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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:163175..165043 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G00620.1 vs.
Match: EWM28986.1 (hypothetical protein Naga_100501g3 [Nannochloropsis gaditana]) HSP 1 Score: 293.5 bits (750), Expect = 1.500e-75 Identity = 174/377 (46.15%), Postives = 232/377 (61.54%), Query Frame = 0
Query: 6 NSIVFLALGSLGDLLPLLAIARRIAQQDHDQLD--------------VVVVTHAQYLSRLHALLHQSSNPLSPLRLV-LRGIPTPPLPLPNAGPSHVQHELDACLAACRIHTPIALLAFNLVAKFGIHLAELLSIPSYVLLHPSLAPPSPEPSLAYVRSMLGANLFKMMLRVEESEERFKEMTHWMLSLFLPVYHTFRERHGLCPCISSPSFQPSSSSSSSSSSLSLTARLALTGGTPLLYGVSEFFFPKPGYWPKAAVFCGAWRW-EEEDVR-----EGKEEWKEKWMPSEALQRFVEGEEGKEDTEATTCALARKGGEGEGKEGAMALPVLPASLPRPPLICLDMGSCVEVGLRTRSEWEGLIEGVVEALRRAFP 362
++++FLALGSLGD+LP+LA+A R ++ LD +V +TH YL RL LL ++ LS ++ + GI +PPLPL AGP V EL+ CLAA R H PIALLA NLVA+FG+H+ E+L S +L PSL PP+P PS +R++LG +++ + +R + M + MLSLFLP YH FRERHGL PC+SSPS P+ ++S + A AL G P LYGVSE FFPKPGYWP+++VFCGAW W +EE+V EG +E E W+P E L+RFVEGE ++ T R+ G+GK + + A PPLICLDMGS +E L R EWE L+E V+ AL++ FP
Sbjct: 11 HTVIFLALGSLGDVLPVLAVAHRFGRR----LDRRGPCPSRRKHLPALVFITHTLYLPRLKTLLERALPRLSQAPVLHIEGIDSPPLPLRRAGPVSVPDELEQCLAASRGHAPIALLACNLVARFGVHIGEILGAASSAVLAPSLPPPTPSPSPTLLRNLLGPKFLRLL--EDTGTDRLRYMEYGMLSLFLPAYHAFRERHGLSPCLSSPSAPPAPRTASQA------ALYALRGNLPFLYGVSEGFFPKPGYWPESSVFCGAWTWAQEEEVGREGGWEGGQEDGEGWVPDEELRRFVEGEGWPPKKKSATEGNVRRVSGGDGK---VKVSARTAGSSLPPLICLDMGSMIETELMGREEWEALVEEVLVALKKVFP 372
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G00620.1 ID=NO01G00620.1|Name=NO01G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1869bp ATGGCGTCCACTTCAAACAGCATCGTCTTCCTTGCCCTTGGCTCCCTAGG GGACCTCTTGCCGCTCCTTGCCATAGCCCGGCGTATCGCGCAGCAGGATC ATGACCAGCTCGATGTGGTCGTCGTCACCCACGCTCAATACCTGTCCCGT CTCCATGCGCTCCTCCACCAATCTTCCAATCCTCTTTCCCCCCTCCGCCT CGTCCTCCGAGGCATCCCCACACCGCCCTTACCCCTACCAAACGCCGGCC CCTCCCACGTTCAACACGAACTCGACGCCTGCCTCGCCGCCTGTCGCATT CACACCCCTATTGCCCTCCTCGCTTTTAATCTCGTCGCCAAGTTTGGCAT TCACCTCGCCGAGCTCCTCTCTATCCCTTCCTACGTCCTCCTCCACCCCT CCCTCGCCCCTCCCTCGCCCGAGCCCTCCCTCGCATATGTCAGGTCCATG TTGGGCGCAAATTTATTCAAGATGATGCTAAGGGTAGAGGAAAGCGAAGA GAGATTCAAGGAAATGACGCACTGGATGCTCAGCCTCTTCCTGCCTGTCT ATCACACCTTTCGAGAGCGGCACGGCCTGTGTCCCTGCATCTCCTCGCCG