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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr1 | genome | chr1:1013437..1016737 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G03770.2 vs.
Match: EWM29304.1 (transcription initiation factor iib [Nannochloropsis gaditana]) HSP 1 Score: 473.0 bits (1216), Expect = 8.800e-130 Identity = 255/364 (70.05%), Postives = 297/364 (81.59%), Query Frame = 0
Query: 27 PPSSFFFLQIKTDHRSGDVICRGCGEVQAERLVDEGAEWNRYDDNDGKGDPSRVGGELGGTASRIWGGSSASMPGAGRGGGSGGGSSKKRKAQQGAAALTGADLANKKSRAQGKLEKVCMLLSDSCRSLHLDERVAQVGFTIADSASTEGVFKGKAESVLVAAVLYLACKHCGVLKSIAEVCSELGTNKFEVGRVINDISRKVKALEAVVFSPEEVVDKYGGQLRLPLGLRAAAVDVMKTAREVEGFQGMHPQTLAGAALLLLSNTKKMPQLVV-----ADGVVK---KEEGIKSGGQREALAGTVFPPPARSVGEVTGATLVGVGTMKKAHALLYEHRERVVPLVYAAEMASHLLELSPPTEL 383
P F DHRSGDV+CRGCGEVQAERLVD GAEWNRYDDNDGKGDPSRVGGELGG ASRIWGG+SAS PG GRG G KKRK Q +A+TGA+LANKKSRAQ KLEKVCMLLSD+ RSLHLDERV QVGFT+AD+A+TEG F+GK E+ LV A+LYL+CKHCGVLKSIAEVC++LG NKF+VGRVINDISRKVK+LEAVVFSPE+VVDKYGGQLRLPLGLRAAAV+VMK A+E+ G +G+HPQ+LAGAALLLLSNTK P LV+ G++K K+E + S +AL G +FPPP RS+ +VTGATL+ GT+K+AH+LLYEHRE++VP+ YAA+M SH LEL +EL
Sbjct: 31 PCGRILFFPFPVDHRSGDVVCRGCGEVQAERLVDLGAEWNRYDDNDGKGDPSRVGGELGGVASRIWGGTSASAPG-GRGSQ---GMGKKRKGQ--GSAMTGAELANKKSRAQSKLEKVCMLLSDAVRSLHLDERVTQVGFTVADAANTEGAFRGKPENTLVGAILYLSCKHCGVLKSIAEVCAQLGLNKFDVGRVINDISRKVKSLEAVVFSPEDVVDKYGGQLRLPLGLRAAAVEVMKAAKEMPGLEGLHPQSLAGAALLLLSNTKVAPHLVLNSAAQEKGMMKIEVKDEDLAS----QALPG-LFPPPQRSLEDVTGATLMSTGTIKRAHSLLYEHREKLVPVAYAAQMFSHRLELRATSEL 383
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G03770.2 ID=NO01G03770.2|Name=NO01G03770.2|organism=Nannochloropsis oceanica|type=mRNA|length=3205bp
TTTGTCTGTGGACCCGAAATCTGAAGGCTCCCTCTGCATTGTCTTGTTTT
GGTAAGGAGTGTCACAACCACACTCCCGACATCTGCTCCACATATCCTCC
GAGTCCACCCACACCCCATACACTTCCTTGACATGTTGGTGGGAAGGACT
ATGGGTGGTGGTCTCTGTGGTATTTCTTTTGTGACGCCTCGCTCCCGCAC
CCCTCACGTCCACGTTTTCCCTCCGTTCGGGTTAGGGTTAGGCTCCATCT
CCTCCTTCCCCAACTCACACAAACCCGCACACATGCACACACCCATTACA
GCTGCTCACACCAGCGCATACGCCCGACACTGTCAGTACCGCCGCTTATT
CACAACCAACAACCGTGGCCCCGTATTATCCCCTTTTCCCTCAACTTGGC
TCTTCCACCACCACGTCCTCGTTAATATTAGCGCCATGAATCCCGAGACG
