NO01G00710.1, NO01G00710.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G00710.1
Unique Name	NO01G00710.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1965
Alignment location	chr1:179296..181835 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:179296..181835 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO01G00710.1 vs.
Match: EWM29005.1 (ion channel [Nannochloropsis gaditana])

HSP 1 Score: 536.2 bits (1380), Expect = 1.100e-148
Identity = 300/509 (58.94%), Postives = 355/509 (69.74%), Query Frame = 0

Query:    1 MASTPASTISTISSSPPPKKKAKSSS-SPSSSSPFVNHYCGYVPPFGTTTVDTLDLASFLATHGADKAPAAFFEEYIALRKPVLIKGVLPDEAWLAGVGRLWKDHEYLKKKAGKALVKVETRGGIDEKYGQGKERTMRFDEFVEEVVEKGNELLYLTTQELEVGPEDRPAIMSSPLTELQDDFPLRPSLLGHLVPQNMNLWMGRSGSSSGSSSSGSSSGLHHDYHDNLYILLRGQKTFRLFAPSEAGNMYTVGKLKLVHPNGRIQYHDQPMVYADGRDMKADKAWEAAKRLEAAAAAAGEGDGGGGGEGGKEGGGGDNE--LEAALEAVLDAEMEGRDEDEDEDEDEDEEAWN-----------QGDKPASPALPPSLSPPSSSIASFTTTYTPSGEPPANFSRVDLTAPGGVDYALYPSFPRHLPLEVEVSEGEMFYVPAGWFHEVRSKGGVHAAFNYWVHPPDALGTEGGTEGGTEGGFERPYVSDFWERDWRER--GRVRGGGLGG 494
            M +TPA+  S      PP+K+ K+   SPS   P +N+Y GYVPP GTTTV+ +DL  FL+THG  +AP AFF +YI  RKPVLI+G LPD+ W AG   +WKD EYLK KAGKA V+VETR    E+YGQGKE TM F+EFV EVV+K N+LLYLTTQEL++GP+DRPA+MSSPLTELQ D PLRPSLL  LVPQNMNLWMGRSG   G     SSSGLHHDYHDNLYILL G+K FRL+APSEA NMYT+GKL+LVH NGR+ Y+ QP+  ADGR+  A KAWEAA+RLE  A  +         E GKEGG    E  LEAALEAVLD E+EG +  E ++E+E+E+A +           Q   P  P+LPP L P   S     TT+  +G+PPANFSRVDLTAP GVD AL+P+FPRH PLEVEV EGEM Y+PAGWFH V+SKGG+H A NYW HPPD        EGG   G +  Y+  FWERDW+ER  GR     +GG
Sbjct:    1 MTATPATFSSFTPPGSPPRKRNKAQEPSPSQDLPCINNYRGYVPPPGTTTVEAIDLPVFLSTHGERQAPFAFFRQYIGPRKPVLIRGTLPDQQWRAGT--MWKDPEYLKSKAGKARVRVETRENTREEYGQGKETTMLFEEFVTEVVDKENQLLYLTTQELDIGPDDRPALMSSPLTELQGDLPLRPSLLRLLVPQNMNLWMGRSGRGEGGREGESSSGLHHDYHDNLYILLGGRKVFRLYAPSEAPNMYTLGKLRLVHGNGRLNYYGQPLTCADGREKNAVKAWEAARRLEEVARRSER-------ESGKEGGREREEEALEAALEAVLDTELEGEEGKEGQEEEEEEDAASDQEEYPRLQAPQSGSPLPPSLPPPLPPSLPS-----TTFARTGKPPANFSRVDLTAPDGVDPALFPAFPRHPPLEVEVQEGEMLYLPAGWFHHVQSKGGIHMAVNYWFHPPDG-------EGGGGEGKDSVYMDGFWERDWQERMQGRREQEAVGG 488

The following BLAST results are available for this feature:

BLAST of NO01G00710.1 vs.

