NO01G00030.1, NO01G00030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00030.1
Unique NameNO01G00030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length564
Alignment locationchr1:4741..5304 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:4741..5304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00030.1 vs.
Match: EWM30045.1 (hypothetical protein Naga_101600g1 [Nannochloropsis gaditana])

HSP 1 Score: 109.4 bits (272), Expect = 1.200e-20
Identity = 75/189 (39.68%), Postives = 110/189 (58.20%), Query Frame = 0 
Query:    1 MHRALSLLALGITLALTAAQPMLTLTSIKAVDSTSNNQDKWSMKGFLNDPDADLISTIADEGLSADLVNSDDLLVSDVTFAAAACRDLSNGRGVLCKDAGARISFKRTKRVPHEAKVKAMKNHNKTDSASSYYSVSGVFRRQQF-ENTISNSANLSGSLGNNQAFTDEPTLSNC--RKKGGARTTKLFC 187
            M R LSLLALG+TL +TA Q   TL ++K  + +   +D+WSMKG L++P  +++  I   GL+ +L++     ++   FAA  C+ L NGRGV CK  GAR+S KRT+R P  AKVK+    + ++S   YY  SG+FRR QF ++ +     +   +G+    T    +S C  R KG  R TK+ C
Sbjct:    1 MRRILSLLALGVTLVMTAGQEF-TLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVRCKKMGARVSIKRTRR-PKGAKVKS----SNSNSTGGYYGASGMFRRLQFLQDPVVTPLTVQVVVGST---TLPAIVSTCSERTKGAGRITKITC 180
The following BLAST results are available for this feature:
BLAST of NO01G00030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30045.11.200e-2039.68hypothetical protein Naga_101600g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00030NO01G00030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00030.1NO01G00030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00030.1.cds1NO01G00030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00030.1 ID=NO01G00030.1|Name=NO01G00030.1|organism=Nannochloropsis oceanica|type=mRNA|length=564bp
ATGCATCGCGCCCTTTCTCTGCTTGCCCTCGGCATCACCCTCGCCCTGAC
AGCGGCTCAGCCGATGTTGACCCTCACCTCCATTAAGGCAGTCGACTCGA
CAAGCAACAATCAGGACAAATGGAGCATGAAGGGCTTCCTCAACGATCCT
GATGCCGATTTAATCTCGACCATCGCCGATGAGGGCTTGAGCGCGGACCT
TGTAAACAGTGACGATCTTCTTGTGAGTGATGTGACATTTGCCGCGGCTG
CTTGTAGAGACCTCAGCAACGGCAGGGGAGTCCTTTGCAAGGATGCGGGC
GCCCGTATCTCGTTCAAGAGGACGAAGAGGGTACCGCATGAGGCCAAGGT
GAAGGCGATGAAGAACCACAACAAGACGGACAGCGCTTCTTCCTACTACA
GTGTGTCGGGTGTTTTCCGCCGTCAGCAATTCGAGAACACTATCTCTAAC
TCAGCGAATCTATCAGGAAGTCTTGGCAACAACCAGGCATTTACTGACGA
GCCCACACTCTCTAACTGCAGGAAGAAGGGGGGTGCCAGGACCACCAAGC
TCTTCTGCCAGTAA
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protein sequence of NO01G00030.1

>NO01G00030.1-protein ID=NO01G00030.1-protein|Name=NO01G00030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MHRALSLLALGITLALTAAQPMLTLTSIKAVDSTSNNQDKWSMKGFLNDP
DADLISTIADEGLSADLVNSDDLLVSDVTFAAAACRDLSNGRGVLCKDAG
ARISFKRTKRVPHEAKVKAMKNHNKTDSASSYYSVSGVFRRQQFENTISN
SANLSGSLGNNQAFTDEPTLSNCRKKGGARTTKLFCQ*
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mRNA from alignment at chr1:4741..5304-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00030.1 ID=NO01G00030.1|Name=NO01G00030.1|organism=Nannochloropsis oceanica|type=mRNA|length=564bp|location=Sequence derived from alignment at chr1:4741..5304- (Nannochloropsis oceanica)
ATGCATCGCGCCCTTTCTCTGCTTGCCCTCGGCATCACCCTCGCCCTGAC
AGCGGCTCAGCCGATGTTGACCCTCACCTCCATTAAGGCAGTCGACTCGA
CAAGCAACAATCAGGACAAATGGAGCATGAAGGGCTTCCTCAACGATCCT
GATGCCGATTTAATCTCGACCATCGCCGATGAGGGCTTGAGCGCGGACCT
TGTAAACAGTGACGATCTTCTTGTGAGTGATGTGACATTTGCCGCGGCTG
CTTGTAGAGACCTCAGCAACGGCAGGGGAGTCCTTTGCAAGGATGCGGGC
GCCCGTATCTCGTTCAAGAGGACGAAGAGGGTACCGCATGAGGCCAAGGT
GAAGGCGATGAAGAACCACAACAAGACGGACAGCGCTTCTTCCTACTACA
GTGTGTCGGGTGTTTTCCGCCGTCAGCAATTCGAGAACACTATCTCTAAC
TCAGCGAATCTATCAGGAAGTCTTGGCAACAACCAGGCATTTACTGACGA
GCCCACACTCTCTAACTGCAGGAAGAAGGGGGGTGCCAGGACCACCAAGC
TCTTCTGCCAGTAA
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Coding sequence (CDS) from alignment at chr1:4741..5304-

>NO01G00030.1 ID=NO01G00030.1|Name=NO01G00030.1|organism=Nannochloropsis oceanica|type=CDS|length=564bp|location=Sequence derived from alignment at chr1:4741..5304- (Nannochloropsis oceanica)
ATGCATCGCGCCCTTTCTCTGCTTGCCCTCGGCATCACCCTCGCCCTGAC
AGCGGCTCAGCCGATGTTGACCCTCACCTCCATTAAGGCAGTCGACTCGA
CAAGCAACAATCAGGACAAATGGAGCATGAAGGGCTTCCTCAACGATCCT
GATGCCGATTTAATCTCGACCATCGCCGATGAGGGCTTGAGCGCGGACCT
TGTAAACAGTGACGATCTTCTTGTGAGTGATGTGACATTTGCCGCGGCTG
CTTGTAGAGACCTCAGCAACGGCAGGGGAGTCCTTTGCAAGGATGCGGGC
GCCCGTATCTCGTTCAAGAGGACGAAGAGGGTACCGCATGAGGCCAAGGT
GAAGGCGATGAAGAACCACAACAAGACGGACAGCGCTTCTTCCTACTACA
GTGTGTCGGGTGTTTTCCGCCGTCAGCAATTCGAGAACACTATCTCTAAC
TCAGCGAATCTATCAGGAAGTCTTGGCAACAACCAGGCATTTACTGACGA
GCCCACACTCTCTAACTGCAGGAAGAAGGGGGGTGCCAGGACCACCAAGC
TCTTCTGCCAGTAA
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Synonyms
Publications