NO01G00120.1, NO01G00120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00120.1
Unique NameNO01G00120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1125
Alignment locationchr1:18996..20473 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:18996..20473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00120.1 vs.
Match: EWM28940.1 (hypothetical protein Naga_100347g1 [Nannochloropsis gaditana])

HSP 1 Score: 84.3 bits (207), Expect = 8.500e-13
Identity = 62/153 (40.52%), Postives = 77/153 (50.33%), Query Frame = 0 
Query:  249 PSSAIPVP---------RTHTTIKRYSELLRYHRLWCEQRLVPRSLKAKFPPKTLLPPTMTMGTVR-------------TVGPVGRMDGDGEAGEASSSTLKRAYKLQLYFQALLDLKEEGTEE--GRMQG------GNLVESPLFWAMFAAS 372
            PSSA P+           TH  +KRYSELL  H LWCEQ LVP + K KFPPK  +   M  G+VR             T G    + G   A   S +   RA  LQ YF+ALL+L +EG  E  G  +G      G +V+SPLFW +F +S
Sbjct:  377 PSSASPLALSRVTSAMTSTHVAVKRYSELLSLHHLWCEQGLVPPAAKKKFPPKRRI-MFMGAGSVRHRRLNSRDAGAWKTTGE-DSLRGTPAAQPISRACQDRARALQDYFEALLELTKEGDMECKGGWEGRRAVKVGKVVKSPLFWMLFGSS 527
The following BLAST results are available for this feature:
BLAST of NO01G00120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28940.18.500e-1340.52hypothetical protein Naga_100347g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00120NO01G00120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00120.1NO01G00120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00120.1.cds1NO01G00120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00120.1.cds2NO01G00120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00120.1 ID=NO01G00120.1|Name=NO01G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1125bp
ATGGGCGTTGGATTGGAGTCATCGACTTCATCCCGCCGACCAGATGAGAA
AGCAAACGCTCCACATCAAGATTCAGCAGACGCTGCGGACGTCTGCCACG
ACCACCTCCGCAGCCAGAGCGTTCACAGCTCGGGCAGCTCTGGCAGTTGC
GATGGCAGTAGTCCTCCACGTCGGAGCAGCCTAGGCTCGACGTCGTCGAA
ACAGGAGGCGAGGGAGAGAGAAGGCAAGGAAAAAGGGCGGGGCCAAGCAA
ATAGTCTCCTCGGCGTACAAGGCCGCTTGACTGGCGAGCTCATCAAGCCT
CCCGACGCGCACCGCGAATCTCTCTTCGCGCCCTTTTACGCTTCGGATGC
AGCAGGCCCACCTGCCAAGAAGCCGCCCTCCTATTTGGCCTCTGCCGACG
GTGGGGCGAAGGAGGAAACGTGGTGGATGAAGGATGGAGGAGGGAGCGGA
GGGGATGAGGAAGGAAACATGGACGAGAGTTTGACAGCACGCTTGCGGCG
GCACACGCGGGAAGTGGCGAATTTAAAGACTAAAGAGGAGAGGAAGGTGC
