NO01G04110.1, NO01G04110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04110.1
Unique NameNO01G04110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2084
Alignment locationchr1:1097761..1100137 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1097761..1100137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G04110.1 vs.
Match: XP_005854118.1 (acyl-CoA synthetase [Nannochloropsis gaditana CCMP526]; EKU22239.1 acyl-CoA synthetase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1140.6 bits (2949), Expect = 0.000e+0
Identity = 535/594 (90.07%), Postives = 567/594 (95.45%), Query Frame = 0 
Query:    2 QGSFEEGDVAWFLNGRLNASVCCIDQHLPHRQDQTAILWEGDEPGDSRAITYKELYQEVCRLANAMKALGVRKGDVVMLYLPMVPEVVFAMLACARIGAPHSVVFAGFSAEALRDRINDAHSKWIMTTDEGKRGGKTLPLKSIVDKALEGAPGVRHCFMFQRTGATVGWVDGRDVKMEEVMRQQRPYCPAEPMDSEDLLFILYTSGSTGKPKGVAHTTAGYLLYAAMTHKTVFDIQEGDVYACVADCGWITGHSYIVYGPLVNGTTTVLFESIPTYPNHCRYWDLIQRHKVTQFYTAPTAIRALMRFGTEDIASFDRSSLRVLGSVGEPINPEAWKWYFEHVGESRCTIVDTWWQTETGGHLASPLPGVTPMKPGSCTLPFFGVELALVDPASGKELLGNDVEGVLCVKRPWPSVTRTVFGDHERYFTVYLKPYKGFYFTGDGARRDADGYYWITGRVDDVLNTSGHRIGTAEVESALVGHHAVSEAAVVGFPHPVKGEGICCFVTMREGVMESPELEKELKQAVRDAIGAFATPDVICGTPSLPKTRSGKIMRRILRKIASGESDSLGDISTLADPSVVTYLITAIALKVKRA 596
            QGSF EGDVAWFLNG+LNASVCCIDQHLPHRQDQ AILWEGDEPG  R+ITYKELY++VCRLANAMKA+GVR+GDVVMLYLPMVPEVV AMLACARIGAPHSVVFAGFSAEALRDRIND +SKW+MTTDEGKRGGKTLPLK IVDKAL+ AP V+HCF+F+RTGA V WV GRDVKM EVM QQRPYCPAE MDSEDLLFILYTSGSTGKPKGVAHTTAGYLL+AAMTHKTVFD+QEGDVYACVADCGWITGHSYIVYGPLVNG TT+LFESIPTYPNHCRYWDLIQRH+VTQFYTAPTAIRALMR+GTEDIASFDRSSLRVLGSVGEPINPEAWKWYFEHVG +RCTIVDTWWQTETGGHLASPLPGVTPMKPGSCTLPF+GVELAL+DP++G+EL GNDVEGVLCVKRPWPS+TRTVFGDH RY TVY++PYKG+YFTGDGARRDADGYYWITGRVDDVLNTSGHRIGTAEVESALVGH AVSEAAVVGFPH VKGEGICCFVT+REGV ESP LEKELKQAVRDAIGAFATPD++C TPSLPKTRSGKIMRR+LRKIASGESDSLGD+STLADPSVV YLITAIALKVK A
Sbjct:   14 QGSFIEGDVAWFLNGKLNASVCCIDQHLPHRQDQVAILWEGDEPGHCRSITYKELYRDVCRLANAMKAMGVRRGDVVMLYLPMVPEVVMAMLACARIGAPHSVVFAGFSAEALRDRINDTNSKWVMTTDEGKRGGKTLPLKQIVDKALKEAPSVQHCFVFERTGAPVDWVPGRDVKMSEVMAQQRPYCPAETMDSEDLLFILYTSGSTGKPKGVAHTTAGYLLFAAMTHKTVFDLQEGDVYACVADCGWITGHSYIVYGPLVNGATTLLFESIPTYPNHCRYWDLIQRHRVTQFYTAPTAIRALMRYGTEDIASFDRSSLRVLGSVGEPINPEAWKWYFEHVGNARCTIVDTWWQTETGGHLASPLPGVTPMKPGSCTLPFYGVELALIDPSTGQELAGNDVEGVLCVKRPWPSMTRTVFGDHARYLTVYMQPYKGYYFTGDGARRDADGYYWITGRVDDVLNTSGHRIGTAEVESALVGHAAVSEAAVVGFPHAVKGEGICCFVTLREGVFESPALEKELKQAVRDAIGAFATPDIVCPTPSLPKTRSGKIMRRVLRKIASGESDSLGDVSTLADPSVVPYLITAIALKVKTA 607
