NO01G00360.1, NO01G00360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00360.1
Unique NameNO01G00360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1718
Alignment locationchr1:83765..86989 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:83765..86989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00360.1 vs.
Match: XP_005854216.1 (large subunit ribosomal protein L5e [Nannochloropsis gaditana CCMP526]; EKU22141.1 large subunit ribosomal protein L5e [Nannochloropsis gaditana CCMP526]; EWM28957.1 ribosomal protein l5 [Nannochloropsis gaditana])

HSP 1 Score: 570.1 bits (1468), Expect = 4.300e-159
Identity = 288/314 (91.72%), Postives = 301/314 (95.86%), Query Frame = 0 
Query:    1 MPFVKVLKNKQYFKRYQTKFRRRREGKTDYRARKRMVAQDKNKYNTPKYRLVVRFTNRYCIAQIVYATIEGDKVLAAANSKELARYGLKVGLKNYAAAYCTGLLIARRLLNKLGLDEAYEGVEEPDGEIPTTTDENNGRTYYVPELNDEKKPFRCILDVGIQTTTTGNRVFGVLKGASDGGLDIPQSEKRFPGYDRDGKRYDADSHKERIMGEHVAEYINYLVEEDHEAYERQFANYIKHGVSGDDYEEVLEKVHAAIREDPTPAPKEAWSGDRAKYKRQAKLTYEERKARVAEKKAALAAAAG-ADEMEEDDE 314
            MPFVKVLKNKQYFKRYQTKFRRRREGKTDYRARKRMVAQDKNKYNTPKYRLVVRFTNRYCIAQIVYATI+GDKVLAAANSKELARYGLKVGLKNYAAAYCTGLLIARRLLNKLGLDEAYEGV+EPDGEI TT DE NGRTYYVPELNDEKKPFR ILDVGIQTTTTGNR+FGVLKGASDGGLDIPQSEKRFPGYDRDGKRYDADSHKERIMGEHVA+YINYLVEEDHEAYERQFANYIKHGVSGDDY+++LE+VH AIREDPT APK  W GDR KYKRQ KL+YEERK+RVAEKK A+AAAAG ADEMEE++E
Sbjct:    1 MPFVKVLKNKQYFKRYQTKFRRRREGKTDYRARKRMVAQDKNKYNTPKYRLVVRFTNRYCIAQIVYATIDGDKVLAAANSKELARYGLKVGLKNYAAAYCTGLLIARRLLNKLGLDEAYEGVDEPDGEIATTKDETNGRTYYVPELNDEKKPFRAILDVGIQTTTTGNRIFGVLKGASDGGLDIPQSEKRFPGYDRDGKRYDADSHKERIMGEHVADYINYLVEEDHEAYERQFANYIKHGVSGDDYQDLLEEVHTAIREDPTAAPKTEWEGDRTKYKRQGKLSYEERKSRVAEKKLAMAAAAGDADEMEEEEE 314
The following BLAST results are available for this feature:
BLAST of NO01G00360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854216.14.300e-15991.72large subunit ribosomal protein L5e [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00360NO01G00360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00360.1NO01G00360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00360.1.cds1NO01G00360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00360.1.cds2NO01G00360.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00360.1.cds3NO01G00360.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00360.1.cds4NO01G00360.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00360.1.cds5NO01G00360.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00360.1.cds6NO01G00360.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00360.1.cds7NO01G00360.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00360.1.cds8NO01G00360.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00360.1.cds9NO01G00360.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00360.1 ID=NO01G00360.1|Name=NO01G00360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1718bp
