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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:844131..845587 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G03210.1 vs.
Match: EWM29255.1 (Acyl-CoA N-acyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 317.0 bits (811), Expect = 7.800e-83 Identity = 192/379 (50.66%), Postives = 231/379 (60.95%), Query Frame = 0
Query: 3 RGSSSVFGSLTGCLRNGNKAKKRPPSSSSA--------SFANRAVAASKKAPTQTFLDFGQKSLGKRTLCGVCGLLYVNGEAEDEKDHASFCRSISAGLVFQGWKGQRLVWGAEGKD-RVIEVRPGDGGPQLLKMGEVKRVMDQEMGFVPLVEGQSALRPTEKAFLYVHDKRVVGCLVAEKIVAAHPVLEAMPSEEWEGRETTAEELVHGAKDGRLQECGGKKACKD-HAGAENDKQEQKDQKPPPAKMHRVDDKDTTSNSNSSSSSIGRTKGKALAPPSSQFRQGRKGKEEAAASLLPKGVAYSLHDMAEATLGVKQVWVSKNSRRKGIARLMLEVARARFYYGFVVPRAKVAFSQLSNAGYSFARSYTEGGGALLVY 372
R + S FG L C + K RP ++S+ S + + A KK TQT+LD GQ+S GKRTLCG CGLLYVNG+ EDEKDH FCRS++AGLV GW+ QRLVWG EG D RVIEVRPGDG L KM EVKRVMDQEMGFVPL EG L+ TEKAFLYVH +RVVGC++AEKI AHPV +PS+E CG +K +D D + + P ++ S N + S+ GK A R K + S+LP+GV Y LH+ EA +G+KQVWVS+N RR+GIA+ MLEVARARF+YGFVVPR KVAFSQLS AGYSFAR+Y + G LLVY
Sbjct: 2 RDAMSAFGILKDCFSGRHTKKIRPAYAASSDSRVSSWTSTSKASPHAPKKTLTQTYLDLGQRSHGKRTLCGTCGLLYVNGQEEDEKDHVKFCRSVAAGLVCPGWRDQRLVWGQEGVDGRVIEVRPGDGAAPLTKMREVKRVMDQEMGFVPLREGDIVLKTTEKAFLYVHGRRVVGCVIAEKINVAHPVSGTIPSKEGS------------------HVCGMQKRSRDSRVSGIADSLHGGEGEGPEGRV------PAASGQNEHTDSMQTATGKMAASTGGVLRHADKSR--VGLSMLPQGVEY-LHEKVEAAIGIKQVWVSQNMRRQGIAKRMLEVARARFFYGFVVPRGKVAFSQLSTAGYSFARAYVK-PGKLLVY 352
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G03210.1 ID=NO01G03210.1|Name=NO01G03210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1375bp CAAAAAGTTGCAACGGCTCTTCGTCACGACGCGCTACGACCTACTCCTCA GACACCACAACATCGTATACAGGACAACCAGGGGGACCAAAAACAGCCTT GGAGCGCCAGGGTCATGCCTAGAGGCTCCTCATCCGTATTTGGCAGTCTC ACGGGTTGCCTTCGCAACGGCAATAAGGCCAAAAAGCGACCACCCTCTTC TTCCTCCGCCAGTTTCGCCAACAGAGCCGTCGCTGCCTCCAAGAAAGCTC CCACCCAAACGTTCTTGGACTTTGGGCAAAAATCCCTAGGGAAGCGCACG CTCTGTGGCGTGTGCGGCCTCCTGTACGTGAACGGTGAGGCCGAGGACGA AAAGGATCACGCCTCGTTCTGCCGGAGCATAAGCGCGGGCCTGGTTTTTC AGGGCTGGAAGGGGCAACGACTGGTGTGGGGCGCCGAGGGCAAGGACAGA GTGATTGAGGTGCGACCTGGGGACGGGGGTCCGCAGCTGCTCAAGATGGG AGAGGTGAAGCGAGTCATGGACCAAGAAATGGGTTTTGTGCCTTTGGTAG AAGGCCAGAGTGCTTTACGGCCTACGGAGAAGGCGTTTTTGTATGTGCAT GACAAACGGGTGGTGGGGTGTTTGGTCGCAGAAAAGATTGTGGCGGCGCA