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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:502528..505120 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G01990.1 vs.
Match: EWM29203.1 (heat shock protein [Nannochloropsis gaditana]) HSP 1 Score: 478.0 bits (1229), Expect = 3.300e-131 Identity = 246/389 (63.24%), Postives = 298/389 (76.61%), Query Frame = 0
Query: 12 ATSTEETRRSKRDLSPFPPSNYHDADASPARRLPPASTAADSQESELEAGLGAKQDVRQRGVPNGGVERSNSGGHAQYHPTSHHSPPGRVAVKSEREMLALLSFEWALMKRGILPSKSPLFFLILWIFVEYVHLIAHNYVYYLQGKLWGADGPPPPLQDLGLMLLADRLPESFEWIIGFATALLCGLMFSLGLLRLTLTNVNWGGPTIDVKTSDGRVKTTLPMPVCLVMRRACQAMSVGMTLRIITFLVTLIPNPAEYCHGSSWDPPAHVGEIFSRVRFTGSCGDLMFSGHTSHGMVLMLVVCKFAPNLRAAKVLAVGSMTLLAASLLAFKAHYSSDVLVAIYVNIMIWWLLPRDAASIKLADLQLDDHLPLPPTPTFLSVPPLSAAAS 401
A S EE R R+ SP PP+ Y D +A P A TA S+ +LEAG+ +KQD RQR G + G SH + V +KSEREM LLSFEWAL+K+G+ S+ PLFF +LW+FVEYVHL AHNYVY+LQGK+WG DGPPPPL DLGLMLLADRLP+ +EWIIGFATA+L GLMFSLGLLRLTL +V WGGP I+V+ +D + KTTLPMPV LVM+RACQAMSVGM+LR++TFLVTL+PNPA YCHG WDPP VGEIF+R+RFTGSCGDL+FSGHTSHGMVLMLVV ++AP +RAAK L++G+MTLLA SLLAFK+HY+SDVLVA+YVN+MIWWLLP D A + L DL L++ PLP +P F+ P S++ +
Sbjct: 75 AVSREEELR--REASP-PPAAYEDDNALSEPASPAARTARGSRGVDLEAGMNSKQDARQRTFLRG--LETGQGSTGSQIGASHAA--SCVGLKSEREMRNLLSFEWALLKKGVPSSRPPLFFFLLWVFVEYVHLTAHNYVYFLQGKIWGVDGPPPPLPDLGLMLLADRLPDRYEWIIGFATAVLVGLMFSLGLLRLTLAHVKWGGPQIEVRDADNQHKTTLPMPVSLVMQRACQAMSVGMSLRVVTFLVTLVPNPAAYCHGPDWDPPERVGEIFTRIRFTGSCGDLLFSGHTSHGMVLMLVVTRYAPKVRAAKALSIGAMTLLALSLLAFKSHYTSDVLVAVYVNLMIWWLLPTDPARVNLTDLGLNNDFPLPVSPAFVCADPSSSSVT 456
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G01990.1 ID=NO01G01990.1|Name=NO01G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2593bp TTTTTTTGCCTCTCATTTTGCGTGTGTCCGAAAGGGGCTTGGACACTGAC GAACCGACACATCTTGTGTTTTTCCTGGAGACGTACGTGCAGTGATGCTT TCTACCCTGCTTGGCAATTTGATGACACCAGCAAAGCATCGTGCCCGCGA CAACCATGCTATCCAGCTTTCCAGACTACTTGGGCGGTGAGTGTCATAAA GCCAAGTGAGGCTGCCGTGGTCTAAGCCCCTTTGTCGGCATCCGGACCTA