BLAST of NO01G00710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29005.1	1.100e-148	58.94	ion channel [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G00710	NO01G00710	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G00710.1	NO01G00710.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G00710.1.cds1	NO01G00710.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G00710.1.cds2	NO01G00710.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G00710.1.cds3	NO01G00710.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:179296..181835-
coding sequence from alignment at chr1:179296..181835-

mRNA sequence

>NO01G00710.1 ID=NO01G00710.1|Name=NO01G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1965bp
CCACTCACTCACTCACGTCATGTAGTAACATCAATATGGAATGCAGTGTC
TTCTACATGTAGACGTATTCGTGGATGATGCGCATGACATGCTCACATTT
GACCTAGTGGCCACCAGTGATTTTTTTTTAAAAAAAAACTGTCCTCCTTT
GCCCCCTGGTTGCAGCACCGCGGCCTCTTCGATCACTCACACACAACTTT
TGTTCTACCAACACCTCTCCTAAGCGCAATTCTTTCTTTATCTCTATCCC
TCGGCATTTGTCTTGGCTGCATGGGCGGGAACTTCTACTCAGTTTTGTTT
CCTCGCCATGCATTGAAAATCACAACAATGTCAAATCAATCGCTTCTATC
ATCGACCTCATACCCACCCCAAAGGACCTCCACATCCACTGACATACGAC
ACCGGCATGGCCTCCACTCCCGCATCTACCATCAGCACTATCTCTTCTAG
CCCTCCACCCAAAAAGAAAGCCAAGTCCTCCTCGTCCCCCTCCTCCTCCT
CCCCGTTCGTCAACCACTACTGCGGCTATGTGCCTCCGTTCGGCACCACC
ACCGTTGATACCCTTGACCTTGCATCCTTCCTAGCGACACACGGCGCCGA
CAAAGCACCTGCTGCCTTCTTCGAGGAGTACATTGCTTTGCGCAAGCCTG
TCCTCATCAAGGGTGTCTTGCCCGACGAAGCCTGGCTAGCGGGCGTGGGG
AGGCTATGGAAGGACCACGAGTATTTAAAGAAGAAAGCGGGCAAGGCCTT
GGTGAAGGTGGAGACCCGGGGTGGGATAGATGAGAAATATGGACAAGGAA
AAGAAAGGACGATGAGGTTCGACGAGTTTGTGGAGGAAGTGGTTGAAAAG
GGGAATGAGCTGTTGTACTTGACCACTCAAGAACTCGAAGTTGGACCGGA
GGACCGTCCTGCCATCATGTCAAGCCCTCTCACCGAGCTTCAGGATGACT
TCCCCCTCCGCCCCTCCCTTCTTGGTCATCTCGTCCCCCAAAATATGAAC
CTATGGATGGGTCGCAGTGGCAGCAGCAGCGGCAGTAGCAGCAGCGGCAG
CAGCAGTGGGTTGCACCACGACTACCACGACAATCTGTACATCTTGCTAA
GGGGGCAGAAGACATTCCGTCTCTTCGCACCCTCCGAAGCCGGCAACATG
TATACAGTGGGCAAGTTGAAGCTGGTGCATCCCAACGGTCGCATCCAATA
CCATGACCAACCGATGGTCTATGCTGACGGCCGGGACATGAAGGCGGACA
AGGCCTGGGAGGCTGCCAAAAGATTGGAAGCAGCAGCAGCAGCAGCAGGT
GAAGGAGACGGAGGAGGGGGAGGCGAGGGAGGGAAGGAAGGAGGGGGAGG
AGACAACGAATTGGAGGCGGCATTGGAGGCGGTCTTAGATGCGGAGATGG
AGGGGAGGGACGAGGACGAGGACGAGGACGAGGACGAGGACGAGGAAGCG
TGGAATCAGGGAGACAAACCGGCCAGCCCCGCCCTCCCTCCCTCCCTTTC
TCCCCCCTCTTCCTCCATCGCTTCCTTCACTACCACCTACACTCCCTCGG
GAGAACCCCCCGCAAATTTCTCTCGCGTGGACCTGACTGCGCCTGGTGGG
GTGGACTACGCCCTCTATCCCTCTTTCCCCCGGCACCTCCCCCTCGAGGT
GGAAGTGAGTGAAGGAGAGATGTTTTACGTACCAGCGGGATGGTTCCATG
AAGTCAGGAGCAAGGGAGGGGTGCATGCGGCTTTTAACTATTGGGTTCAT
CCGCCCGATGCCCTGGGGACGGAGGGCGGGACGGAGGGCGGGACGGAGGG
CGGTTTCGAGCGGCCTTACGTGAGTGATTTTTGGGAGAGGGACTGGAGGG
AACGAGGGAGGGTGAGGGGAGGGGGCTTGGGAGGGATCTAGGCCATCTCT
TCATGTACAGTAGGAAGAGACACGCGTACCGAAAGAAAGGGGAGGCACAA
AAAACAGAGAGATAG

