NO01G01580.1, NO01G01580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01580.1
Unique NameNO01G01580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1239
Alignment locationchr1:398833..400071 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:398833..400071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01580.1 vs.
Match: EWM29059.1 (cysteine synthase [Nannochloropsis gaditana])

HSP 1 Score: 551.2 bits (1419), Expect = 2.700e-153
Identity = 279/394 (70.81%), Postives = 326/394 (82.74%), Query Frame = 0 
Query:   16 LLLATAIFASASTVATILLLPALRRRRSPPPGTQ-EESNGGYAALIGNTPLVELQSLSKATGCRILAKAEYLNPGGTSKDRVALRMIQEAERAGLLKPGGTVVEGTSGSTGIALASLCRARGYRCLIVMPDDQAAEKVRLLQQYGAEVEVVKPAGIANPNHYYNRARTRAQELSQMGKNAIFMDQFETMANFHTHYHGTGPELWRQLEEGFGLSPDAFVMSAGTGGTIAGVSRSWKEMRGKKVVKVYLVDPPGSALFNKVKFGVCYASEQKERGVRRHRYDSLAEGIGLDRVTANFQEARVDDAFRVTDQEAVDMAHFLLQREGLFVGSSTAMNVVGAVRAAWELGRGHTVVTVLCDSGQRHLTRFWSREWVEGEEKGVRWPERPWTDLRFLKR 409
            L++ +A+ ASA+T A +L+    R +     G +      GYAALIGNTPL+EL SLS+AT CR+LAK EYLNPGGTSKDRVALRMIQEAE+A LL PG TV+EGTSGSTGIALASLCRARGYRCLIVMPDDQAAEK  LL+Q+GAEVE+VKPA IANPNHY NRAR RA+EL   G  A+FMDQFETMANF  HY GTGPE+W Q+  G+G  PDAFVMSAGTGGT+AGVSR+WKE   K  V+V+LVDPPGS+L++KVK GVCY++ Q+ERGVRRHRYDSLAEGIG+DR+TANF +AR+D+AF V+DQEAVDMAHFLLQ EG+FVGSSTA+N+VG VRAA  LG GHTVVTVLCDSGQRHLTRFW+R  VEG E  ++WPE P  +L FL++
Sbjct:   20 LVVVSAVAASATTAAILLVFSQRRSKFKRTLGNKCGNRESGYAALIGNTPLIELTSLSRATECRVLAKVEYLNPGGTSKDRVALRMIQEAEKACLLHPGSTVIEGTSGSTGIALASLCRARGYRCLIVMPDDQAAEKAHLLKQFGAEVEIVKPASIANPNHYCNRARARAEEL---GDEAVFMDQFETMANFRAHYEGTGPEMWEQVVAGYGARPDAFVMSAGTGGTLAGVSRAWKEREEK--VQVFLVDPPGSSLYHKVKHGVCYSTAQRERGVRRHRYDSLAEGIGVDRLTANFGKARIDEAFHVSDQEAVDMAHFLLQAEGIFVGSSTAINLVGCVRAARVLGPGHTVVTVLCDSGQRHLTRFWNRRVVEGAE--LKWPETPPVNLNFLQK 406
The following BLAST results are available for this feature:
BLAST of NO01G01580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29059.12.700e-15370.81cysteine synthase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01580NO01G01580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01580.1NO01G01580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01580.1.cds1NO01G01580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01580.1 ID=NO01G01580.1|Name=NO01G01580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1239bp
ATGGCACCCGCTAGCAGCGGCAATCGCAGCGCGTCGTCCTTATCCCTTCT
GCTTGCCACTGCTATCTTTGCCTCCGCTTCAACTGTTGCTACCATTCTCC
TTCTTCCAGCTCTCCGTCGACGCCGTTCTCCGCCTCCCGGCACTCAGGAA
GAGAGTAATGGTGGCTATGCCGCCCTGATTGGCAATACCCCACTCGTTGA