CGCAGAGGGAAAGCAATGGCGGAGATGGAGTGGACAGAGGGAGAAGAGGG
GGAGTCGACGAGATCCAGGACGAAGGGCGGGAGAAGGGAGGAAGAGGAGA
ACAGAACGACAAGGGGGAAAGGGATACCGGATTGAGAAGAGCTGAACAGG
GAGCGGCAATGCCCTTGCTGGTGCAACACCGTCAGCAAGAGCCTCCCTCC
AGCGCCATCCCGGTTCCCCGCACTCACACTACTATAAAGCGCTACTCGGA
GCTCCTGCGTTACCACCGTCTTTGGTGCGAGCAGAGACTTGTGCCACGAT
CCCTCAAGGCCAAATTTCCGCCCAAAACTCTGCTGCCGCCGACGATGACG
ATGGGCACAGTCAGGACGGTGGGGCCCGTTGGGCGAATGGACGGAGATGG
TGAGGCAGGTGAGGCATCCAGCAGCACCCTGAAGAGGGCCTACAAGCTGC
AGCTCTATTTTCAAGCCTTGCTAGACTTGAAAGAGGAAGGGACAGAGGAA
GGAAGGATGCAGGGAGGCAATTTGGTGGAATCGCCTTTGTTCTGGGCTAT
GTTTGCTGCCAGCGGGCCAGAATAG
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protein sequence of NO01G00120.1

>NO01G00120.1-protein ID=NO01G00120.1-protein|Name=NO01G00120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MGVGLESSTSSRRPDEKANAPHQDSADAADVCHDHLRSQSVHSSGSSGSC
DGSSPPRRSSLGSTSSKQEAREREGKEKGRGQANSLLGVQGRLTGELIKP
PDAHRESLFAPFYASDAAGPPAKKPPSYLASADGGAKEETWWMKDGGGSG
GDEEGNMDESLTARLRRHTREVANLKTKEERKVPQRESNGGDGVDRGRRG
GVDEIQDEGREKGGRGEQNDKGERDTGLRRAEQGAAMPLLVQHRQQEPPS
SAIPVPRTHTTIKRYSELLRYHRLWCEQRLVPRSLKAKFPPKTLLPPTMT
MGTVRTVGPVGRMDGDGEAGEASSSTLKRAYKLQLYFQALLDLKEEGTEE
GRMQGGNLVESPLFWAMFAASGPE*
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mRNA from alignment at chr1:18996..20473-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00120.1 ID=NO01G00120.1|Name=NO01G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1478bp|location=Sequence derived from alignment at chr1:18996..20473- (Nannochloropsis oceanica)
ATGGGCGTTGGATTGGAGTCATCGACTTCATCCCGCCGACCAGATGAGAA
AGCAAACGCTCCACATCAAGATTCAGCAGACGCTGCGGACGTCTGCCACG
ACCACCTCCGCAGCCAGAGCGTTCACAGCTCGGGCAGCTCTGGCAGTTGC
GATGGCAGTAGTCCTCCACGTCGGAGCAGCCTAGGCTCGACGTCGTCGAA
ACAGGAGGCGAGGGAGAGAGAAGGCAAGGAAAAAGGGCGGGGCCAAGCAA
ATAGTCTCCTCGGCGTACAAGGCCGCTTGACTGGCGAGCTCATCAAGCCT
CCCGACGCGCACCGCGAATCTCTCTTCGCGCCCTTTTACGCTTCGGATGC
AGCAGGCCCACCTGCCAAGAAGCCGCCCTCCTATTTGGCCTCTGCCGACG
GTGGGGCGAAGGAGGAAACGTGGTGGATGAAGGATGGAGGAGGGAGCGGA
GGGGATGAGGAAGGAAACATGGACGAGAGTTTGACAGCACGCTTGCGGCG
GCACACGCGGGAAGTGGCGAATTTAAAGACTAAAGAGGAGAGGAAGGTGC
CGCAGAGGGAAAGCAATGGCGGAGATGGAGTGGACAGAGGGAGAAGAGGG
GGAGTCGACGAGATCCAGGACGAAGGGCGGGAGAAGGGAGGAAGAGGAGA
ACAGAACGACAAGGGGGAAAGGGATACCGGATTGAGAAGAGCTGAACAGG
GAGCGGCAATGCCCTTGCTGGTGCAACACCGTCAGCAAGAGCCTGTGACC