CGGGTTCAACATTGCCAGCAGGCAGCCTTCTCCTTTTCATCAACACTTCC CCGTGAGGCTTGGCATGGCTGCGTCCTGATACGTTTATATCTCGTCACCA GCATTGATCATCCTTGCCACCCACCACACAGGTCAGTCCTTCGCCCGACC ATAAAAGGCGGGACGGGGGGGACCCGGCAACCACGCATTCTTGGCAGCAT CAACAGCTTGTTTAGTTGGTGGTGCCATAGTGAGAGGGACGCGGCAAGAT AAAAATTTGCAGCGGGACACCGCTGTCGCGGTGGAAAGAGGAGGATTAGC AGCACCGATAGCAGTGGCCTCAATTTTGACTACCATCTTCTCATGGAAGA GGACGAGGACGGGACCAGCACTCCGGCAACCTCCACTGAAGAAACACGCC GAAGCAAGCGCGACCTATCACCATTTCCCCCATCCAACTACCATGACGCC GATGCCTCGCCCGCGCGCCGCCTCCCACCAGCCAGCACCGCCGCAGACAG TCAAGAGAGCGAGCTGGAAGCAGGCTTGGGCGCAAAGCAAGATGTGCGAC AACGCGGCGTGCCCAATGGCGGTGTGGAGAGAAGCAATTCCGGCGGCCAC GCCCAGTATCATCCCACCTCCCACCACTCCCCCCCCGGGCGCGTCGCCGT CAAATCCGAACGTGAAATGCTCGCCTTGCTCTCCTTTGAGTGGGCACTGA TGAAACGTGGCATTCTTCCGTCGAAATCCCCGCTCTTCTTCCTCATCCTC TGGATTTTTGTCGAGTACGTCCATCTAATTGCCCACAACTACGTCTATTA CCTTCAAGGTAAACTCTGGGGTGCTGATGGCCCCCCTCCCCCGTTGCAAG ATTTGGGTTTGATGCTCCTTGCTGACCGGTTGCCGGAGAGCTTTGAATGG ATCATTGGCTTTGCGACTGCGTTGTTGTGTGGGCTGATGTTCTCCCTGGG CCTTCTCCGGCTTACACTCACTAACGTCAACTGGGGGGGGCCTACGATCG ATGTCAAAACGAGCGATGGCCGGGTCAAGACAACACTACCTATGCCTGTC TGCTTAGTAATGCGGCGTGCGTGTCAAGCAATGAGCGTGGGAATGACTTT AAGAATAATTACCTTTCTGGTTACACTAATTCCTAACCCTGCGGAGTACT GTCATGGGAGCAGCTGGGACCCTCCTGCACATGTTGGGGAGATATTTTCG CGAGTTAGGTTTACGGGAAGCTGTGGGGATTTGATGTTTTCGGGGCACAC CTCTCATGGGATGGTGTTGATGCTTGTTGTTTGTAAGTTTGCCCCCAATC TGAGGGCCGCGAAGGTCTTGGCGGTTGGATCGATGACGTTGCTAGCGGCG TCGTTGCTTGCATTCAAGGCGCATTATTCCTCCGACGTTCTCGTAGCAAT CTATGTTAACATCATGATTTGGTGGCTGTTGCCACGGGATGCGGCGAGTA TCAAACTCGCCGATTTGCAGTTAGATGACCATTTGCCCTTGCCCCCGACG CCCACGTTTTTGTCGGTGCCGCCGCTGTCAGCTGCAGCTTCGCTTTCGGG TGTGGGGGAATTGAATACTCCGAATTCTTCGACGTTGTCCTTGTGTAGGG ATAGGGAAGCAGGGGGTGCAGGAGGAGGACAAGAAGCGGGAAAGGGTGAA GGGACTTCAAGAAGAGGCAGGAGAAGGGAGGGGGAGGGACAGCCACCAGC AGCAATTGTGCAACAGGAGGAAGAAGCGGTGCGGAGGCTGGAGGGGGGAT GCGTGTGAATGAAGTAAGGGATGAAGGCAGAGACGGACTGTTGATGTATG TAAGAGGGAATTTGAAAATTAGGATATGAAAATGAGAGAATTTATGTATA CAGAGGGGAAAATCATTTTGGACGGGCACAAATTAAAAAAAATTTAAGAG