The following BLAST results are available for this feature:
BLAST of NO01G04110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854118.10.000e+090.07acyl-CoA synthetase [Nannochloropsis gaditana CCMP... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04110NO01G04110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04110.1NO01G04110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04110.1.cds1NO01G04110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04110.1 ID=NO01G04110.1|Name=NO01G04110.1|organism=Nannochloropsis oceanica|type=mRNA|length=2084bp
ACACTCCTACAGCTTCCACCTGCTTGCTGGGTTCGGCTGCACCCGCCTGC
CCTCCTTTCCCCCGATAAGCCATGGCGCAGATGCTGTCCCCACGGCCAGG
CGTAGAGTTGCAGGAGCACACTACCTTCAAGCCTATCGCACCCATCCACA
AATTGGCGCAGTACAAGGAGATGCACCGGCACAGTCTTGACAAACCCGAC
GAGTTCTGGCGGGAACAGGCTCACCAGTACCTCCAGTCCCTCCCTCCCAT
TTTCGTCCAACCTCACAAATAGTGGTTTTCCGATTTTGACCGCGTCATGC
AAGGTTCCTTCGAAGAAGGCGACGTGGCGTGGTTCCTGAACGGAAGGCTC
AATGCATCTGTTTGCTGTATTGATCAGCACTTGCCTCACCGTCAGGATCA
GACGGCAATTCTGTGGGAGGGGGACGAACCGGGAGATAGTCGGGCGATAA
CATACAAGGAGCTCTACCAGGAAGTGTGTCGCTTGGCTAATGCCATGAAG
GCCTTGGGAGTGCGAAAAGGAGATGTGGTCATGTTGTATTTGCCCATGGT
CCCGGAGGTGGTGTTTGCCATGCTGGCGTGTGCGAGGATTGGGGCGCCGC
ATTCGGTTGTTTTCGCGGGTTTCTCGGCGGAGGCTCTGAGGGATCGGATT
AATGATGCGCATAGTAAGTGGATCATGACGACGGACGAAGGGAAGAGGGG
GGGAAAGACCTTGCCATTGAAGTCGATCGTGGACAAGGCGTTGGAGGGGG
CGCCGGGCGTGAGGCATTGCTTCATGTTTCAACGGACGGGGGCCACGGTC
GGGTGGGTGGACGGGAGGGATGTGAAGATGGAGGAGGTGATGAGGCAGCA
ACGGCCTTATTGTCCGGCAGAGCCTATGGACAGTGAGGATCTGCTCTTTA
TTTTGTATACGAGCGGGTCGACGGGAAAGCCCAAGGGCGTGGCGCACACC
ACGGCGGGGTATTTGCTTTATGCGGCTATGACGCATAAAACAGTGTTTGA
TATCCAGGAGGGGGACGTGTATGCGTGCGTGGCGGACTGCGGGTGGATCA
CGGGGCATTCGTACATCGTGTATGGGCCACTTGTGAATGGCACGACGACG
GTGTTGTTTGAGAGCATCCCAACGTACCCGAACCACTGCCGTTACTGGGA
CTTGATCCAACGGCACAAGGTCACACAGTTCTACACTGCTCCGACGGCTA
TACGTGCGTTAATGCGCTTCGGAACCGAGGACATTGCGAGTTTCGATCGC