GCTGCAGAGTCTGTCGAAAGCTACTGGGTGTCGTATCCTGGCTAAGGCTG
AGTACCTGAACCCTGGCGGTACAAGCAAGGACCGAGTGGCCTTGCGCATG
ATTCAAGAAGCGGAACGCGCCGGCTTGCTCAAGCCTGGGGGCACGGTGGT
GGAAGGCACGTCCGGGAGTACTGGTATTGCGTTAGCATCCTTGTGTCGGG
CGCGGGGGTACCGGTGCTTGATAGTCATGCCTGACGATCAGGCCGCGGAA
AAAGTGCGTTTACTCCAACAATACGGTGCCGAGGTCGAGGTGGTTAAACC
TGCCGGGATCGCCAACCCCAACCATTACTACAACCGTGCCCGGACCCGAG
CACAAGAACTTTCGCAGATGGGAAAAAATGCTATTTTTATGGATCAGTTT
GAAACAATGGCGAATTTTCATACGCATTACCATGGGACAGGCCCGGAATT
ATGGAGGCAGCTGGAGGAGGGGTTTGGATTGAGCCCGGATGCCTTTGTAA
TGTCGGCGGGGACGGGAGGGACGATTGCGGGTGTGAGTAGGTCATGGAAA
GAGATGAGAGGCAAGAAGGTGGTGAAGGTGTATTTGGTGGATCCGCCCGG
GTCGGCGCTGTTTAATAAGGTAAAGTTTGGGGTGTGTTATGCGAGTGAAC
AGAAGGAGAGGGGGGTGAGGAGGCACCGATATGATAGCTTGGCGGAAGGG
ATTGGTCTGGATAGGGTGACGGCGAACTTTCAAGAGGCGAGGGTTGATGA
TGCCTTTCGAGTGACAGATCAGGAGGCTGTCGACATGGCGCATTTTTTAC
TGCAGCGGGAGGGATTGTTTGTAGGGAGTTCAACCGCGATGAATGTGGTG
GGGGCCGTAAGGGCGGCCTGGGAATTGGGGAGGGGGCACACGGTGGTGAC
AGTGTTGTGCGATTCGGGTCAGAGACATTTGACGAGATTTTGGAGTCGGG
AATGGGTGGAGGGGGAGGAGAAGGGAGTGCGATGGCCTGAGAGGCCCTGG
ACGGACTTGAGGTTTTTAAAGAGAGTGGAGACGGAGTAG
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protein sequence of NO01G01580.1

>NO01G01580.1-protein ID=NO01G01580.1-protein|Name=NO01G01580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MAPASSGNRSASSLSLLLATAIFASASTVATILLLPALRRRRSPPPGTQE
ESNGGYAALIGNTPLVELQSLSKATGCRILAKAEYLNPGGTSKDRVALRM
IQEAERAGLLKPGGTVVEGTSGSTGIALASLCRARGYRCLIVMPDDQAAE
KVRLLQQYGAEVEVVKPAGIANPNHYYNRARTRAQELSQMGKNAIFMDQF
ETMANFHTHYHGTGPELWRQLEEGFGLSPDAFVMSAGTGGTIAGVSRSWK
EMRGKKVVKVYLVDPPGSALFNKVKFGVCYASEQKERGVRRHRYDSLAEG
IGLDRVTANFQEARVDDAFRVTDQEAVDMAHFLLQREGLFVGSSTAMNVV
GAVRAAWELGRGHTVVTVLCDSGQRHLTRFWSREWVEGEEKGVRWPERPW
TDLRFLKRVETE*
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mRNA from alignment at chr1:398833..400071+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01580.1 ID=NO01G01580.1|Name=NO01G01580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1239bp|location=Sequence derived from alignment at chr1:398833..400071+ (Nannochloropsis oceanica)
ATGGCACCCGCTAGCAGCGGCAATCGCAGCGCGTCGTCCTTATCCCTTCT
GCTTGCCACTGCTATCTTTGCCTCCGCTTCAACTGTTGCTACCATTCTCC
TTCTTCCAGCTCTCCGTCGACGCCGTTCTCCGCCTCCCGGCACTCAGGAA
GAGAGTAATGGTGGCTATGCCGCCCTGATTGGCAATACCCCACTCGTTGA
GCTGCAGAGTCTGTCGAAAGCTACTGGGTGTCGTATCCTGGCTAAGGCTG
AGTACCTGAACCCTGGCGGTACAAGCAAGGACCGAGTGGCCTTGCGCATG
ATTCAAGAAGCGGAACGCGCCGGCTTGCTCAAGCCTGGGGGCACGGTGGT
GGAAGGCACGTCCGGGAGTACTGGTATTGCGTTAGCATCCTTGTGTCGGG
CGCGGGGGTACCGGTGCTTGATAGTCATGCCTGACGATCAGGCCGCGGAA