ATAGAGAAAGCGAGAGAGATAAAATGAGGGCACCGATGCCGACAGTTTCT TTGGATGACAGAAGTAGAGATGTGTGTGCGTGTGTGCGTGTGTGCGAGTG TGTCGGTTGGGTCTGTCAGTCTGTTTCTTTGGATACCCCTTTGCCCCGCA TTGTTTTTGGTGCTCCTAAGATTGAGATTTCCACAATATCGAGCTTCTAC ACAATGTCAACGACATTGACGACCACAACAATGACGACGACACACATATA CACGCGTACACTGACACACATACATTCACACACGACACAAGAAAAGGGGG AACGATAAGTAGACGTGGGTGCACGTACAATGATTGATTCGGATGGATAT AATTCGCATGTGTGGCATTCCCTTTTCCTTCGTCTTTCTCTTTCCCCTCG GCAGACTTCTGAAGAAGTATACCTAAACGAATTCTGTTTTTCA back to topprotein sequence of NO01G01990.1 >NO01G01990.1-protein ID=NO01G01990.1-protein|Name=NO01G01990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp MEEDEDGTSTPATSTEETRRSKRDLSPFPPSNYHDADASPARRLPPASTA ADSQESELEAGLGAKQDVRQRGVPNGGVERSNSGGHAQYHPTSHHSPPGR VAVKSEREMLALLSFEWALMKRGILPSKSPLFFLILWIFVEYVHLIAHNY VYYLQGKLWGADGPPPPLQDLGLMLLADRLPESFEWIIGFATALLCGLMF SLGLLRLTLTNVNWGGPTIDVKTSDGRVKTTLPMPVCLVMRRACQAMSVG MTLRIITFLVTLIPNPAEYCHGSSWDPPAHVGEIFSRVRFTGSCGDLMFS GHTSHGMVLMLVVCKFAPNLRAAKVLAVGSMTLLAASLLAFKAHYSSDVL VAIYVNIMIWWLLPRDAASIKLADLQLDDHLPLPPTPTFLSVPPLSAAAS LSGVGELNTPNSSTLSLCRDREAGGAGGGQEAGKGEGTSRRGRRREGEGQ PPAAIVQQEEEAVRRLEGGCV* back to topmRNA from alignment at chr1:502528..505120+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G01990.1 ID=NO01G01990.1|Name=NO01G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2593bp|location=Sequence derived from alignment at chr1:502528..505120+ (Nannochloropsis oceanica) TTTTTTTGCCTCTCATTTTGCGTGTGTCCGAAAGGGGCTTGGACACTGAC
GAACCGACACATCTTGTGTTTTTCCTGGAGACGTACGTGCAGTGATGCTT
TCTACCCTGCTTGGCAATTTGATGACACCAGCAAAGCATCGTGCCCGCGA
CAACCATGCTATCCAGCTTTCCAGACTACTTGGGCGGTGAGTGTCATAAA
GCCAAGTGAGGCTGCCGTGGTCTAAGCCCCTTTGTCGGCATCCGGACCTA
CGGGTTCAACATTGCCAGCAGGCAGCCTTCTCCTTTTCATCAACACTTCC
CCGTGAGGCTTGGCATGGCTGCGTCCTGATACGTTTATATCTCGTCACCA
GCATTGATCATCCTTGCCACCCACCACACAGGTCAGTCCTTCGCCCGACC
ATAAAAGGCGGGACGGGGGGGACCCGGCAACCACGCATTCTTGGCAGCAT
CAACAGCTTGTTTAGTTGGTGGTGCCATAGTGAGAGGGACGCGGCAAGAT
AAAAATTTGCAGCGGGACACCGCTGTCGCGGTGGAAAGAGGAGGATTAGC
