NO01G02660.1, NO01G02660.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G02660.1
Unique Name	NO01G02660.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3042
Alignment location	chr1:684878..688553 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:684878..688553 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO01G02660.1 vs.

BLAST of NO01G02660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G02660	NO01G02660	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G02660.1	NO01G02660.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G02660.1.cds1	NO01G02660.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G02660.1.cds2	NO01G02660.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G02660.1.cds3	NO01G02660.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G02660.1.cds4	NO01G02660.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G02660.1.cds5	NO01G02660.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:684878..688553+
coding sequence from alignment at chr1:684878..688553+

mRNA sequence

>NO01G02660.1 ID=NO01G02660.1|Name=NO01G02660.1|organism=Nannochloropsis oceanica|type=mRNA|length=3042bp
TATTTTTCTTTTTGTCATCGACTCACACGTGTTATTACAGCTGACAGATA
CAAAGTTGCCGAGTGATCCCCCTCACTCTTATCCCCTGTGATCCCGTTTC
TAACTCTTCTATACATTTTTGCGTGCTTCTTTCGCTGTCCCCCCCTCCAC
GAATTGCTCAAATGACGAAAATATTCTTCACATCCGATGGCGCAAACGAA
TCGCCCGTTCGAGGACAAGTCACCCACACCGCCCCTGACCCATCGACGGA
CAATAAATTCTCACTGATGGCCCGCTGAGAATACACACGGCCGTTCGGCA
ATACCATGGGCGGGTTCCCTCCATCCATTGCTTCCCCAGTGCACCGACAC
GTCAAATACGAATTCCCAAAATGCGCCAACGGCAAACCCACTGCCAGAGC
GCGGCCGGTTGGAGAGCACACAGGACAGTCTTGGTTATAGTGCCCTTCAT
CCTCCGCCACCATCCCTATCTCTTGACCATCGTCTTCCTCCTTCGCTTTA
GCCATGATTTCTCCCGGAGCCCCAACACGACACAGAGGGGTCTTGAGGGC
CGTCAAGCCCGCTTGAAGGCAGACCTCGAGCGTGGAATAGTCCTGGGTCA
TCCCATAACACCGCCGCGCCGCCGCCGCAAACGAATCCCCCAATTCACGC
AAGCGTTCCACAGCGAAAAGCCGCTGATACTCAGGCACGGTACAAGCCTC
CGGGTCGGCAAGCGCAAGGGTGGCCATGGCCTGCTGGACCTCCCAAAGCT
GCTCAATTGACAGACCGGGAGTATTCGTAGCTCCACCCGCACCACCAACG
GCAGCAGCAGCACTGTTGGCTGTCGGATCAAGATGCTCGCTCGCATATTC
TAGTGCCTGAATCCGGTGTCCCTTTCGCACCAGCTCCAAGAATTGTTGCT
TGTGCAGTTGAAATTCGAGGGGGCAATTCAATCGCCGTAACTTGGAGGCG