TTCTTGTATTGGTCCCCTCCCTGTGTGTGTGGTACGTGGCGTAGTGCGGG
ATGTGAGTATCTCGTAGAAGAACCAAAAGGCGGAAGGAGAGGGGAAACCT
AAGAGGGAGATCTCTTCTCAGCCATTGATTTTATCCAAAAACCAGTTTTA
AAACATGCCTTGACTAGTCTATGCCATTCTTCCTCCTCCTCCCCTTCTCA
CTCATGTTCTCAGTGCTCAATTTCCTTTCCTTTCCTTCCGGAGAACGCAA
GCTGTCCCAGCGCCGCCGTGCAGCTTCGCCTCGCCGCAACCCATGGCTCT
CGTGTGCTCCTTCCCTGCGTTTCTTTTTTGCGGGTAGGAGGCTTATATCT
GCATGCCTCATGCCTGTCTCGCCGAAGTAATTCTTCGAGTGGCAACGAAG
GGAGAGCGAGGAGGTGTTGGAGGATGTGGGGGGTGGCGGTGAATGGACGG
CTGCGCGCAGGCAAGCAACAGACAGTCTCAGCCTCCTCCCTCTCCTCTTT
CCATGCCTTTCCTCCACCGCACATATACTCTTACACATCCCTTGCTCACA
ATGAACACACACCAAACCTGCACACATACTCAATTCTGCCACTTATGGTC
AGGTTTCGTCCTCCCACGTCGTAACCATGCCTTTCGTCAAGGTTCTCAAG
AACAAGCAGTACTTCAAGCGGTACCAGACCAAGTTCCGTCGTCGCCGTGA
GGGCAAAACGGACTACCGTGCCCGCAAGCGCATGGTCGCCCAAGACAAGA
ACAAGTACAACACGCCGAAGTACCGCCTGGTGGTCCGCTTTACCAACCGG
TACTGCATAGCCCAGATCGTGTACGCCACCATTGAAGGCGACAAGGTTCT
GGCCGCCGCCAACTCCAAGGAGCTCGCCCGTTACGGCCTCAAAGTGGGCC
TGAAGAACTACGCCGCTGCCTATTGCACGGGCCTCCTGATCGCCCGCCGT
CTGCTCAACAAGCTGGGCCTGGACGAGGCGTACGAGGGCGTGGAGGAGCC
CGATGGTGAGATTCCCACGACTACGGACGAAAATAACGGCCGCACCTACT
ACGTGCCAGAGCTCAACGACGAGAAGAAGCCCTTCCGTTGCATTTTGGAC
GTCGGTATCCAGACCACCACCACCGGCAACCGCGTCTTTGGTGTCCTCAA
GGGCGCTTCGGACGGCGGCCTGGACATTCCGCAGTCAGAGAAACGCTTCC
CAGGCTATGACCGTGACGGGAAGCGTTACGACGCGGACAGCCACAAGGAG
CGCATCATGGGAGAGCACGTAGCCGAGTACATCAATTATTTGGTGGAGGA
AGACCACGAGGCGTATGAGAGGCAGTTTGCGAACTACATCAAGCACGGGG
TGTCTGGCGACGACTACGAAGAGGTGCTGGAGAAGGTCCATGCTGCCATT
CGCGAGGACCCCACACCTGCCCCCAAAGAGGCATGGAGTGGCGACCGTGC
CAAGTACAAGCGACAGGCCAAGCTCACGTACGAGGAGCGTAAGGCACGCG
TGGCGGAGAAGAAGGCGGCCTTGGCGGCGGCTGCCGGGGCCGACGAGATG
GAGGAAGATGACGAATAAAGCGGTGGCGGAGATAGGAAGGAGAGCAGGGG
GAGGTTGGTGGAAGTCGAAGACAGCGCACTCGTGATGCGTGGGCAAAACG
ATGATCATGGCGGCAAACAGGATAGAAAAATCAGGAATGAGTCATGACAA
CCAAAAGATAGAGCTAGA
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protein sequence of NO01G00360.1

>NO01G00360.1-protein ID=NO01G00360.1-protein|Name=NO01G00360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MPFVKVLKNKQYFKRYQTKFRRRREGKTDYRARKRMVAQDKNKYNTPKYR
LVVRFTNRYCIAQIVYATIEGDKVLAAANSKELARYGLKVGLKNYAAAYC
TGLLIARRLLNKLGLDEAYEGVEEPDGEIPTTTDENNGRTYYVPELNDEK
KPFRCILDVGIQTTTTGNRVFGVLKGASDGGLDIPQSEKRFPGYDRDGKR
YDADSHKERIMGEHVAEYINYLVEEDHEAYERQFANYIKHGVSGDDYEEV