TGCACCAAGTGCAGGAGCCTCGACATAATCACAGGGATAAGATAGACAGC
ACAACAACCCACCCAGACGCGGAAACAATAACTTCGGTGCGCTTCTTCTT
GGACGGTGTAGGTGTGTGACGCAGGCTATGGGAAGAGAAAGATGAGTAGG
GGGGGAAGGCGATCCATTCGTCGTAGCCGCCCTACCTCTCTCCCTAGGCC
TCTCCCTCGCAAGCCTGCCGACCGACTCCCACTCCTCCAAAGAGAGACGC
AATCGAAAAAAATACCCCCACTCCCCCCGGCCTAGCCCGTCCCTCTCTCC
CTCTCTCGCGCAAGCGAGCGGCGGGAGCCGTGAAGACCACCAACAGATAC
AAAAGAGAAGCAAACTTCCCTCTCCCTCGTTCTCCTCCCCCTCAAACGTA
ACCCGTCAAATTGATACGATCAATCTAACCTTATTCCCTGTGTGGCATAT
TTACATCCCAACGTAACCCTTTTTCGCTCTCCGGCGTCATGCGAGAACGG
CATGCGCTGACCATCCCACCCCAGTTCCTGTGTTGGTGCCCCTGTTGGTG
CTGCTGCTCCCCTTCCTTCTGCATGCCTTGTTGTCGAGCCCAGTGCTCAT
TTTCGGAACGGGTGACCAAGCGGCTTGCAGCCCACCTTTCCTTCCACCAT
CCCACGTGATACTCAGGGGTTCAGGGCGTATTGTAATGTTATTGTTATGG
TCGTTGCAGGCGAACATTCATGTGTGTCTGTACCTCTTGCTACAAGCCCA
GCCTCTTATTTGAGCAATTCAGCAGGGACCACAAATTGTACTACAGCCGG
AAGTGTTTCCAGCAACTTTCAAAATTGATCATTTGCGGGTCATTCATGTG
AAATTCGTGACTTAACCTCGGGTCTGCAATGACGAGCAAGTTTTGTCTTG
TCTCTGTTAGCAGCCTTTCTCTCGTCCTGGACGTCGTGGTGGTTGTCGTC
GCTGCGAGAGGCTTCGTTTCAAGCGATGTGACCGGCCAGCCACCCCTTCA
CTTTGCTTGTATGTAGTAAATATACGTTTGTGGGAGTTCATTGTACGGTA
GCCAAGACGCTAGGTTCTTGGATGGAATTTGTCGTTATTGGAGCTGACCT
TTGCAGCGACGCGACGGGGATGCAGCGAGATGAGACTGAAGTTTTATTTT
GGCTTGAATGAGGCGAAGAAATCAGCTCTTGTCGACACTTTCCGCCCGCT
TGCTCCACTCGTTGGAAGATGGAGCCTCTTGTCTTGCAACAAGGGAGGGC
CTTTATCCTTTTTGTGTCGCCGTGGTTGCGGTAGTTAACGGTGTGTGCTT
TTAGATCGTGATTGTTGGCGAGACGACAGCACACTCTGCCAGTACCGTCA
TCCTCTCGCGCATGCCCCAGCTCCTGTGCTGCTGCTGCCGCAGAGCAAGG
CCTTCGATTACACCGCCGACAATTACCGCCGCCACCACTATGAAGCGAGG
GAGTCTTATAATATATTGCCAGTCTAGATGCCTTCCTTCCTCGCCCCTTT
TCCTCTTTTCCACCCGCCCTCGCTTTCAACCCCTCCACTCACCATATCCT
CGATCCCTCCCTCCTCTTTCTTCTTCCTTCAAATCAAAACAGATCACCGG
TCCGGCGACGTGATCTGCCGCGGCTGTGGAGAAGTCCAAGCTGAGCGCCT
TGTGGACGAAGGAGCCGAGTGGAACCGCTATGATGACAATGATGGAAAAG
GAGACCCTTCCCGGGTGGGGGGTGAGCTGGGAGGAACGGCCTCTCGTATA
TGGGGGGGCTCATCGGCAAGTATGCCAGGGGCAGGACGAGGGGGAGGAAG
CGGGGGAGGGAGCAGTAAGAAAAGGAAGGCGCAGCAAGGGGCGGCCGCTT
TGACGGGGGCAGATCTAGCAAATAAGAAAAGTCGGGCACAGGGGAAATTG
GAGAAGGTGTGTATGCTCTTATCGGACTCGTGCCGGTCGTTGCACTTGGA
CGAGAGGGTCGCTCAGGTTGGTTTTACAATCGCCGACAGCGCAAGCACGG
AGGGGGTCTTTAAGGGAAAGGCTGAAAGTGTATTGGTTGCGGCCGTATTA
TACTTGGCGTGCAAGCACTGTGGGGTCCTCAAGAGCATTGCCGAGGTCTG