TCCTCCCTGCGGGTCCTGGGGAGTGTGGGCGAACCCATCAATCCGGAGGC
TTGGAAGTGGTATTTTGAACATGTCGGGGAATCGCGGTGCACGATTGTCG
ATACGTGGTGGCAGACTGAAACGGGCGGGCATCTGGCTAGTCCCTTGCCG
GGTGTCACGCCCATGAAACCAGGTTCGTGTACGTTGCCTTTTTTTGGGGT
GGAGCTCGCCTTGGTAGACCCGGCGTCGGGGAAGGAGCTGTTGGGGAATG
ACGTGGAAGGGGTATTGTGCGTCAAGAGGCCTTGGCCGTCGGTGACGAGG
ACGGTCTTTGGCGACCATGAGAGGTATTTTACTGTGTATCTGAAGCCGTA
CAAAGGCTTTTATTTCACGGGGGATGGCGCCAGGAGGGACGCGGATGGGT
ATTACTGGATTACGGGACGAGTGGACGATGTGCTTAATACGTCGGGGCAC
AGGATTGGCACTGCGGAGGTGGAGAGTGCGTTGGTGGGTCACCACGCCGT
GTCGGAGGCGGCTGTGGTGGGCTTTCCACACCCGGTGAAGGGGGAGGGGA
TTTGTTGCTTCGTGACAATGAGGGAGGGGGTGATGGAGAGCCCGGAGTTG
GAGAAGGAATTGAAGCAGGCGGTGCGGGATGCAATTGGGGCATTTGCCAC
CCCGGATGTAATTTGCGGAACACCGTCTCTGCCCAAGACACGGAGTGGAA
AGATCATGAGGAGGATTTTGAGGAAGATTGCGAGCGGGGAGAGTGATAGT
TTGGGGGACATTTCGACCTTGGCCGACCCGAGTGTGGTGACTTACTTGAT
CACCGCGATTGCGTTAAAGGTGAAGAGGGCGTAG
back to top

protein sequence of NO01G04110.1

>NO01G04110.1-protein ID=NO01G04110.1-protein|Name=NO01G04110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=596bp
MQGSFEEGDVAWFLNGRLNASVCCIDQHLPHRQDQTAILWEGDEPGDSRA
ITYKELYQEVCRLANAMKALGVRKGDVVMLYLPMVPEVVFAMLACARIGA
PHSVVFAGFSAEALRDRINDAHSKWIMTTDEGKRGGKTLPLKSIVDKALE
GAPGVRHCFMFQRTGATVGWVDGRDVKMEEVMRQQRPYCPAEPMDSEDLL
FILYTSGSTGKPKGVAHTTAGYLLYAAMTHKTVFDIQEGDVYACVADCGW
ITGHSYIVYGPLVNGTTTVLFESIPTYPNHCRYWDLIQRHKVTQFYTAPT
AIRALMRFGTEDIASFDRSSLRVLGSVGEPINPEAWKWYFEHVGESRCTI
VDTWWQTETGGHLASPLPGVTPMKPGSCTLPFFGVELALVDPASGKELLG
NDVEGVLCVKRPWPSVTRTVFGDHERYFTVYLKPYKGFYFTGDGARRDAD
GYYWITGRVDDVLNTSGHRIGTAEVESALVGHHAVSEAAVVGFPHPVKGE
GICCFVTMREGVMESPELEKELKQAVRDAIGAFATPDVICGTPSLPKTRS
GKIMRRILRKIASGESDSLGDISTLADPSVVTYLITAIALKVKRA*
back to top

mRNA from alignment at chr1:1097761..1100137-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04110.1 ID=NO01G04110.1|Name=NO01G04110.1|organism=Nannochloropsis oceanica|type=mRNA|length=2377bp|location=Sequence derived from alignment at chr1:1097761..1100137- (Nannochloropsis oceanica)
ACACTCCTACAGCTTCCACCTGCTTGCTGGGTTCGGCTGCACCCGCCTGC
CCTCCTTTCCCCCGATAAGCCATGGCGCAGATGCTGTCCCCACGGCCAGG
CGTAGAGTTGCAGGAGCACACTACCTTCAAGCCTATCGCACCCATCCACA
AATTGGCGCAGTACAAGGTACTTTGGGTGGTGCTTGTAGGGGACTCGTTA
TCGCGGATCGCGGCTGACCGTGCCCTCTTTCCTTCACATACCCCCACACG