TGGTCCGCGCACCACGCCAACGCACCCATGCAATCCCGCTTTTCGACTAG
TTGTCGTTCCACTGCGCGACATTTAATGAAGATGTCCAGGTCGAACAACT
TGCCTACTCCTCCTGCTCCTGCTCCTTGTGTACTGGCCCCTTCTTTCTCC
AGCAGGCTTAGGCTCTCAAGGTAGCCCTGCCGCAGTAAATACTCGCCTAC
CAAACGCTCTAACTGTAATTTTCTTCTCAGCGTCAGTCCATGTCTTGAAG
GATATTGTGGGGGGACAATTGATAATGAAGGGGAAGCCTCTTCGTCTTTC
TGTGCAGTTGCCAATGTCTGGAGCTTCCGTTGGCATCGCTCGAATAAGTC
CTTCTCCTGCGCGTCCGCCGCCACCAAAGCCTCTCGCAGGTGGAGTAACC
GCACCCGCAGTGCATCTGTCGTGGAGTCGGGATTGTCCTGTTTCTTGAGG
AGTGTCACAATCTGCCCAAGCTCGCGCATCACCTAGGGTGGGTTGTATGG
GGATGAGGATCTTTCGTTGGACGGAGGACGGGCAACGGCATCCCGCCTTT
TACAAATAAATCAGCCATCTCAATTGATACCTGCTTGCGGACCCGCTGGA
AGTGGGAGCTAAGGGCTTCGCAGGAGATTCTGACAAGCGTGTATTCCAGA
TGAAACATGGTCTGGGCTGCTGATTATGGAGGTGCTCTCCAGGGTAAATA
GAACCAAGAAAGCCGATCAATTTTGCGCCGCCGGGCCAATTATGTGTGTC
CTATGACGCGAAGGAAACTGTGCGTGGGGCTGTGGGTGCTTTAGTGCAGG
ATGTGGAGCGTGGAGTATCCAAGCAACAAGTCGCGAAGACGCGAAAAGAA
GGCGGCCATCTCAGAGGCTCGCTTGCCTCCCTTGCTTTGGCTTGATTCCC
ACATAATACGCGCACACATGCTTCGCAAGCAAGACCATCGCTTACACCTC
TCCAGTCAATTTGTTCCTCCTTATTAATGGCGCGCCTTCCTTTCTTTCAC
TTACCCTTACGCGCGATACAAACCATAGGCACCAGAAATCGCGCATGCGA
AGGCATGAAATCTGAGCCGATGATGAACTAAGTTAGCAAGTGGATGTGGA
TAGACAAGCCTCCGTTGTCTACGACACACCAGATAAATGGGACGCAGCCA
GCTTCAATACAATCGGCGCGCTCGGGGCCGGGGCCGGGCCGGGGGCCGTG
GCCCTGCAGGGGGTCCCTCAGGGCGTGGGGGAGGGGGAGGAGGTCGAGTC
GCGTCTGCCAAGGCAAGTCAAAAAGCGGCTCTGCGGCAGCTTCCGTCGAA
TCAAGATCGTTTCCGACAAGGCGACGGTGGTGGGAGCCTCGGTGGAGAAG
GGAGACTTTTGTCGGATAGTGAAGGCGGAGATGACTTAAGGGTTTATGCA
TGGGGCACGGATTCGCAATTTGGTCATCACCACGTCCTGGCCGAGGAGGC
TGCTGACGAGGAGGCACCAGCGGACCTGCCTTCCTTGGGCCTGGATGTAA
GGGCACTAGCGGAAGGGCTGATATGCTTGCCTGCGCATGTCCGCCTCGGG
GGTGTGGACCCGGCCTTGACGGAGGGGTTGATGTTCCGGCAGGGATACCC
GCCACCGAACGAGGGCCAAACCCCAGCACCACCACCCAAGCTATTAGCTG
AGCTCGTCGGCAGTCTGACAAGCGCAAACACGGACAAGCACTTCGTGACC
GACACCACAATATCCACCGCTCCGCCTTTGCCCTCCTTGGAGCCACCGCT
CGAGGCGCTTTTGGGTCTCGAGCTGTCGTCGTCCACTATCGAAGAGGAAA
AGAAAACGGGGGGGGCAGTAAAGGCAGCTGCAACGCCCTCATCTAGTTCA
TCTGCGCTTCTTACATCCGATCTGGACGATCTCTTAAACATAAGCTTAAA
ATCACGGAAAAGCGTTGGAGATGGGATTAGTGGTGGTGACGGAAAAAAGG
CGCCCAGCAACGAGGAAGAAGTCGACGGTCCAATTTCCTCTGCTGCTTTT
TCAAGCAAGGCAAAGAAGTTGTCCGCGCTGGATGCGGGCGATTATTAAAA
GATAAAAGAAATAATCACAGAATGCATCAAAAACTCCATGTT