TCCTTCCAGCCCTCCTCCTCCTCCTCTTCCTCCTCCTCTTCCCTCTCACT CACTGCTCGTCTAGCCCTGACGGGTGGCACGCCCCTCCTGTACGGTGTCA GTGAATTCTTCTTCCCCAAACCCGGCTACTGGCCAAAGGCGGCCGTTTTC TGTGGCGCCTGGAGGTGGGAGGAGGAGGACGTGAGGGAGGGGAAGGAGGA ATGGAAGGAGAAATGGATGCCTTCGGAGGCTCTGCAGCGGTTTGTGGAAG GCGAGGAAGGGAAGGAGGACACAGAGGCGACGACATGTGCGCTGGCACGT AAAGGAGGAGAAGGAGAAGGAAAAGAGGGAGCAATGGCACTACCAGTGCT TCCTGCCTCCCTTCCCCGTCCCCCATTGATCTGTCTGGACATGGGTTCGT GCGTGGAGGTTGGACTTCGGACACGGAGTGAATGGGAGGGATTGATTGAG GGTGTGGTGGAGGCGCTGCGACGCGCTTTCCCTGGAGGGGGAGGAGGAGG AGGGAGAGAGGGAGGGAGGGGGGGAGGATCACCTGACAACCCTGAGAAAG GGGAGAAGAGGACAGGATATGGCAGCGGGGGCTTTCGTTTGCTGTTGCTG CACTTCCCTCCCTCCTCTTCACTGGGGGCGGAGGTGGCGTTGGAGAAAGA CGAGGAATGGGGGGTTGATGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC AGCAGAAGCTGACGTGCGATGATATTCTGCGTCTTCCAGTTGAAGAATAC GTTCCTCACTCCTGGCTTTTCCCTCGTTGTCACCTCGTGCTGCATCACGG AGGGTTGGGCTCAACGATGGCGTGCATAGGCGCAAGAGGAGGTGGAGGAG GAGGAGGAGGAGGAAAAGAGGAAGGAGGAGAAGGAGGAGGAGGAGGAGGA GGCGAAGGAGGAGGCGAGGGAGGAGAAGGAGGAGGGAGGGGGGTTCCTCA ACTGGTGCTGCCATGTACGGAGGAGCAGCGTGTTTGGGGGGAACGTGTCG CCTATCTGGGCATAGGGGCAGTGATGGGGAGGGAGGGAGAGCAGGACGGA GGGATAGAGGAAGCGGTGTACCAGGCGTTGAAGGGATTGGAGCGAGGGAG GGAGATCTGTCTGAAGACGATAAGGCGGTATGCAGGGTGGTTGAGGGAGG AGGATGGGGTGGGAAGGGCAGTGGAGGTGTTGATGGAAGAGATGAGCAGG AGGAGAAAGAAGAGGAGAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA GGAGGGGGAGGAGGAATGA back to topprotein sequence of NO01G00620.1 >NO01G00620.1-protein ID=NO01G00620.1-protein|Name=NO01G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=623bp MASTSNSIVFLALGSLGDLLPLLAIARRIAQQDHDQLDVVVVTHAQYLSR LHALLHQSSNPLSPLRLVLRGIPTPPLPLPNAGPSHVQHELDACLAACRI HTPIALLAFNLVAKFGIHLAELLSIPSYVLLHPSLAPPSPEPSLAYVRSM LGANLFKMMLRVEESEERFKEMTHWMLSLFLPVYHTFRERHGLCPCISSP SFQPSSSSSSSSSSLSLTARLALTGGTPLLYGVSEFFFPKPGYWPKAAVF CGAWRWEEEDVREGKEEWKEKWMPSEALQRFVEGEEGKEDTEATTCALAR KGGEGEGKEGAMALPVLPASLPRPPLICLDMGSCVEVGLRTRSEWEGLIE GVVEALRRAFPGGGGGGGREGGRGGGSPDNPEKGEKRTGYGSGGFRLLLL HFPPSSSLGAEVALEKDEEWGVDEQQQQQQQQQQQKLTCDDILRLPVEEY VPHSWLFPRCHLVLHHGGLGSTMACIGARGGGGGGGGGKEEGGEGGGGGG GEGGGEGGEGGGRGVPQLVLPCTEEQRVWGERVAYLGIGAVMGREGEQDG GIEEAVYQALKGLERGREICLKTIRRYAGWLREEDGVGRAVEVLMEEMSR RRKKRRKEEEEEEEEEEEGEEE* back to topmRNA from alignment at chr1:163175..165043+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G00620.1 ID=NO01G00620.1|Name=NO01G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1869bp|location=Sequence derived from alignment at chr1:163175..165043+ (Nannochloropsis oceanica) ATGGCGTCCACTTCAAACAGCATCGTCTTCCTTGCCCTTGGCTCCCTAGG