CTCGGAGTTGGGGACGAACAAATTTGAGGTAGGGCGAGTGATCAACGATA
TCTCCCGGAAGGTCAAGGCATTGGAAGCCGTCGTTTTCTCTCCCGAGGAA
GTAGTGGATAAATATGGGGGCCAGTTGCGGCTCCCGTTGGGTTTGCGCGC
GGCGGCGGTCGATGTAATGAAAACTGCGAGGGAAGTGGAGGGGTTTCAGG
GCATGCACCCGCAAACGCTTGCGGGGGCGGCCTTGTTGTTGTTGAGCAAC
ACGAAAAAGATGCCGCAGTTGGTGGTGGCAGATGGAGTCGTAAAGAAGGA
AGAAGGGATAAAAAGCGGGGGGCAGAGGGAGGCGTTGGCCGGGACTGTTT
TCCCACCTCCTGCGCGGTCGGTGGGAGAGGTGACGGGTGCAACGCTTGTG
GGGGTAGGGACGATGAAGAAAGCGCATGCCCTTTTGTATGAGCATCGAGA
GAGGGTTGTTCCGTTGGTGTACGCGGCGGAGATGGCGAGTCATTTACTGG
AGTTGAGTCCTCCGACGGAGTTGGATTCGTAGAAAGCGAGGGAGCGAAAG
AGGTGCAGGATGTACAAAATCAAAAGGAACAGAGAAAGGAGCGAGCCGTG
TGTGTACAACTAACAAACGAAACATCGAACAAATAGACAGCGAGAAACTC
AAAGC back to topprotein sequence of NO01G03770.2 >NO01G03770.2-protein ID=NO01G03770.2-protein|Name=NO01G03770.2|organism=Nannochloropsis oceanica|type=polypeptide|length=385bp
MPSFLAPFPLFHPPSLSTPPLTISSIPPSSFFFLQIKTDHRSGDVICRGC
GEVQAERLVDEGAEWNRYDDNDGKGDPSRVGGELGGTASRIWGGSSASMP
GAGRGGGSGGGSSKKRKAQQGAAALTGADLANKKSRAQGKLEKVCMLLSD
SCRSLHLDERVAQVGFTIADSASTEGVFKGKAESVLVAAVLYLACKHCGV
LKSIAEVCSELGTNKFEVGRVINDISRKVKALEAVVFSPEEVVDKYGGQL
RLPLGLRAAAVDVMKTAREVEGFQGMHPQTLAGAALLLLSNTKKMPQLVV
ADGVVKKEEGIKSGGQREALAGTVFPPPARSVGEVTGATLVGVGTMKKAH
ALLYEHRERVVPLVYAAEMASHLLELSPPTELDS* back to topmRNA from alignment at chr1:1013437..1016737- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G03770.2 ID=NO01G03770.2|Name=NO01G03770.2|organism=Nannochloropsis oceanica|type=mRNA|length=3301bp|location=Sequence derived from alignment at chr1:1013437..1016737- (Nannochloropsis oceanica)
TTTGTCTGTGGACCCGAAATCTGAAGGCTCCCTCTGCATTGTCTTGTTTT
GGTAAGGAGTGTCACAACCACACTCCCGACATCTGCTCCACATATCCTCC
GAGTCCACCCACACCCCATACACTTCCTTGACATGTTGGTGGGAAGGACT
ATGGGTGGTGGTCTCTGTGGTATTTCTTTTGTGACGCCTCGCTCCCGCAC
CCCTCACGTCCACGTTTTCCCTCCGTTCGGGTTAGGGTTAGGCTCCATCT
CCTCCTTCCCCAACTCACACAAACCCGCACACATGCACACACCCATTACA
GCTGCTCACACCAGCGCATACGCCCGACACTGTCAGTACCGCCGCTTATT
CACAACCAACAACCGTGGCCCCGTATTATCCCCTTTTCCCTCAACTTGGC
TCTTCCACCACCACGTCCTCGTTAATATTAGCGCCATGAATCCCGAGACG
TGCACCAAGTGCAGGAGCCTCGACATAATCACAGGTTCGTTTTCTTTGTC
TCGTCATCTTGCGTCCTTGAGTTGCGGTCAGAAACCCGTTTCCCCCCTCG
AGTTCCCTCAATTCCCACCCTTCCAACCAGGGATAAGATAGACAGCACAA