ACAAAACCAGGAGATGCACCGGCACAGTCTTGACAAACCCGACGAGTTCT
GGCGGGAACAGGCTCACCAGTACCTCCAGGTAAGTAGAGACACTCCTTAT
TTGATGTGTGGGCTTGCAGGGTATGTGATCGCTTGTAAGAGTGAGTAGTC
GTGCGCAAGCTGAGAGAGTCGCCTCCGCGAAGGTTTATAAAGTTCAGTGA
ATATTATTAGTTAAAATCTACAGGATGTGGGGAAAAAAAGAACGTGGGGG
CGGGTATTGACACACTTAATCGCCCTCAGTCCCTCCCTCCCATTTTCGTC
CAACCTCACAAATAGTGGTTTTCCGATTTTGACCGCGTCATGCAAGGTTC
CTTCGAAGAAGGCGACGTGGCGTGGTTCCTGAACGGAAGGCTCAATGCAT
CTGTTTGCTGTATTGATCAGCACTTGCCTCACCGTCAGGATCAGACGGCA
ATTCTGTGGGAGGGGGACGAACCGGGAGATAGTCGGGCGATAACATACAA
GGAGCTCTACCAGGAAGTGTGTCGCTTGGCTAATGCCATGAAGGCCTTGG
GAGTGCGAAAAGGAGATGTGGTCATGTTGTATTTGCCCATGGTCCCGGAG
GTGGTGTTTGCCATGCTGGCGTGTGCGAGGATTGGGGCGCCGCATTCGGT
TGTTTTCGCGGGTTTCTCGGCGGAGGCTCTGAGGGATCGGATTAATGATG
CGCATAGTAAGTGGATCATGACGACGGACGAAGGGAAGAGGGGGGGAAAG
ACCTTGCCATTGAAGTCGATCGTGGACAAGGCGTTGGAGGGGGCGCCGGG
CGTGAGGCATTGCTTCATGTTTCAACGGACGGGGGCCACGGTCGGGTGGG
TGGACGGGAGGGATGTGAAGATGGAGGAGGTGATGAGGCAGCAACGGCCT
TATTGTCCGGCAGAGCCTATGGACAGTGAGGATCTGCTCTTTATTTTGTA
TACGAGCGGGTCGACGGGAAAGCCCAAGGGCGTGGCGCACACCACGGCGG
GGTATTTGCTTTATGCGGCTATGACGCATAAAACAGTGTTTGATATCCAG
GAGGGGGACGTGTATGCGTGCGTGGCGGACTGCGGGTGGATCACGGGGCA
TTCGTACATCGTGTATGGGCCACTTGTGAATGGCACGACGACGGTGTTGT
TTGAGAGCATCCCAACGTACCCGAACCACTGCCGTTACTGGGACTTGATC
CAACGGCACAAGGTCACACAGTTCTACACTGCTCCGACGGCTATACGTGC
GTTAATGCGCTTCGGAACCGAGGACATTGCGAGTTTCGATCGCTCCTCCC
TGCGGGTCCTGGGGAGTGTGGGCGAACCCATCAATCCGGAGGCTTGGAAG
TGGTATTTTGAACATGTCGGGGAATCGCGGTGCACGATTGTCGATACGTG
GTGGCAGACTGAAACGGGCGGGCATCTGGCTAGTCCCTTGCCGGGTGTCA
CGCCCATGAAACCAGGTTCGTGTACGTTGCCTTTTTTTGGGGTGGAGCTC
GCCTTGGTAGACCCGGCGTCGGGGAAGGAGCTGTTGGGGAATGACGTGGA
AGGGGTATTGTGCGTCAAGAGGCCTTGGCCGTCGGTGACGAGGACGGTCT
TTGGCGACCATGAGAGGTATTTTACTGTGTATCTGAAGCCGTACAAAGGC
TTTTATTTCACGGGGGATGGCGCCAGGAGGGACGCGGATGGGTATTACTG
GATTACGGGACGAGTGGACGATGTGCTTAATACGTCGGGGCACAGGATTG
GCACTGCGGAGGTGGAGAGTGCGTTGGTGGGTCACCACGCCGTGTCGGAG
GCGGCTGTGGTGGGCTTTCCACACCCGGTGAAGGGGGAGGGGATTTGTTG
CTTCGTGACAATGAGGGAGGGGGTGATGGAGAGCCCGGAGTTGGAGAAGG
AATTGAAGCAGGCGGTGCGGGATGCAATTGGGGCATTTGCCACCCCGGAT
GTAATTTGCGGAACACCGTCTCTGCCCAAGACACGGAGTGGAAAGATCAT
GAGGAGGATTTTGAGGAAGATTGCGAGCGGGGAGAGTGATAGTTTGGGGG
ACATTTCGACCTTGGCCGACCCGAGTGTGGTGACTTACTTGATCACCGCG