AGCACCGATAGCAGTGGCCTCAATTTTGACTACCATCTTCTCATGGAAGA
GGACGAGGACGGGACCAGCACTCCGGCAACCTCCACTGAAGAAACACGCC
GAAGCAAGCGCGACCTATCACCATTTCCCCCATCCAACTACCATGACGCC
GATGCCTCGCCCGCGCGCCGCCTCCCACCAGCCAGCACCGCCGCAGACAG
TCAAGAGAGCGAGCTGGAAGCAGGCTTGGGCGCAAAGCAAGATGTGCGAC
AACGCGGCGTGCCCAATGGCGGTGTGGAGAGAAGCAATTCCGGCGGCCAC
GCCCAGTATCATCCCACCTCCCACCACTCCCCCCCCGGGCGCGTCGCCGT
CAAATCCGAACGTGAAATGCTCGCCTTGCTCTCCTTTGAGTGGGCACTGA
TGAAACGTGGCATTCTTCCGTCGAAATCCCCGCTCTTCTTCCTCATCCTC
TGGATTTTTGTCGAGTACGTCCATCTAATTGCCCACAACTACGTCTATTA
CCTTCAAGGTAAACTCTGGGGTGCTGATGGCCCCCCTCCCCCGTTGCAAG
ATTTGGGTTTGATGCTCCTTGCTGACCGGTTGCCGGAGAGCTTTGAATGG
ATCATTGGCTTTGCGACTGCGTTGTTGTGTGGGCTGATGTTCTCCCTGGG
CCTTCTCCGGCTTACACTCACTAACGTCAACTGGGGGGGGCCTACGATCG
ATGTCAAAACGAGCGATGGCCGGGTCAAGACAACACTACCTATGCCTGTC
TGCTTAGTAATGCGGCGTGCGTGTCAAGCAATGAGCGTGGGAATGACTTT
AAGAATAATTACCTTTCTGGTTACACTAATTCCTAACCCTGCGGAGTACT
GTCATGGGAGCAGCTGGGACCCTCCTGCACATGTTGGGGAGATATTTTCG
CGAGTTAGGTTTACGGGAAGCTGTGGGGATTTGATGTTTTCGGGGCACAC
CTCTCATGGGATGGTGTTGATGCTTGTTGTTTGTAAGTTTGCCCCCAATC
TGAGGGCCGCGAAGGTCTTGGCGGTTGGATCGATGACGTTGCTAGCGGCG
TCGTTGCTTGCATTCAAGGCGCATTATTCCTCCGACGTTCTCGTAGCAAT
CTATGTTAACATCATGATTTGGTGGCTGTTGCCACGGGATGCGGCGAGTA
TCAAACTCGCCGATTTGCAGTTAGATGACCATTTGCCCTTGCCCCCGACG
CCCACGTTTTTGTCGGTGCCGCCGCTGTCAGCTGCAGCTTCGCTTTCGGG
TGTGGGGGAATTGAATACTCCGAATTCTTCGACGTTGTCCTTGTGTAGGG
ATAGGGAAGCAGGGGGTGCAGGAGGAGGACAAGAAGCGGGAAAGGGTGAA
GGGACTTCAAGAAGAGGCAGGAGAAGGGAGGGGGAGGGACAGCCACCAGC
AGCAATTGTGCAACAGGAGGAAGAAGCGGTGCGGAGGCTGGAGGGGGGAT
GCGTGTGAATGAAGTAAGGGATGAAGGCAGAGACGGACTGTTGATGTATG
TAAGAGGGAATTTGAAAATTAGGATATGAAAATGAGAGAATTTATGTATA
CAGAGGGGAAAATCATTTTGGACGGGCACAAATTAAAAAAAATTTAAGAG
ATAGAGAAAGCGAGAGAGATAAAATGAGGGCACCGATGCCGACAGTTTCT
TTGGATGACAGAAGTAGAGATGTGTGTGCGTGTGTGCGTGTGTGCGAGTG
TGTCGGTTGGGTCTGTCAGTCTGTTTCTTTGGATACCCCTTTGCCCCGCA
TTGTTTTTGGTGCTCCTAAGATTGAGATTTCCACAATATCGAGCTTCTAC
ACAATGTCAACGACATTGACGACCACAACAATGACGACGACACACATATA
CACGCGTACACTGACACACATACATTCACACACGACACAAGAAAAGGGGG