CAACCCACCCAGACGCGGAAACAATAACTTCGGTGCGCTTCTTCTTGGAC
GGTGTAGGTGTGTGACGCAGGCTATGGGAAGAGAAAGATGAGTAGGGGGG
GAAGGCGATCCATTCGTCGTAGCCGCCCTACCTCTCTCCCTAGGCCTCTC
CCTCGCAAGCCTGCCGACCGACTCCCACTCCTCCAAAGAGAGACGCAATC
GAAAAAAATACCCCCACTCCCCCCGGCCTAGCCCGTCCCTCTCTCCCTCT
CTCGCGCAAGCGAGCGGCGGGAGCCGTGAAGACCACCAACAGATACAAAA
GAGAAGCAAACTTCCCTCTCCCTCGTTCTCCTCCCCCTCAAACGTAACCC
GTCAAATTGATACGATCAATCTAACCTTATTCCCTGTGTGGCATATTTAC
ATCCCAACGTAACCCTTTTTCGCTCTCCGGCGTCATGCGAGAACGGCATG
CGCTGACCATCCCACCCCAGTTCCTGTGTTGGTGCCCCTGTTGGTGCTGC
TGCTCCCCTTCCTTCTGCATGCCTTGTTGTCGAGCCCAGTGCTCATTTTC
GGAACGGGTGACCAAGCGGCTTGCAGCCCACCTTTCCTTCCACCATCCCA
CGTGATACTCAGGGGTTCAGGGCGTATTGTAATGTTATTGTTATGGTCGT
TGCAGGCGAACATTCATGTGTGTCTGTACCTCTTGCTACAAGCCCAGCCT
CTTATTTGAGCAATTCAGCAGGGACCACAAATTGTACTACAGCCGGAAGT
GTTTCCAGCAACTTTCAAAATTGATCATTTGCGGGTCATTCATGTGAAAT
TCGTGACTTAACCTCGGGTCTGCAATGACGAGCAAGTTTTGTCTTGTCTC
TGTTAGCAGCCTTTCTCTCGTCCTGGACGTCGTGGTGGTTGTCGTCGCTG
CGAGAGGCTTCGTTTCAAGCGATGTGACCGGCCAGCCACCCCTTCACTTT
GCTTGTATGTAGTAAATATACGTTTGTGGGAGTTCATTGTACGGTAGCCA
AGACGCTAGGTTCTTGGATGGAATTTGTCGTTATTGGAGCTGACCTTTGC
AGCGACGCGACGGGGATGCAGCGAGATGAGACTGAAGTTTTATTTTGGCT
TGAATGAGGCGAAGAAATCAGCTCTTGTCGACACTTTCCGCCCGCTTGCT
CCACTCGTTGGAAGATGGAGCCTCTTGTCTTGCAACAAGGGAGGGCCTTT
ATCCTTTTTGTGTCGCCGTGGTTGCGGTAGTTAACGGTGTGTGCTTTTAG
ATCGTGATTGTTGGCGAGACGACAGCACACTCTGCCAGTACCGTCATCCT
CTCGCGCATGCCCCAGCTCCTGTGCTGCTGCTGCCGCAGAGCAAGGCCTT
CGATTACACCGCCGACAATTACCGCCGCCACCACTATGAAGCGAGGGAGT
CTTATAATATATTGCCAGTCTAGATGCCTTCCTTCCTCGCCCCTTTTCCT
CTTTTCCACCCGCCCTCGCTTTCAACCCCTCCACTCACCATATCCTCGAT
CCCTCCCTCCTCTTTCTTCTTCCTTCAAATCAAAACAGATCACCGGTCCG
GCGACGTGATCTGCCGCGGCTGTGGAGAAGTCCAAGCTGAGCGCCTTGTG
GACGAAGGAGCCGAGTGGAACCGCTATGATGACAATGATGGAAAAGGAGA
CCCTTCCCGGGTGGGGGGTGAGCTGGGAGGAACGGCCTCTCGTATATGGG
GGGGCTCATCGGCAAGTATGCCAGGGGCAGGACGAGGGGGAGGAAGCGGG
GGAGGGAGCAGTAAGAAAAGGAAGGCGCAGCAAGGGGCGGCCGCTTTGAC
GGGGGCAGATCTAGCAAATAAGAAAAGTCGGGCACAGGGGAAATTGGAGA
AGGTGTGTATGCTCTTATCGGACTCGTGCCGGTCGTTGCACTTGGACGAG
AGGGTCGCTCAGGTTGGTTTTACAATCGCCGACAGCGCAAGCACGGAGGG
GGTCTTTAAGGGAAAGGCTGAAAGTGTATTGGTTGCGGCCGTATTATACT
TGGCGTGCAAGCACTGTGGGGTCCTCAAGAGCATTGCCGAGGTCTGCTCG
GAGTTGGGGACGAACAAATTTGAGGTAGGGCGAGTGATCAACGATATCTC