LEKVHAAIREDPTPAPKEAWSGDRAKYKRQAKLTYEERKARVAEKKAALA
AAAGADEMEEDDE*
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mRNA from alignment at chr1:83765..86989+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00360.1 ID=NO01G00360.1|Name=NO01G00360.1|organism=Nannochloropsis oceanica|type=mRNA|length=3225bp|location=Sequence derived from alignment at chr1:83765..86989+ (Nannochloropsis oceanica)
TTCTTGTATTGGTCCCCTCCCTGTGTGTGTGGTACGTGGCGTAGTGCGGG
ATGTGAGTATCTCGTAGAAGAACCAAAAGGCGGAAGGAGAGGGGAAACCT
AAGAGGGAGATCTCTTCTCAGCCATTGATTTTATCCAAAAACCAGTTTTA
AAACATGCCTTGACTAGTCTATGCCATTCTTCCTCCTCCTCCCCTTCTCA
CTCATGTTCTCAGTGCTCAATTTCCTTTCCTTTCCTTCCGGAGAACGCAA
GCTGTCCCAGCGCCGCCGTGCAGCTTCGCCTCGCCGCAACCCATGGCTCT
CGTGTGCTCCTTCCCTGCGTTTCTTTTTTGCGGGTAGGAGGCTTATATCT
GCATGCCTCATGCCTGTCTCGCCGAAGTAATTCTTCGAGTGGCAACGAAG
GGAGAGCGAGGAGGTGTTGGAGGATGTGGGGGGTGGCGGTGAATGGACGG
CTGCGCGCAGGCAAGCAACAGACAGTCTCAGCCTCCTCCCTCTCCTCTTT
CCATGCCTTTCCTCCACCGCACATATACTCTTACACATCCCTTGCTCACA
ATGAACACACACCAAACCTGCACACATACTCAATTCTGCCACTTATGGTC
AGGTTTCGTCCTCCCACGTCGTAACCATGGTAAGTCTCATCTCTTCATTT
CTCATTCACTGCATCATCACCGACGGCCCTCACTCACTCAACTCTCCCCG
CTACCTTCTCCCGAATCCTCACAGCCTTTCGTCAAGGTTCTCAAGAACAA
GCAGTACTTCAAGCGGTACCAGACCAAGTTCCGTCGTCGCCGTGGTACGT
GGGATGGAAGGAATAGAGGAAGCAGTGGGGTGGGAGGAGGGAGAGCGAAG
TGCTTGATGAGAGAGGATTGAGAGGACGGACCATGAGAGTTAGCTCGGCG
CCAGCACAGTTAAGACGTTGTCAGACCATCCTCTTGTGATCCTCCTTGCT
GGTTTGTAGCCTGTTTGCGTGGCCTCACCGAAGCATCACTTCGTGTCGTC
TCATCTCCTTGTCCCTCCCTCCCTTTCCCGACCTCTTAGAGGGCAAAACG
GACTACCGTGCCCGCAAGCGCATGGTCGCCCAAGACAAGAACAAGTACAA
CACGCCGAAGTACCGCCTGGTGGTCCGCTTTACCAACCGGTACTGCATAG
CCCAGATCGTGTACGCCACCATTGAAGGCGACAAGGTTCTGGCCGCCGCC
AACTCCAAGGAGCTCGCCCGTTACGGCCTCAAAGTACGGACATAGCATAC
CCTCCTTTCCTCATCCCCTCCCTCCTTTCCTCTTTCCCCGCTTATCTACT
GGTGACCTCTTTCCCCAACTTAAAGTGGTCTTATCTTTCCCTATTACAGT
CTCACATATCCTCCCCCCCTCCACTCTCTCTTCCCCTTTCCATAGGTGGG
CCTGAAGAACTACGCCGCTGCCTATTGCACGGGCCTCCTGATCGCCCGCC
GTCTGCTCAACAAGCTGGGCCTGGACGAGGCGTACGAGGGCGTGGAGGAG
GTACGGAGGGAGGAAAAGGAGGGGAGGGAGGGAGGAGAGGGTGAAGAGGA
AGGACTGGAAGGCTCCACACCGATTGGCCTCATCCGCTAATCCCCTCTCT
CCTTCCTCTCTTCTTCCTACCTTCCCTCGATTTTCAGCCCGATGGTGAGA
TTCCCACGACTACGGACGAAAATAACGGCCGCACCTACTACGTGCCAGAG
CTCAACGACGTACGTGTCTCCACCCTTCCCTCTTCCCTACCTCTCTCTGT
ATCTCCTTGTGGATGTTTCTCGTTCACTACCTACCCCACGGATGCTCTCC
TTTTTCCTCTCCTTCCCGTCCTGGCTCCACTCACTCACCTTCCCGTCCCT
TATTCCCTCTCTCCCTCCCTCCCTTCCAGGAGAAGAAGCCCTTCCGTTGC
ATTTTGGACGTCGGTATCCAGACCACCACCACCGGCAACCGCGTCTTTGG
TGTCCTCAAGGTACATTTTTCCTGCCCCTCCCTCCCTCCCCCCCTCCCTT
CCTCCCATTCCATTTTCCTCACGGATCACCACCCAACCGCACGCCGCTCT