protein sequence of NO01G00710.1

>NO01G00710.1-protein ID=NO01G00710.1-protein|Name=NO01G00710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=495bp
MASTPASTISTISSSPPPKKKAKSSSSPSSSSPFVNHYCGYVPPFGTTTV
DTLDLASFLATHGADKAPAAFFEEYIALRKPVLIKGVLPDEAWLAGVGRL
WKDHEYLKKKAGKALVKVETRGGIDEKYGQGKERTMRFDEFVEEVVEKGN
ELLYLTTQELEVGPEDRPAIMSSPLTELQDDFPLRPSLLGHLVPQNMNLW
MGRSGSSSGSSSSGSSSGLHHDYHDNLYILLRGQKTFRLFAPSEAGNMYT
VGKLKLVHPNGRIQYHDQPMVYADGRDMKADKAWEAAKRLEAAAAAAGEG
DGGGGGEGGKEGGGGDNELEAALEAVLDAEMEGRDEDEDEDEDEDEEAWN
QGDKPASPALPPSLSPPSSSIASFTTTYTPSGEPPANFSRVDLTAPGGVD
YALYPSFPRHLPLEVEVSEGEMFYVPAGWFHEVRSKGGVHAAFNYWVHPP
DALGTEGGTEGGTEGGFERPYVSDFWERDWRERGRVRGGGLGGI*