CCGGAAGGTCAAGGCATTGGAAGCCGTCGTTTTCTCTCCCGAGGAAGTAG
TGGATAAATATGGGGGCCAGTTGCGGCTCCCGTTGGGTTTGCGCGCGGCG
GCGGTCGATGTAATGAAAACTGCGAGGGAAGTGGAGGGGTTTCAGGGCAT
GCACCCGCAAACGCTTGCGGGGGCGGCCTTGTTGTTGTTGAGCAACACGA
AAAAGATGCCGCAGTTGGTGGTGGCAGATGGAGTCGTAAAGAAGGAAGAA
GGGATAAAAAGCGGGGGGCAGAGGGAGGCGTTGGCCGGGACTGTTTTCCC
ACCTCCTGCGCGGTCGGTGGGAGAGGTGACGGGTGCAACGCTTGTGGGGG
TAGGGACGATGAAGAAAGCGCATGCCCTTTTGTATGAGCATCGAGAGAGG
GTTGTTCCGTTGGTGTACGCGGCGGAGATGGCGAGTCATTTACTGGAGTT
GAGTCCTCCGACGGAGTTGGATTCGTAGAAAGCGAGGGAGCGAAAGAGGT
GCAGGATGTACAAAATCAAAAGGAACAGAGAAAGGAGCGAGCCGTGTGTG
TACAACTAACAAACGAAACATCGAACAAATAGACAGCGAGAAACTCAAAG
C back to topCoding sequence (CDS) from alignment at chr1:1013437..1016737- >NO01G03770.2 ID=NO01G03770.2|Name=NO01G03770.2|organism=Nannochloropsis oceanica|type=CDS|length=1155bp|location=Sequence derived from alignment at chr1:1013437..1016737- (Nannochloropsis oceanica)
ATGCCTTCCTTCCTCGCCCCTTTTCCTCTTTTCCACCCGCCCTCGCTTTC
AACCCCTCCACTCACCATATCCTCGATCCCTCCCTCCTCTTTCTTCTTCC
TTCAAATCAAAACAGATCACCGGTCCGGCGACGTGATCTGCCGCGGCTGT
GGAGAAGTCCAAGCTGAGCGCCTTGTGGACGAAGGAGCCGAGTGGAACCG
CTATGATGACAATGATGGAAAAGGAGACCCTTCCCGGGTGGGGGGTGAGC
TGGGAGGAACGGCCTCTCGTATATGGGGGGGCTCATCGGCAAGTATGCCA
GGGGCAGGACGAGGGGGAGGAAGCGGGGGAGGGAGCAGTAAGAAAAGGAA
GGCGCAGCAAGGGGCGGCCGCTTTGACGGGGGCAGATCTAGCAAATAAGA
AAAGTCGGGCACAGGGGAAATTGGAGAAGGTGTGTATGCTCTTATCGGAC
TCGTGCCGGTCGTTGCACTTGGACGAGAGGGTCGCTCAGGTTGGTTTTAC
AATCGCCGACAGCGCAAGCACGGAGGGGGTCTTTAAGGGAAAGGCTGAAA
GTGTATTGGTTGCGGCCGTATTATACTTGGCGTGCAAGCACTGTGGGGTC
CTCAAGAGCATTGCCGAGGTCTGCTCGGAGTTGGGGACGAACAAATTTGA
GGTAGGGCGAGTGATCAACGATATCTCCCGGAAGGTCAAGGCATTGGAAG
CCGTCGTTTTCTCTCCCGAGGAAGTAGTGGATAAATATGGGGGCCAGTTG
CGGCTCCCGTTGGGTTTGCGCGCGGCGGCGGTCGATGTAATGAAAACTGC
GAGGGAAGTGGAGGGGTTTCAGGGCATGCACCCGCAAACGCTTGCGGGGG
CGGCCTTGTTGTTGTTGAGCAACACGAAAAAGATGCCGCAGTTGGTGGTG
GCAGATGGAGTCGTAAAGAAGGAAGAAGGGATAAAAAGCGGGGGGCAGAG
GGAGGCGTTGGCCGGGACTGTTTTCCCACCTCCTGCGCGGTCGGTGGGAG
AGGTGACGGGTGCAACGCTTGTGGGGGTAGGGACGATGAAGAAAGCGCAT
GCCCTTTTGTATGAGCATCGAGAGAGGGTTGTTCCGTTGGTGTACGCGGC
GGAGATGGCGAGTCATTTACTGGAGTTGAGTCCTCCGACGGAGTTGGATT
CGTAG back to top
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