protein sequence of NO01G02660.1

>NO01G02660.1-protein ID=NO01G02660.1-protein|Name=NO01G02660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MGRSQLQYNRRARGRGRAGGRGPAGGPSGRGGGGGGRVASAKASQKAALR
QLPSNQDRFRQGDGGGSLGGEGRLLSDSEGGDDLRVYAWGTDSQFGHHHV
LAEEAADEEAPADLPSLGLDVRALAEGLICLPAHVRLGGVDPALTEGLMF
RQGYPPPNEGQTPAPPPKLLAELVGSLTSANTDKHFVTDTTISTAPPLPS
LEPPLEALLGLELSSSTIEEEKKTGGAVKAAATPSSSSSALLTSDLDDLL
NISLKSRKSVGDGISGGDGKKAPSNEEEVDGPISSAAFSSKAKKLSALDA
GDY*

mRNA from alignment at chr1:684878..688553+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G02660.1 ID=NO01G02660.1|Name=NO01G02660.1|organism=Nannochloropsis oceanica|type=mRNA|length=3676bp|location=Sequence derived from alignment at chr1:684878..688553+ (Nannochloropsis oceanica)
TATTTTTCTTTTTGTCATCGACTCACACGTGTTATTACAGCTGACAGATA
CAAAGTTGCCGAGTGATCCCCCTCACTCTTATCCCCTGTGATCCCGTTTC
TAACTCTTCTATACATTTTTGCGTGCTTCTTTCGCTGTCCCCCCCTCCAC
GAATTGCTCAAATGACGAAAATATTCTTCACATCCGATGGCGCAAACGAA
TCGCCCGTTCGAGGACAAGTCACCCACACCGCCCCTGACCCATCGACGGA
CAATAAATTCTCACTGATGGCCCGCTGAGAATACACACGGCCGTTCGGCA
ATACCATGGGCGGGTTCCCTCCATCCATTGCTTCCCCAGTGCACCGACAC
GTCAAATACGAATTCCCAAAATGCGCCAACGGCAAACCCACTGCCAGAGC
GCGGCCGGTTGGAGAGCACACAGGACAGTCTTGGTTATAGTGCCCTTCAT
CCTCCGCCACCATCCCTATCTCTTGACCATCGTCTTCCTCCTTCGCTTTA
GCCATGATTTCTCCCGGAGCCCCAACACGACACAGAGGGGTCTTGAGGGC
CGTCAAGCCCGCTTGAAGGCAGACCTCGAGCGTGGAATAGTCCTGGGTCA
TCCCATAACACCGCCGCGCCGCCGCCGCAAACGAATCCCCCAATTCACGC
AAGCGTTCCACAGCGAAAAGCCGCTGATACTCAGGCACGGTACAAGCCTC
CGGGTCGGCAAGCGCAAGGGTGGCCATGGCCTGCTGGACCTCCCAAAGCT
GCTCAATTGACAGACCGGGAGTATTCGTAGCTCCACCCGCACCACCAACG
GCAGCAGCAGCACTGTTGGCTGTCGGATCAAGATGCTCGCTCGCATATTC
TAGTGCCTGAATCCGGTGTCCCTTTCGCACCAGCTCCAAGAATTGTTGCT
TGTGCAGTTGAAATTCGAGGGGGCAATTCAATCGCCGTAACTTGGAGGCG
TGGTCCGCGCACCACGCCAACGCACCCATGCAATCCCGCTTTTCGACTAG
TTGTCGTTCCACTGCGCGACATTTAATGAAGATGTCCAGGTCGAACAACT
TGCCTACTCCTCCTGCTCCTGCTCCTTGTGTACTGGCCCCTTCTTTCTCC
AGCAGGCTTAGGCTCTCAAGGTAGCCCTGCCGCAGTAAATACTCGCCTAC
CAAACGCTCTAACTGTAATTTTCTTCTCAGCGTCAGTCCATGTCTTGAAG
GATATTGTGGGGGGACAATTGATAATGAAGGGGAAGCCTCTTCGTCTTTC
TGTGCAGTTGCCAATGTCTGGAGCTTCCGTTGGCATCGCTCGAATAAGTC
CTTCTCCTGCGCGTCCGCCGCCACCAAAGCCTCTCGCAGGTGGAGTAACC
GCACCCGCAGTGCATCTGTCGTGGAGTCGGGATTGTCCTGTTTCTTGAGG
AGTGTCACAATCTGCCCAAGCTCGCGCATCACCTAGGGTGGGTTGTATGG