TCCAGTGTTGGAGGCCATGCCATCTGAGGAGTGGGAAGGGAGGGAGACGA CGGCGGAAGAGTTGGTACATGGGGCGAAAGATGGGAGGCTCCAGGAGTGT GGTGGAAAGAAGGCATGTAAGGATCATGCGGGGGCGGAGAATGACAAGCA AGAGCAGAAAGATCAAAAGCCACCACCGGCCAAGATGCATCGAGTGGACG ATAAGGACACCACCAGCAATAGCAACAGCAGCAGCAGCAGCATCGGTCGT ACAAAAGGAAAAGCACTAGCACCGCCCTCATCGCAGTTCCGACAAGGTAG AAAGGGGAAGGAGGAAGCGGCCGCCAGCCTTCTCCCTAAGGGTGTCGCCT ACTCCTTACACGACATGGCAGAGGCCACGTTAGGGGTAAAACAGGTCTGG GTCAGCAAAAACAGTCGCCGGAAAGGGATAGCGAGACTGATGCTAGAAGT GGCACGGGCTCGCTTTTACTATGGCTTTGTCGTGCCAAGAGCTAAAGTGG CATTCTCGCAGTTGAGCAATGCGGGGTATTCGTTTGCAAGGTCGTACACG GAGGGAGGGGGGGCGCTGCTTGTGTATTAGACACCGGGTAAGGAGACTGT GTGGGTTTCGATAGTGAGGAACCACTGTTATGCAAGGATTCGCACCGCCT TAATGTAGATAGTTGATAGTTAACGAGAGGGGTGGTGCACACATGCAAGG GACGACAAGTCCGCGACAGAAATTT back to topprotein sequence of NO01G03210.1 >NO01G03210.1-protein ID=NO01G03210.1-protein|Name=NO01G03210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp MPRGSSSVFGSLTGCLRNGNKAKKRPPSSSSASFANRAVAASKKAPTQTF LDFGQKSLGKRTLCGVCGLLYVNGEAEDEKDHASFCRSISAGLVFQGWKG QRLVWGAEGKDRVIEVRPGDGGPQLLKMGEVKRVMDQEMGFVPLVEGQSA LRPTEKAFLYVHDKRVVGCLVAEKIVAAHPVLEAMPSEEWEGRETTAEEL VHGAKDGRLQECGGKKACKDHAGAENDKQEQKDQKPPPAKMHRVDDKDTT SNSNSSSSSIGRTKGKALAPPSSQFRQGRKGKEEAAASLLPKGVAYSLHD MAEATLGVKQVWVSKNSRRKGIARLMLEVARARFYYGFVVPRAKVAFSQL SNAGYSFARSYTEGGGALLVY* back to topmRNA from alignment at chr1:844131..845587+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G03210.1 ID=NO01G03210.1|Name=NO01G03210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1457bp|location=Sequence derived from alignment at chr1:844131..845587+ (Nannochloropsis oceanica) CAAAAAGTTGCAACGGCTCTTCGTCACGACGCGCTACGACCTACTCCTCA
GACACCACAACATCGTATACAGGACAACCAGGGGGACCAAAAACAGCCTT
GGAGCGCCAGGGTCATGCCTAGAGGTAAGTGCCTCAAGAGATTCTCTCCT
CATCGGCCTCAATCTCATCACCCTTTCCCTCTTTTCCACCCTCATCCCCT
AATCAGGCTCCTCATCCGTATTTGGCAGTCTCACGGGTTGCCTTCGCAAC
GGCAATAAGGCCAAAAAGCGACCACCCTCTTCTTCCTCCGCCAGTTTCGC
CAACAGAGCCGTCGCTGCCTCCAAGAAAGCTCCCACCCAAACGTTCTTGG
ACTTTGGGCAAAAATCCCTAGGGAAGCGCACGCTCTGTGGCGTGTGCGGC
CTCCTGTACGTGAACGGTGAGGCCGAGGACGAAAAGGATCACGCCTCGTT
CTGCCGGAGCATAAGCGCGGGCCTGGTTTTTCAGGGCTGGAAGGGGCAAC
GACTGGTGTGGGGCGCCGAGGGCAAGGACAGAGTGATTGAGGTGCGACCT
GGGGACGGGGGTCCGCAGCTGCTCAAGATGGGAGAGGTGAAGCGAGTCAT
GGACCAAGAAATGGGTTTTGTGCCTTTGGTAGAAGGCCAGAGTGCTTTAC
