCTCCCCAACGACGTGCCTCCTTTGTCAGC GAGCCTGGCGCAATTGATGGGAACCCCTTCGAGATCTTCAAGGAGCCCGC ACGCATTGATAGCCTTGGCACACAAAAGCAAAGTTTCTATGAGGCAGGGA CATCCTACTCCGTCAAACAACATGCCCCCCCCCTTTCCTCAGCCTCTTCC CCTCCCCCCTCTATTCCGCCTCCCCCAACTACCACCCAATGCAACACCAC TTTCGCCTCCTCCTCCTCGTCCCTTGGTCTGAACTCTTCCCGCCCAGCTT CTCGAAGTTCCAACCCGTTCTACGAAGCTCCCCTGAGCCCGATTCGTTAC AACAAGCCCGTGGCGAAAGTTGAACTTTCTCCTCAAAGCTCGGCTTTGTC CACTGCAGCGTTTATGGAACTGAACCCTCTCAGGCGAACGGAGTCCCCCA CCGCATCTATCCCCTTGGATCAATTGAAGTTAGTAACATACAATAAAGAG CAGGCGGCGATTGCGGCGGCAGTGGCGGCACAGCAGCAGGAGCAGATGCA GCAGGAGAGATTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC AGCAGCAGCAGCAGCAGCAGTGGGGGGCATGGCCTCAGCAACAGCGACAG CAGCAGCAGCAGTGGGGGGCATGGCCACAGCAACAACAGCAGCACCAGCC GCCGACGGAATGGGGTGCATTTGGGTCCGCTCAACCCAAACAGCAATCGC AGCAGCAACAACAACAACAACAACAACAGCAACAGCAGGAGGGGTTTGGA GACTCTTTTTGTTGGCCTCCGGCTGCAGGCCCCAGGGAAAGAGCAGCATC AGTAGGGACTGTAGCCAAGGCGCCCAACTCGGACGAATTAAACCTTTTCC TGAGTGGTGTTGGAGGAGGGAAAGAGGGGGGAGGAGGGGCGATTTTTGAC CCTGTCCGACAGAAATCTCTGGCGGAAAGTTCGTTTGATTTAAGCGTGGG AGCCTTCTTTCCTGAAGAGGCTGTGGCGAAGGAGGGAGGAAGAGCGAGGA GGAGCAGCAGCAGGATGGGGTATGGAGAGGAAGAGGAGGAAGATGAGGAG GAGGAGCCGGTGGACCACCATGATGAGGAGGACGACGGGTCAACCGGGGG GGATGGGATAGGGGGATTGGAGATGCAGGATGACCATTTTCGCCATGAGG GGGAAGGGGGGAGGGAAGGGAGGGGGGTAAACGAAGGGGCATCGGGCATG TATTATGAGGTGACGTTCACAGCGCCGACTACGTTTGGGATGTTGTTGGA GAGGAAGGATGAGTGGACCCGAGGGGCGGTTGCGAGAAGGGAGAGGACGG TGGTCACACTCGTGGTGGAGGGGGGGGAGGCAGAGGGTAAGGGGGTGGGG CTTGGGAGCATGCTTGCTTCGATAAATGGAGAAGATGTCACGGGGTTGAC TTACAAAGAGACGTTGGAGAGGATTAAGAGCCAGGCGAGGCCAATGACGG TTGTGTTTGAGCGGGAAAGCTTGAAAGAGGAGGTGTTGCAGGGATATTTT TTCGTGAGCAAGGGACCGTTTTTCTCAAACCCGACCACGATGGACAAGTG GAAGAGGAAGTACATTGTCCTCGGGGGACCGATTGCCAAAAAGAACGTCT TTCAGATTTATGATTCGAAACGGGCGTACCATAACACTGTCGTGGCCTTG TTCCAGCGCAAGCGGCCCGCGCATCGCGTGAAGACGTATGCGTTGACGTA TGCCTTCAAGCTCTCTCCATTGCAGGAACGGAAGATGGAGGGACATACCG CCCCTTTGAAATTTTTCGCATTTATGACTCCAGCGGCGAGGTTCAAGAGT ATTCGAATAGCGAGTGAGACGAGGAAGAACGTGGCGGCATTGCATGAGAG ATTCGGGCGGTTTGCAGGCAAAAGCCAGGGAGCAAGATAG back to top
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