GGATGAGGATCTTTCGTTGGACGGAGGACGGGCAACGGCATCCCGCCTTT
TACAAATAAATCAGCCATCTCAATTGATACCTGCTTGCGGACCCGCTGGA
AGTGGGAGCTAAGGGCTTCGCAGGAGATTCTGACAAGCGTGTATTCCAGA
TGAAACATGGTCTGGGCTGCTGATTATGGAGGTGCTCTCCAGGGTAAATA
GAACCAAGAAAGCCGATCAATTTTGCGCCGCCGGGCCAATTATGTGTGTC
CTATGACGCGAAGGAAACTGTGCGTGGGGCTGTGGGTGCTTTAGTGCAGG
ATGTGGAGCGTGGAGTATCCAAGCAACAAGTCGCGAAGACGCGAAAAGAA
GGCGGCCATCTCAGAGGCTCGCTTGCCTCCCTTGCTTTGGCTTGATTCCC
ACATAATACGCGCACACATGCTTCGCAAGCAAGACCATCGCTTACACCTC
TCCAGTCAATTTGTTCCTCCTTATTAATGGCGCGCCTTCCTTTCTTTCAC
TTACCCTTACGCGCGATACAAACCATAGGCACCAGAAATCGCGCATGCGA
AGGCATGAAATCTGAGCCGATGATGAACTAAGTTAGCAAGTGGATGTGGA
TAGACAAGCCTCCGTTGTCTACGACACACCAGATAAATGGGACGCAGCCA
GCTTCAATACAATCGGCGCGCTCGGGGCCGGGGCCGGGCCGGGGGCCGTG
GCCCTGCAGGGGGTCCCTCAGGGCGTGGGGGAGGGGGAGGAGGTCGAGTC
GCGTCTGCCAAGGCAAGTCAAAAAGGTATGAAGAAAAGACACCCACGAGT
GGCCATTTGTGCTATTTGTTTGGGTTTGTCAGAAAACCCATTGTACATCT
CCTCAGTGAAGTAAAGACAGGGAAGAGAGTAGTTTAAGTCAGGAAAGAGC
ATCGACATACAAACAGTAGTCTTTTCGGAACGTGGACAGATAATAATCCC
AAACCTTAAGTATTGACACGTCGTTTCCATCGTTATTCTTTGTAAATTAG
CGGCTCTGCGGCAGCTTCCGTCGAATCAAGATCGTTTCCGACAAGGCGAC
GGTGGTGGGAGCCTCGGTGGAGAAGGGAGACTTTTGTCGGATAGTGAAGG
CGGAGATGACTTAAGGGTTTATGCATGGGGGTGAGTGACACCAAAAAAGT
CCGATGTGTGATGATGTGATGCATTGTACATTTATCGGTTTTCATCTTCT
GGTTTTCCCCTCCTTGAATTGCACAAGCCTCACGCTTTAACCTGTAGTGG
TAGTTGAAACATCGCACCGCCGTTTGATTCTCTCTCTTATCTATCCGACT
GTAGCACGGATTCGCAATTTGGTCATCACCACGTCCTGGCCGAGGAGGCT
GCTGACGAGGAGGCACCAGCGGACCTGCCTTCCTTGGGCCTGGTAAGAAA
TAACATGTACATAAACTTGTTTGATTGCTTTTGCGTTTACTTCGACTGTC
AACACCCGTACAGCTTTTTTACAGCATCTTCATTTGTACTTTTCCCATCA
CTTAGGATGTAAGGGCACTAGCGGAAGGGCTGATATGCTTGCCTGCGCAT
GTCCGCCTCGGGGGTGTGGACCCGGCCTTGACGGTAGGAAGGGTTGGGCA
GGGAAGAAGAGAGCAGTCGGCACGAACCCGCAATCCATCCGTCCTTTTTA
TGTTTGCTTTTGCCATTATTATTTGCTCTTGTTCTTTTTCCTTGTGTCGA
AACAGGAGGGGTTGATGTTCCGGCAGGGATACCCGCCACCGAACGAGGGC
CAAACCCCAGCACCACCACCCAAGCTATTAGCTGAGCTCGTCGGCAGTCT
GACAAGCGCAAACACGGACAAGCACTTCGTGACCGACACCACAATATCCA
CCGCTCCGCCTTTGCCCTCCTTGGAGCCACCGCTCGAGGCGCTTTTGGGT
CTCGAGCTGTCGTCGTCCACTATCGAAGAGGAAAAGAAAACGGGGGGGGC
AGTAAAGGCAGCTGCAACGCCCTCATCTAGTTCATCTGCGCTTCTTACAT
CCGATCTGGACGATCTCTTAAACATAAGCTTAAAATCACGGAAAAGCGTT
GGAGATGGGATTAGTGGTGGTGACGGAAAAAAGGCGCCCAGCAACGAGGA
AGAAGTCGACGGTCCAATTTCCTCTGCTGCTTTTTCAAGCAAGGCAAAGA
AGTTGTCCGCGCTGGATGCGGGCGATTATTAAAAGATAAAAGAAATAATC
ACAGAATGCATCAAAAACTCCATGTT