mRNA from alignment at chr1:179296..181835-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G00710.1 ID=NO01G00710.1|Name=NO01G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2540bp|location=Sequence derived from alignment at chr1:179296..181835- (Nannochloropsis oceanica)
CCACTCACTCACTCACGTCATGTAGTAACATCAATATGGAATGCAGTGTC
TTCTACATGTAGACGTATTCGTGGATGATGCGCATGACATGCTCACATTT
GACCTAGTGGCCACCAGTGATTTTTTTTTAAAAAAAAACTGTCCTCCTTT
GCCCCCTGGTTGCAGCACCGCGGCCTCTTCGATCACTCACACACAACTTT
TGTTCTACCAACACCTCTCCTAAGCGCAATTCTTTCTTTATCTCTATCCC
TCGGCATTTGTCTTGGCTGCATGGGCGGGAACTTCTACTCAGTTTTGTTT
CCTCGCCATGCATTGAAAATCACAACAATGTCAAATCAATCGCTTCTATC
ATCGACCTCATACCCACCCCAAAGGACCTCCACATCCACTGACATACGAC
ACCGGCATGGCCTCCACTCCCGCATCTACCATCAGCACTATCTCTTCTAG
CCCTCCACCCAAAAAGAAAGCCAAGTCCTCCTCGTCCCCCTCCTCCTCCT
CCCCGTTCGTCAACCACTACTGCGGCTATGTGCCTCCGTTCGGCACCACC
ACCGTTGATACCCTTGACCTTGCATCCTTCCTAGCGACACACGGCGCCGA
CAAAGCACCTGCTGCCTTCTTCGAGGAGTACATTGCTTTGCGCAAGCCTG
TCCTCATCAAGGGTGTCTTGCCCGACGAAGCCTGGCTAGCGGGCGTGGGG
AGGCTATGGAAGGACCACGAGTATTTAAAGAAGAAAGCGGGCAAGGCCTT
GGTGAAGGTGGAGACCCGGGGTGGGATAGATGAGAAATATGGACAAGGAA
AAGAAAGGACGATGAGGTTCGACGAGTTTGTGGAGGAAGTGGTTGAAAAG
GGGAATGAGCTGTTGTACTTGGTAAGGTGGGAGAGGGGCGGGCGGGAAGG
AGGGAGGGAGAGAGGGAGAGAGGGAGAGAGGGAGAGGGGAGGATAAAAGA
GCAGAGAAGAATGCAGGAAAAGGATGCATTTACTACCTTATACTTACAAG
CGCCTTGTAATTGTGTATTGTTCACTCCTTTTCTTCCTTCCTTTCTCCCT
CCCTCCCTCCATTCTCCTAGACCACTCAAGAACTCGAAGTTGGACCGGAG
GACCGTCCTGCCATCATGTCAAGCCCTCTCACCGAGCTTCAGGATGACTT
CCCCCTCCGCCCCTCCCTTCTTGGTCATCTCGTCCCCCAAAATATGAACC
TATGGATGGGTCGCAGTGGCAGCAGCAGCGGCAGTAGCAGCAGCGGCAGC
AGCAGTGGGTTGCACCACGACTACCACGACAATCTGTACATCTTGCTAAG
GGGGCAGAAGACATTCCGTCTCTTCGCACCCTCCGAAGCCGGCAACATGT
ATACAGTGGGCAAGTTGAAGCTGGTGCATCCCAACGGGTACGTCCTCCCT
CCCTCCCGCCCGCCCTCCTTCCCATGCTTCTACTCGTCGCGTCCTATGCT
TTTTCTCACTCGCACTATGAGACTTGCTCACACTCACACTCACACACACA
CACACACACTTGCTCTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCA
CACACACACACACACACACACACACACACACTCACACACACACACACATG
TTTATATATACATATATATAAACATATTCATGTATATAATACCAATTGTC
TATGTCGACACTCCCACACACTCGCAAGAACGAAAAACACACTCGCACGC
ACACACTTATTCACACATCTACCCGCATATACACACACATGTATACATAC
GCCCTCCTCGCAGTCGCATCCAATACCATGACCAACCGATGGTCTATGCT
GACGGCCGGGACATGAAGGCGGACAAGGCCTGGGAGGCTGCCAAAAGATT
GGAAGCAGCAGCAGCAGCAGCAGGTGAAGGAGACGGAGGAGGGGGAGGCG
AGGGAGGGAAGGAAGGAGGGGGAGGAGACAACGAATTGGAGGCGGCATTG
GAGGCGGTCTTAGATGCGGAGATGGAGGGGAGGGACGAGGACGAGGACGA
GGACGAGGACGAGGACGAGGAAGCGTGGAATCAGGGAGACAAACCGGCCA
GCCCCGCCCTCCCTCCCTCCCTTTCTCCCCCCTCTTCCTCCATCGCTTCC
TTCACTACCACCTACACTCCCTCGGGAGAACCCCCCGCAAATTTCTCTCG
CGTGGACCTGACTGCGCCTGGTGGGGTGGACTACGCCCTCTATCCCTCTT
TCCCCCGGCACCTCCCCCTCGAGGTGGAAGTGAGTGAAGGAGAGATGTTT
TACGTACCAGCGGGATGGTTCCATGAAGTCAGGAGCAAGGGAGGGGTGCA
TGCGGCTTTTAACTATTGGGTTCATCCGCCCGATGCCCTGGGGACGGAGG
GCGGGACGGAGGGCGGGACGGAGGGCGGTTTCGAGCGGCCTTACGTGAGT
GATTTTTGGGAGAGGGACTGGAGGGAACGAGGGAGGGTGAGGGGAGGGGG
CTTGGGAGGGATCTAGGCCATCTCTTCATGTACAGTAGGAAGAGACACGC
GTACCGAAAGAAAGGGGAGGCACAAAAAACAGAGAGATAG