GGACCTCTTGCCGCTCCTTGCCATAGCCCGGCGTATCGCGCAGCAGGATC
ATGACCAGCTCGATGTGGTCGTCGTCACCCACGCTCAATACCTGTCCCGT
CTCCATGCGCTCCTCCACCAATCTTCCAATCCTCTTTCCCCCCTCCGCCT
CGTCCTCCGAGGCATCCCCACACCGCCCTTACCCCTACCAAACGCCGGCC
CCTCCCACGTTCAACACGAACTCGACGCCTGCCTCGCCGCCTGTCGCATT
CACACCCCTATTGCCCTCCTCGCTTTTAATCTCGTCGCCAAGTTTGGCAT
TCACCTCGCCGAGCTCCTCTCTATCCCTTCCTACGTCCTCCTCCACCCCT
CCCTCGCCCCTCCCTCGCCCGAGCCCTCCCTCGCATATGTCAGGTCCATG
TTGGGCGCAAATTTATTCAAGATGATGCTAAGGGTAGAGGAAAGCGAAGA
GAGATTCAAGGAAATGACGCACTGGATGCTCAGCCTCTTCCTGCCTGTCT
ATCACACCTTTCGAGAGCGGCACGGCCTGTGTCCCTGCATCTCCTCGCCG
TCCTTCCAGCCCTCCTCCTCCTCCTCTTCCTCCTCCTCTTCCCTCTCACT
CACTGCTCGTCTAGCCCTGACGGGTGGCACGCCCCTCCTGTACGGTGTCA
GTGAATTCTTCTTCCCCAAACCCGGCTACTGGCCAAAGGCGGCCGTTTTC
TGTGGCGCCTGGAGGTGGGAGGAGGAGGACGTGAGGGAGGGGAAGGAGGA
ATGGAAGGAGAAATGGATGCCTTCGGAGGCTCTGCAGCGGTTTGTGGAAG
GCGAGGAAGGGAAGGAGGACACAGAGGCGACGACATGTGCGCTGGCACGT
AAAGGAGGAGAAGGAGAAGGAAAAGAGGGAGCAATGGCACTACCAGTGCT
TCCTGCCTCCCTTCCCCGTCCCCCATTGATCTGTCTGGACATGGGTTCGT
GCGTGGAGGTTGGACTTCGGACACGGAGTGAATGGGAGGGATTGATTGAG
GGTGTGGTGGAGGCGCTGCGACGCGCTTTCCCTGGAGGGGGAGGAGGAGG
AGGGAGAGAGGGAGGGAGGGGGGGAGGATCACCTGACAACCCTGAGAAAG
GGGAGAAGAGGACAGGATATGGCAGCGGGGGCTTTCGTTTGCTGTTGCTG
CACTTCCCTCCCTCCTCTTCACTGGGGGCGGAGGTGGCGTTGGAGAAAGA
CGAGGAATGGGGGGTTGATGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGAAGCTGACGTGCGATGATATTCTGCGTCTTCCAGTTGAAGAATAC
GTTCCTCACTCCTGGCTTTTCCCTCGTTGTCACCTCGTGCTGCATCACGG
AGGGTTGGGCTCAACGATGGCGTGCATAGGCGCAAGAGGAGGTGGAGGAG
GAGGAGGAGGAGGAAAAGAGGAAGGAGGAGAAGGAGGAGGAGGAGGAGGA
GGCGAAGGAGGAGGCGAGGGAGGAGAAGGAGGAGGGAGGGGGGTTCCTCA
ACTGGTGCTGCCATGTACGGAGGAGCAGCGTGTTTGGGGGGAACGTGTCG
CCTATCTGGGCATAGGGGCAGTGATGGGGAGGGAGGGAGAGCAGGACGGA
GGGATAGAGGAAGCGGTGTACCAGGCGTTGAAGGGATTGGAGCGAGGGAG
GGAGATCTGTCTGAAGACGATAAGGCGGTATGCAGGGTGGTTGAGGGAGG
AGGATGGGGTGGGAAGGGCAGTGGAGGTGTTGATGGAAGAGATGAGCAGG
AGGAGAAAGAAGAGGAGAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGGGGAGGAGGAATGA back to topCoding sequence (CDS) from alignment at chr1:163175..165043+ >NO01G00620.1 ID=NO01G00620.1|Name=NO01G00620.1|organism=Nannochloropsis oceanica|type=CDS|length=1869bp|location=Sequence derived from alignment at chr1:163175..165043+ (Nannochloropsis oceanica) ATGGCGTCCACTTCAAACAGCATCGTCTTCCTTGCCCTTGGCTCCCTAGG GGACCTCTTGCCGCTCCTTGCCATAGCCCGGCGTATCGCGCAGCAGGATC ATGACCAGCTCGATGTGGTCGTCGTCACCCACGCTCAATACCTGTCCCGT CTCCATGCGCTCCTCCACCAATCTTCCAATCCTCTTTCCCCCCTCCGCCT CGTCCTCCGAGGCATCCCCACACCGCCCTTACCCCTACCAAACGCCGGCC CCTCCCACGTTCAACACGAACTCGACGCCTGCCTCGCCGCCTGTCGCATT CACACCCCTATTGCCCTCCTCGCTTTTAATCTCGTCGCCAAGTTTGGCAT TCACCTCGCCGAGCTCCTCTCTATCCCTTCCTACGTCCTCCTCCACCCCT CCCTCGCCCCTCCCTCGCCCGAGCCCTCCCTCGCATATGTCAGGTCCATG TTGGGCGCAAATTTATTCAAGATGATGCTAAGGGTAGAGGAAAGCGAAGA GAGATTCAAGGAAATGACGCACTGGATGCTCAGCCTCTTCCTGCCTGTCT ATCACACCTTTCGAGAGCGGCACGGCCTGTGTCCCTGCATCTCCTCGCCG TCCTTCCAGCCCTCCTCCTCCTCCTCTTCCTCCTCCTCTTCCCTCTCACT CACTGCTCGTCTAGCCCTGACGGGTGGCACGCCCCTCCTGTACGGTGTCA GTGAATTCTTCTTCCCCAAACCCGGCTACTGGCCAAAGGCGGCCGTTTTC TGTGGCGCCTGGAGGTGGGAGGAGGAGGACGTGAGGGAGGGGAAGGAGGA ATGGAAGGAGAAATGGATGCCTTCGGAGGCTCTGCAGCGGTTTGTGGAAG GCGAGGAAGGGAAGGAGGACACAGAGGCGACGACATGTGCGCTGGCACGT AAAGGAGGAGAAGGAGAAGGAAAAGAGGGAGCAATGGCACTACCAGTGCT TCCTGCCTCCCTTCCCCGTCCCCCATTGATCTGTCTGGACATGGGTTCGT GCGTGGAGGTTGGACTTCGGACACGGAGTGAATGGGAGGGATTGATTGAG GGTGTGGTGGAGGCGCTGCGACGCGCTTTCCCTGGAGGGGGAGGAGGAGG AGGGAGAGAGGGAGGGAGGGGGGGAGGATCACCTGACAACCCTGAGAAAG GGGAGAAGAGGACAGGATATGGCAGCGGGGGCTTTCGTTTGCTGTTGCTG CACTTCCCTCCCTCCTCTTCACTGGGGGCGGAGGTGGCGTTGGAGAAAGA CGAGGAATGGGGGGTTGATGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC AGCAGAAGCTGACGTGCGATGATATTCTGCGTCTTCCAGTTGAAGAATAC GTTCCTCACTCCTGGCTTTTCCCTCGTTGTCACCTCGTGCTGCATCACGG AGGGTTGGGCTCAACGATGGCGTGCATAGGCGCAAGAGGAGGTGGAGGAG GAGGAGGAGGAGGAAAAGAGGAAGGAGGAGAAGGAGGAGGAGGAGGAGGA GGCGAAGGAGGAGGCGAGGGAGGAGAAGGAGGAGGGAGGGGGGTTCCTCA ACTGGTGCTGCCATGTACGGAGGAGCAGCGTGTTTGGGGGGAACGTGTCG CCTATCTGGGCATAGGGGCAGTGATGGGGAGGGAGGGAGAGCAGGACGGA GGGATAGAGGAAGCGGTGTACCAGGCGTTGAAGGGATTGGAGCGAGGGAG GGAGATCTGTCTGAAGACGATAAGGCGGTATGCAGGGTGGTTGAGGGAGG AGGATGGGGTGGGAAGGGCAGTGGAGGTGTTGATGGAAGAGATGAGCAGG AGGAGAAAGAAGAGGAGAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA GGAGGGGGAGGAGGAATGA back to top
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