CATTCCCACCCTGAACCCTCCCCTCTACCCTCTCTTTAGCTCCCTCCCTC
TCCATCCCCTCGTCGAATCTCCCAAAGTATACCATCACAGTGGTCCCTTG
GCAAAGGGCTTCATCGATCTCTTATCCCTCATCGACTCGTCATGCCTCAT
CTGGCTGCCTGGGGCTCTTCCGCTGCACGAGCACTTGGAGCCATGCCTTC
CCCTCGACCTCCTTCCCTCCCTCTTCCTTCATAACCTATAAAATCACACT
TACCCTCGGTGACTCTTTCTCTTTTCCGCTGACATCCTGCTTTTCGTCTT
CCCCCTCATTCGTTACCCCTCCCTCGTCCTCCCCGACCTTCGTCCAGCCC
TCCAGCGCCATCCCGGTTCCCCGCACTCACACTACTATAAAGCGCTACTC
GGAGCTCCTGCGTTACCACCGTCTTTGGTGCGAGCAGAGACTTGTGCCAC
GATCCCTCAAGGCCAAATTTCCGCCCAAAACTCTGCTGCCGCCGACGATG
ACGATGGGCACAGTCAGGACGGTGGGGCCCGTTGGGCGAATGGACGGAGA
TGGTGAGGCAGGTGAGGCATCCAGCAGCACCCTGAAGAGGGCCTACAAGC
TGCAGCTCTATTTTCAAGCCTTGCTAGACTTGAAAGAGGAAGGGACAGAG
GAAGGAAGGATGCAGGGAGGCAATTTGGTGGAATCGCCTTTGTTCTGGGC
TATGTTTGCTGCCAGCGGGCCAGAATAG
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Coding sequence (CDS) from alignment at chr1:18996..20473-

>NO01G00120.1 ID=NO01G00120.1|Name=NO01G00120.1|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at chr1:18996..20473- (Nannochloropsis oceanica)
ATGGGCGTTGGATTGGAGTCATCGACTTCATCCCGCCGACCAGATGAGAA
AGCAAACGCTCCACATCAAGATTCAGCAGACGCTGCGGACGTCTGCCACG
ACCACCTCCGCAGCCAGAGCGTTCACAGCTCGGGCAGCTCTGGCAGTTGC
GATGGCAGTAGTCCTCCACGTCGGAGCAGCCTAGGCTCGACGTCGTCGAA
ACAGGAGGCGAGGGAGAGAGAAGGCAAGGAAAAAGGGCGGGGCCAAGCAA
ATAGTCTCCTCGGCGTACAAGGCCGCTTGACTGGCGAGCTCATCAAGCCT
CCCGACGCGCACCGCGAATCTCTCTTCGCGCCCTTTTACGCTTCGGATGC
AGCAGGCCCACCTGCCAAGAAGCCGCCCTCCTATTTGGCCTCTGCCGACG
GTGGGGCGAAGGAGGAAACGTGGTGGATGAAGGATGGAGGAGGGAGCGGA
GGGGATGAGGAAGGAAACATGGACGAGAGTTTGACAGCACGCTTGCGGCG
GCACACGCGGGAAGTGGCGAATTTAAAGACTAAAGAGGAGAGGAAGGTGC
CGCAGAGGGAAAGCAATGGCGGAGATGGAGTGGACAGAGGGAGAAGAGGG
GGAGTCGACGAGATCCAGGACGAAGGGCGGGAGAAGGGAGGAAGAGGAGA
ACAGAACGACAAGGGGGAAAGGGATACCGGATTGAGAAGAGCTGAACAGG
GAGCGGCAATGCCCTTGCTGGTGCAACACCGTCAGCAAGAGCCTCCCTCC
AGCGCCATCCCGGTTCCCCGCACTCACACTACTATAAAGCGCTACTCGGA
GCTCCTGCGTTACCACCGTCTTTGGTGCGAGCAGAGACTTGTGCCACGAT
CCCTCAAGGCCAAATTTCCGCCCAAAACTCTGCTGCCGCCGACGATGACG
ATGGGCACAGTCAGGACGGTGGGGCCCGTTGGGCGAATGGACGGAGATGG
TGAGGCAGGTGAGGCATCCAGCAGCACCCTGAAGAGGGCCTACAAGCTGC
AGCTCTATTTTCAAGCCTTGCTAGACTTGAAAGAGGAAGGGACAGAGGAA
GGAAGGATGCAGGGAGGCAATTTGGTGGAATCGCCTTTGTTCTGGGCTAT
GTTTGCTGCCAGCGGGCCAGAATAG
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Synonyms
Publications