TGAATGTTCTGCAGACACGCCCTATATCCCCCGATCCCTCCCTCCCGCTT
GTTTCGCTTTCTTCTCTGCGATCGCTCTCTTCTCCCGCCCTCCATCCATT
CCTCCCTCCATCCCTCCCTCCCTCCCTATAGGGCGCTTCGGACGGCGGCC
TGGACATTCCGCAGTCAGAGAAACGCTTCCCAGGCTATGACCGTGACGGG
AAGCGTTACGACGCGGACAGCCACAAGGAGCGCATCATGGGAGAGCACGT
AGCCGAGTACATCAATTATTTGGTGGAGGAAGACCACGAGGCGTATGAGA
GGCAGTTTGCGAACTACATCAAGGTGCGAAGAAGGGCTGCTTTTTGGTGC
TTCTTCGCCTTTTTTTTCCCTATCCCGCTTTCTCTCTACGCTTATTTAAA
GCGTATCGATTGGTTGTTGCTGTCAAGCATAGATATGAGTGGGCAGTAGC
GTGCATCTCCAGAAGGAAAGGGAGAAACAAAACAAGAGGAGAGGAGACGT
CTGTCCACACCCTCACACCTTCCTCCCCTCCTTCCCTCCCTCCCTCCCTC
CCTCCCCATCCCTCCCTCCTCAAGCACGGGGTGTCTGGCGACGACTACGA
AGAGGTGCTGGAGAAGGTCCATGCTGCCATTCGCGAGGACCCCACACCTG
CCCCCAAAGAGGCATGGAGTGGCGACCGTGCCAAGTACAAGCGACAGGCC
AAGGTAGGAGGCAGGATAGAGGAAGGAAGGCGCAGGGAGGGTAGAGGGCA
GGAGGGAGGAACGACAAAAAGCGTGTGGAGATGGTATCAAGGCTGTGGGC
GAGTGAGCGATTAGTTCTCCACCCGTTGACGCTTCAACCCTCCCCCTCCA
TTCTATGTTTCCCCTGAGGTTCTTCCATTCATTCTTCTTTTCTATTCGTT
CCTCCCCTCCCGCCCACCCACTCCCACAGCTCACGTACGAGGAGCGTAAG
GCACGCGTGGCGGAGAAGAAGGCGGCCTTGGCGGCGGCTGCCGGGGCCGA
CGAGATGGAGGAAGATGACGAATAAAGCGGTGGCGGAGATAGGAAGGAGA
GCAGGGGGAGGTTGGTGGAAGTCGAAGACAGCGCACTCGTGATGCGTGGG
CAAAACGATGATCATGGCGGCAAACAGGATAGAAAAATCAGGAATGAGTC
ATGACAACCAAAAGATAGAGCTAGA
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Coding sequence (CDS) from alignment at chr1:83765..86989+

>NO01G00360.1 ID=NO01G00360.1|Name=NO01G00360.1|organism=Nannochloropsis oceanica|type=CDS|length=942bp|location=Sequence derived from alignment at chr1:83765..86989+ (Nannochloropsis oceanica)
ATGCCTTTCGTCAAGGTTCTCAAGAACAAGCAGTACTTCAAGCGGTACCA
GACCAAGTTCCGTCGTCGCCGTGAGGGCAAAACGGACTACCGTGCCCGCA
AGCGCATGGTCGCCCAAGACAAGAACAAGTACAACACGCCGAAGTACCGC
CTGGTGGTCCGCTTTACCAACCGGTACTGCATAGCCCAGATCGTGTACGC
CACCATTGAAGGCGACAAGGTTCTGGCCGCCGCCAACTCCAAGGAGCTCG
CCCGTTACGGCCTCAAAGTGGGCCTGAAGAACTACGCCGCTGCCTATTGC
ACGGGCCTCCTGATCGCCCGCCGTCTGCTCAACAAGCTGGGCCTGGACGA
GGCGTACGAGGGCGTGGAGGAGCCCGATGGTGAGATTCCCACGACTACGG
ACGAAAATAACGGCCGCACCTACTACGTGCCAGAGCTCAACGACGAGAAG
AAGCCCTTCCGTTGCATTTTGGACGTCGGTATCCAGACCACCACCACCGG
CAACCGCGTCTTTGGTGTCCTCAAGGGCGCTTCGGACGGCGGCCTGGACA
TTCCGCAGTCAGAGAAACGCTTCCCAGGCTATGACCGTGACGGGAAGCGT
TACGACGCGGACAGCCACAAGGAGCGCATCATGGGAGAGCACGTAGCCGA
GTACATCAATTATTTGGTGGAGGAAGACCACGAGGCGTATGAGAGGCAGT
TTGCGAACTACATCAAGCACGGGGTGTCTGGCGACGACTACGAAGAGGTG
CTGGAGAAGGTCCATGCTGCCATTCGCGAGGACCCCACACCTGCCCCCAA
AGAGGCATGGAGTGGCGACCGTGCCAAGTACAAGCGACAGGCCAAGCTCA
CGTACGAGGAGCGTAAGGCACGCGTGGCGGAGAAGAAGGCGGCCTTGGCG
GCGGCTGCCGGGGCCGACGAGATGGAGGAAGATGACGAATAA
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Synonyms
Publications