GGCCTACGGAGAAGGCGTTTTTGTATGTGCATGACAAACGGGTGGTGGGG
TGTTTGGTCGCAGAAAAGATTGTGGCGGCGCATCCAGTGTTGGAGGCCAT
GCCATCTGAGGAGTGGGAAGGGAGGGAGACGACGGCGGAAGAGTTGGTAC
ATGGGGCGAAAGATGGGAGGCTCCAGGAGTGTGGTGGAAAGAAGGCATGT
AAGGATCATGCGGGGGCGGAGAATGACAAGCAAGAGCAGAAAGATCAAAA
GCCACCACCGGCCAAGATGCATCGAGTGGACGATAAGGACACCACCAGCA
ATAGCAACAGCAGCAGCAGCAGCATCGGTCGTACAAAAGGAAAAGCACTA
GCACCGCCCTCATCGCAGTTCCGACAAGGTAGAAAGGGGAAGGAGGAAGC
GGCCGCCAGCCTTCTCCCTAAGGGTGTCGCCTACTCCTTACACGACATGG
CAGAGGCCACGTTAGGGGTAAAACAGGTCTGGGTCAGCAAAAACAGTCGC
CGGAAAGGGATAGCGAGACTGATGCTAGAAGTGGCACGGGCTCGCTTTTA
CTATGGCTTTGTCGTGCCAAGAGCTAAAGTGGCATTCTCGCAGTTGAGCA
ATGCGGGGTATTCGTTTGCAAGGTCGTACACGGAGGGAGGGGGGGCGCTG
CTTGTGTATTAGACACCGGGTAAGGAGACTGTGTGGGTTTCGATAGTGAG
GAACCACTGTTATGCAAGGATTCGCACCGCCTTAATGTAGATAGTTGATA
GTTAACGAGAGGGGTGGTGCACACATGCAAGGGACGACAAGTCCGCGACA
GAAATTT back to topCoding sequence (CDS) from alignment at chr1:844131..845587+ >NO01G03210.1 ID=NO01G03210.1|Name=NO01G03210.1|organism=Nannochloropsis oceanica|type=CDS|length=1116bp|location=Sequence derived from alignment at chr1:844131..845587+ (Nannochloropsis oceanica) ATGCCTAGAGGCTCCTCATCCGTATTTGGCAGTCTCACGGGTTGCCTTCG CAACGGCAATAAGGCCAAAAAGCGACCACCCTCTTCTTCCTCCGCCAGTT TCGCCAACAGAGCCGTCGCTGCCTCCAAGAAAGCTCCCACCCAAACGTTC TTGGACTTTGGGCAAAAATCCCTAGGGAAGCGCACGCTCTGTGGCGTGTG CGGCCTCCTGTACGTGAACGGTGAGGCCGAGGACGAAAAGGATCACGCCT CGTTCTGCCGGAGCATAAGCGCGGGCCTGGTTTTTCAGGGCTGGAAGGGG CAACGACTGGTGTGGGGCGCCGAGGGCAAGGACAGAGTGATTGAGGTGCG ACCTGGGGACGGGGGTCCGCAGCTGCTCAAGATGGGAGAGGTGAAGCGAG TCATGGACCAAGAAATGGGTTTTGTGCCTTTGGTAGAAGGCCAGAGTGCT TTACGGCCTACGGAGAAGGCGTTTTTGTATGTGCATGACAAACGGGTGGT GGGGTGTTTGGTCGCAGAAAAGATTGTGGCGGCGCATCCAGTGTTGGAGG CCATGCCATCTGAGGAGTGGGAAGGGAGGGAGACGACGGCGGAAGAGTTG GTACATGGGGCGAAAGATGGGAGGCTCCAGGAGTGTGGTGGAAAGAAGGC ATGTAAGGATCATGCGGGGGCGGAGAATGACAAGCAAGAGCAGAAAGATC AAAAGCCACCACCGGCCAAGATGCATCGAGTGGACGATAAGGACACCACC AGCAATAGCAACAGCAGCAGCAGCAGCATCGGTCGTACAAAAGGAAAAGC ACTAGCACCGCCCTCATCGCAGTTCCGACAAGGTAGAAAGGGGAAGGAGG AAGCGGCCGCCAGCCTTCTCCCTAAGGGTGTCGCCTACTCCTTACACGAC ATGGCAGAGGCCACGTTAGGGGTAAAACAGGTCTGGGTCAGCAAAAACAG TCGCCGGAAAGGGATAGCGAGACTGATGCTAGAAGTGGCACGGGCTCGCT TTTACTATGGCTTTGTCGTGCCAAGAGCTAAAGTGGCATTCTCGCAGTTG AGCAATGCGGGGTATTCGTTTGCAAGGTCGTACACGGAGGGAGGGGGGGC GCTGCTTGTGTATTAG back to top
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