Coding sequence (CDS) from alignment at chr1:684878..688553+

>NO01G02660.1 ID=NO01G02660.1|Name=NO01G02660.1|organism=Nannochloropsis oceanica|type=CDS|length=912bp|location=Sequence derived from alignment at chr1:684878..688553+ (Nannochloropsis oceanica)
ATGGGACGCAGCCAGCTTCAATACAATCGGCGCGCTCGGGGCCGGGGCCG
GGCCGGGGGCCGTGGCCCTGCAGGGGGTCCCTCAGGGCGTGGGGGAGGGG
GAGGAGGTCGAGTCGCGTCTGCCAAGGCAAGTCAAAAAGCGGCTCTGCGG
CAGCTTCCGTCGAATCAAGATCGTTTCCGACAAGGCGACGGTGGTGGGAG
CCTCGGTGGAGAAGGGAGACTTTTGTCGGATAGTGAAGGCGGAGATGACT
TAAGGGTTTATGCATGGGGCACGGATTCGCAATTTGGTCATCACCACGTC
CTGGCCGAGGAGGCTGCTGACGAGGAGGCACCAGCGGACCTGCCTTCCTT
GGGCCTGGATGTAAGGGCACTAGCGGAAGGGCTGATATGCTTGCCTGCGC
ATGTCCGCCTCGGGGGTGTGGACCCGGCCTTGACGGAGGGGTTGATGTTC
CGGCAGGGATACCCGCCACCGAACGAGGGCCAAACCCCAGCACCACCACC
CAAGCTATTAGCTGAGCTCGTCGGCAGTCTGACAAGCGCAAACACGGACA
AGCACTTCGTGACCGACACCACAATATCCACCGCTCCGCCTTTGCCCTCC
TTGGAGCCACCGCTCGAGGCGCTTTTGGGTCTCGAGCTGTCGTCGTCCAC
TATCGAAGAGGAAAAGAAAACGGGGGGGGCAGTAAAGGCAGCTGCAACGC
CCTCATCTAGTTCATCTGCGCTTCTTACATCCGATCTGGACGATCTCTTA
AACATAAGCTTAAAATCACGGAAAAGCGTTGGAGATGGGATTAGTGGTGG
TGACGGAAAAAAGGCGCCCAGCAACGAGGAAGAAGTCGACGGTCCAATTT
CCTCTGCTGCTTTTTCAAGCAAGGCAAAGAAGTTGTCCGCGCTGGATGCG
GGCGATTATTAA

Synonyms

Publications