Coding sequence (CDS) from alignment at chr1:179296..181835-

>NO01G00710.1 ID=NO01G00710.1|Name=NO01G00710.1|organism=Nannochloropsis oceanica|type=CDS|length=1485bp|location=Sequence derived from alignment at chr1:179296..181835- (Nannochloropsis oceanica)
ATGGCCTCCACTCCCGCATCTACCATCAGCACTATCTCTTCTAGCCCTCC
ACCCAAAAAGAAAGCCAAGTCCTCCTCGTCCCCCTCCTCCTCCTCCCCGT
TCGTCAACCACTACTGCGGCTATGTGCCTCCGTTCGGCACCACCACCGTT
GATACCCTTGACCTTGCATCCTTCCTAGCGACACACGGCGCCGACAAAGC
ACCTGCTGCCTTCTTCGAGGAGTACATTGCTTTGCGCAAGCCTGTCCTCA
TCAAGGGTGTCTTGCCCGACGAAGCCTGGCTAGCGGGCGTGGGGAGGCTA
TGGAAGGACCACGAGTATTTAAAGAAGAAAGCGGGCAAGGCCTTGGTGAA
GGTGGAGACCCGGGGTGGGATAGATGAGAAATATGGACAAGGAAAAGAAA
GGACGATGAGGTTCGACGAGTTTGTGGAGGAAGTGGTTGAAAAGGGGAAT
GAGCTGTTGTACTTGACCACTCAAGAACTCGAAGTTGGACCGGAGGACCG
TCCTGCCATCATGTCAAGCCCTCTCACCGAGCTTCAGGATGACTTCCCCC
TCCGCCCCTCCCTTCTTGGTCATCTCGTCCCCCAAAATATGAACCTATGG
ATGGGTCGCAGTGGCAGCAGCAGCGGCAGTAGCAGCAGCGGCAGCAGCAG
TGGGTTGCACCACGACTACCACGACAATCTGTACATCTTGCTAAGGGGGC
AGAAGACATTCCGTCTCTTCGCACCCTCCGAAGCCGGCAACATGTATACA
GTGGGCAAGTTGAAGCTGGTGCATCCCAACGGTCGCATCCAATACCATGA
CCAACCGATGGTCTATGCTGACGGCCGGGACATGAAGGCGGACAAGGCCT
GGGAGGCTGCCAAAAGATTGGAAGCAGCAGCAGCAGCAGCAGGTGAAGGA
GACGGAGGAGGGGGAGGCGAGGGAGGGAAGGAAGGAGGGGGAGGAGACAA
CGAATTGGAGGCGGCATTGGAGGCGGTCTTAGATGCGGAGATGGAGGGGA
GGGACGAGGACGAGGACGAGGACGAGGACGAGGACGAGGAAGCGTGGAAT
CAGGGAGACAAACCGGCCAGCCCCGCCCTCCCTCCCTCCCTTTCTCCCCC
CTCTTCCTCCATCGCTTCCTTCACTACCACCTACACTCCCTCGGGAGAAC
CCCCCGCAAATTTCTCTCGCGTGGACCTGACTGCGCCTGGTGGGGTGGAC
TACGCCCTCTATCCCTCTTTCCCCCGGCACCTCCCCCTCGAGGTGGAAGT
GAGTGAAGGAGAGATGTTTTACGTACCAGCGGGATGGTTCCATGAAGTCA
GGAGCAAGGGAGGGGTGCATGCGGCTTTTAACTATTGGGTTCATCCGCCC
GATGCCCTGGGGACGGAGGGCGGGACGGAGGGCGGGACGGAGGGCGGTTT
CGAGCGGCCTTACGTGAGTGATTTTTGGGAGAGGGACTGGAGGGAACGAG
GGAGGGTGAGGGGAGGGGGCTTGGGAGGGATCTAG

Synonyms

Publications