AAAGTGCGTTTACTCCAACAATACGGTGCCGAGGTCGAGGTGGTTAAACC
TGCCGGGATCGCCAACCCCAACCATTACTACAACCGTGCCCGGACCCGAG
CACAAGAACTTTCGCAGATGGGAAAAAATGCTATTTTTATGGATCAGTTT
GAAACAATGGCGAATTTTCATACGCATTACCATGGGACAGGCCCGGAATT
ATGGAGGCAGCTGGAGGAGGGGTTTGGATTGAGCCCGGATGCCTTTGTAA
TGTCGGCGGGGACGGGAGGGACGATTGCGGGTGTGAGTAGGTCATGGAAA
GAGATGAGAGGCAAGAAGGTGGTGAAGGTGTATTTGGTGGATCCGCCCGG
GTCGGCGCTGTTTAATAAGGTAAAGTTTGGGGTGTGTTATGCGAGTGAAC
AGAAGGAGAGGGGGGTGAGGAGGCACCGATATGATAGCTTGGCGGAAGGG
ATTGGTCTGGATAGGGTGACGGCGAACTTTCAAGAGGCGAGGGTTGATGA
TGCCTTTCGAGTGACAGATCAGGAGGCTGTCGACATGGCGCATTTTTTAC
TGCAGCGGGAGGGATTGTTTGTAGGGAGTTCAACCGCGATGAATGTGGTG
GGGGCCGTAAGGGCGGCCTGGGAATTGGGGAGGGGGCACACGGTGGTGAC
AGTGTTGTGCGATTCGGGTCAGAGACATTTGACGAGATTTTGGAGTCGGG
AATGGGTGGAGGGGGAGGAGAAGGGAGTGCGATGGCCTGAGAGGCCCTGG
ACGGACTTGAGGTTTTTAAAGAGAGTGGAGACGGAGTAG
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Coding sequence (CDS) from alignment at chr1:398833..400071+

>NO01G01580.1 ID=NO01G01580.1|Name=NO01G01580.1|organism=Nannochloropsis oceanica|type=CDS|length=1239bp|location=Sequence derived from alignment at chr1:398833..400071+ (Nannochloropsis oceanica)
ATGGCACCCGCTAGCAGCGGCAATCGCAGCGCGTCGTCCTTATCCCTTCT
GCTTGCCACTGCTATCTTTGCCTCCGCTTCAACTGTTGCTACCATTCTCC
TTCTTCCAGCTCTCCGTCGACGCCGTTCTCCGCCTCCCGGCACTCAGGAA
GAGAGTAATGGTGGCTATGCCGCCCTGATTGGCAATACCCCACTCGTTGA
GCTGCAGAGTCTGTCGAAAGCTACTGGGTGTCGTATCCTGGCTAAGGCTG
AGTACCTGAACCCTGGCGGTACAAGCAAGGACCGAGTGGCCTTGCGCATG
ATTCAAGAAGCGGAACGCGCCGGCTTGCTCAAGCCTGGGGGCACGGTGGT
GGAAGGCACGTCCGGGAGTACTGGTATTGCGTTAGCATCCTTGTGTCGGG
CGCGGGGGTACCGGTGCTTGATAGTCATGCCTGACGATCAGGCCGCGGAA
AAAGTGCGTTTACTCCAACAATACGGTGCCGAGGTCGAGGTGGTTAAACC
TGCCGGGATCGCCAACCCCAACCATTACTACAACCGTGCCCGGACCCGAG
CACAAGAACTTTCGCAGATGGGAAAAAATGCTATTTTTATGGATCAGTTT
GAAACAATGGCGAATTTTCATACGCATTACCATGGGACAGGCCCGGAATT
ATGGAGGCAGCTGGAGGAGGGGTTTGGATTGAGCCCGGATGCCTTTGTAA
TGTCGGCGGGGACGGGAGGGACGATTGCGGGTGTGAGTAGGTCATGGAAA
GAGATGAGAGGCAAGAAGGTGGTGAAGGTGTATTTGGTGGATCCGCCCGG
GTCGGCGCTGTTTAATAAGGTAAAGTTTGGGGTGTGTTATGCGAGTGAAC
AGAAGGAGAGGGGGGTGAGGAGGCACCGATATGATAGCTTGGCGGAAGGG
ATTGGTCTGGATAGGGTGACGGCGAACTTTCAAGAGGCGAGGGTTGATGA
TGCCTTTCGAGTGACAGATCAGGAGGCTGTCGACATGGCGCATTTTTTAC
TGCAGCGGGAGGGATTGTTTGTAGGGAGTTCAACCGCGATGAATGTGGTG
GGGGCCGTAAGGGCGGCCTGGGAATTGGGGAGGGGGCACACGGTGGTGAC
AGTGTTGTGCGATTCGGGTCAGAGACATTTGACGAGATTTTGGAGTCGGG
AATGGGTGGAGGGGGAGGAGAAGGGAGTGCGATGGCCTGAGAGGCCCTGG
ACGGACTTGAGGTTTTTAAAGAGAGTGGAGACGGAGTAG
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Synonyms
Publications