ATTGCGTTAAAGGTGAAGAGGGCGTAG
back to top

Coding sequence (CDS) from alignment at chr1:1097761..1100137-

>NO01G04110.1 ID=NO01G04110.1|Name=NO01G04110.1|organism=Nannochloropsis oceanica|type=CDS|length=1788bp|location=Sequence derived from alignment at chr1:1097761..1100137- (Nannochloropsis oceanica)
ATGCAAGGTTCCTTCGAAGAAGGCGACGTGGCGTGGTTCCTGAACGGAAG
GCTCAATGCATCTGTTTGCTGTATTGATCAGCACTTGCCTCACCGTCAGG
ATCAGACGGCAATTCTGTGGGAGGGGGACGAACCGGGAGATAGTCGGGCG
ATAACATACAAGGAGCTCTACCAGGAAGTGTGTCGCTTGGCTAATGCCAT
GAAGGCCTTGGGAGTGCGAAAAGGAGATGTGGTCATGTTGTATTTGCCCA
TGGTCCCGGAGGTGGTGTTTGCCATGCTGGCGTGTGCGAGGATTGGGGCG
CCGCATTCGGTTGTTTTCGCGGGTTTCTCGGCGGAGGCTCTGAGGGATCG
GATTAATGATGCGCATAGTAAGTGGATCATGACGACGGACGAAGGGAAGA
GGGGGGGAAAGACCTTGCCATTGAAGTCGATCGTGGACAAGGCGTTGGAG
GGGGCGCCGGGCGTGAGGCATTGCTTCATGTTTCAACGGACGGGGGCCAC
GGTCGGGTGGGTGGACGGGAGGGATGTGAAGATGGAGGAGGTGATGAGGC
AGCAACGGCCTTATTGTCCGGCAGAGCCTATGGACAGTGAGGATCTGCTC
TTTATTTTGTATACGAGCGGGTCGACGGGAAAGCCCAAGGGCGTGGCGCA
CACCACGGCGGGGTATTTGCTTTATGCGGCTATGACGCATAAAACAGTGT
TTGATATCCAGGAGGGGGACGTGTATGCGTGCGTGGCGGACTGCGGGTGG
ATCACGGGGCATTCGTACATCGTGTATGGGCCACTTGTGAATGGCACGAC
GACGGTGTTGTTTGAGAGCATCCCAACGTACCCGAACCACTGCCGTTACT
GGGACTTGATCCAACGGCACAAGGTCACACAGTTCTACACTGCTCCGACG
GCTATACGTGCGTTAATGCGCTTCGGAACCGAGGACATTGCGAGTTTCGA
TCGCTCCTCCCTGCGGGTCCTGGGGAGTGTGGGCGAACCCATCAATCCGG
AGGCTTGGAAGTGGTATTTTGAACATGTCGGGGAATCGCGGTGCACGATT
GTCGATACGTGGTGGCAGACTGAAACGGGCGGGCATCTGGCTAGTCCCTT
GCCGGGTGTCACGCCCATGAAACCAGGTTCGTGTACGTTGCCTTTTTTTG
GGGTGGAGCTCGCCTTGGTAGACCCGGCGTCGGGGAAGGAGCTGTTGGGG
AATGACGTGGAAGGGGTATTGTGCGTCAAGAGGCCTTGGCCGTCGGTGAC
GAGGACGGTCTTTGGCGACCATGAGAGGTATTTTACTGTGTATCTGAAGC
CGTACAAAGGCTTTTATTTCACGGGGGATGGCGCCAGGAGGGACGCGGAT
GGGTATTACTGGATTACGGGACGAGTGGACGATGTGCTTAATACGTCGGG
GCACAGGATTGGCACTGCGGAGGTGGAGAGTGCGTTGGTGGGTCACCACG
CCGTGTCGGAGGCGGCTGTGGTGGGCTTTCCACACCCGGTGAAGGGGGAG
GGGATTTGTTGCTTCGTGACAATGAGGGAGGGGGTGATGGAGAGCCCGGA
GTTGGAGAAGGAATTGAAGCAGGCGGTGCGGGATGCAATTGGGGCATTTG
CCACCCCGGATGTAATTTGCGGAACACCGTCTCTGCCCAAGACACGGAGT
GGAAAGATCATGAGGAGGATTTTGAGGAAGATTGCGAGCGGGGAGAGTGA
TAGTTTGGGGGACATTTCGACCTTGGCCGACCCGAGTGTGGTGACTTACT
TGATCACCGCGATTGCGTTAAAGGTGAAGAGGGCGTAG
back to top
Synonyms
Publications