AACGATAAGTAGACGTGGGTGCACGTACAATGATTGATTCGGATGGATAT
AATTCGCATGTGTGGCATTCCCTTTTCCTTCGTCTTTCTCTTTCCCCTCG
GCAGACTTCTGAAGAAGTATACCTAAACGAATTCTGTTTTTCA back to topCoding sequence (CDS) from alignment at chr1:502528..505120+ >NO01G01990.1 ID=NO01G01990.1|Name=NO01G01990.1|organism=Nannochloropsis oceanica|type=CDS|length=1416bp|location=Sequence derived from alignment at chr1:502528..505120+ (Nannochloropsis oceanica) ATGGAAGAGGACGAGGACGGGACCAGCACTCCGGCAACCTCCACTGAAGA AACACGCCGAAGCAAGCGCGACCTATCACCATTTCCCCCATCCAACTACC ATGACGCCGATGCCTCGCCCGCGCGCCGCCTCCCACCAGCCAGCACCGCC GCAGACAGTCAAGAGAGCGAGCTGGAAGCAGGCTTGGGCGCAAAGCAAGA TGTGCGACAACGCGGCGTGCCCAATGGCGGTGTGGAGAGAAGCAATTCCG GCGGCCACGCCCAGTATCATCCCACCTCCCACCACTCCCCCCCCGGGCGC GTCGCCGTCAAATCCGAACGTGAAATGCTCGCCTTGCTCTCCTTTGAGTG GGCACTGATGAAACGTGGCATTCTTCCGTCGAAATCCCCGCTCTTCTTCC TCATCCTCTGGATTTTTGTCGAGTACGTCCATCTAATTGCCCACAACTAC GTCTATTACCTTCAAGGTAAACTCTGGGGTGCTGATGGCCCCCCTCCCCC GTTGCAAGATTTGGGTTTGATGCTCCTTGCTGACCGGTTGCCGGAGAGCT TTGAATGGATCATTGGCTTTGCGACTGCGTTGTTGTGTGGGCTGATGTTC TCCCTGGGCCTTCTCCGGCTTACACTCACTAACGTCAACTGGGGGGGGCC TACGATCGATGTCAAAACGAGCGATGGCCGGGTCAAGACAACACTACCTA TGCCTGTCTGCTTAGTAATGCGGCGTGCGTGTCAAGCAATGAGCGTGGGA ATGACTTTAAGAATAATTACCTTTCTGGTTACACTAATTCCTAACCCTGC GGAGTACTGTCATGGGAGCAGCTGGGACCCTCCTGCACATGTTGGGGAGA TATTTTCGCGAGTTAGGTTTACGGGAAGCTGTGGGGATTTGATGTTTTCG GGGCACACCTCTCATGGGATGGTGTTGATGCTTGTTGTTTGTAAGTTTGC CCCCAATCTGAGGGCCGCGAAGGTCTTGGCGGTTGGATCGATGACGTTGC TAGCGGCGTCGTTGCTTGCATTCAAGGCGCATTATTCCTCCGACGTTCTC GTAGCAATCTATGTTAACATCATGATTTGGTGGCTGTTGCCACGGGATGC GGCGAGTATCAAACTCGCCGATTTGCAGTTAGATGACCATTTGCCCTTGC CCCCGACGCCCACGTTTTTGTCGGTGCCGCCGCTGTCAGCTGCAGCTTCG CTTTCGGGTGTGGGGGAATTGAATACTCCGAATTCTTCGACGTTGTCCTT GTGTAGGGATAGGGAAGCAGGGGGTGCAGGAGGAGGACAAGAAGCGGGAA AGGGTGAAGGGACTTCAAGAAGAGGCAGGAGAAGGGAGGGGGAGGGACAG CCACCAGCAGCAATTGTGCAACAGGAGGAAGAAGCGGTGCGGAGGCTGGA GGGGGGATGCGTGTGA back to top
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