jgi.p|Nanoce1779_2|262917, gene_9818 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|262917
Unique Namegene_9818
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_32:191055..194236 +

Link to JBrowse

Properties
Property NameValue
TranscriptId263003
ProteinId262917
Product nameDNA glycosylase
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_32supercontigscaffold_32:191055..194236 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004519endonuclease activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0006284base-excision repair
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL050ncniL050Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00440NO18G00440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|262917mRNA_9818-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|262917mRNA_9818Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|262917

>mRNA_9818-protein ID=mRNA_9818-protein|Name=jgi.p|Nanoce1779_2|262917|organism=Nannochloropsis oceanica|type=polypeptide|length=484bp
MRSKPGSNTTTAMTKTKAKQSKATKTTTVSASAAPASLPPPPPALLSKAQ
AIHRLLDQLYPNPPIPLDHFDNYSLLIAVILSAQTTDGKVNEVTPGLFKV
APTPAHLAALPHATVLSLIRSVGLAPGKAKNIIGAAKMLVDTFGGQVPST
FEELESLPGVGHKTASVLMSQAFNYPAFPVDTHVHRCALRWGLCKETQDV
KKVEAALKSLFPRDAWSRIGLQIIYFGREHCPAKKHVSSACPICCWVKGG
KSKGAPPPSLPLTSSGKGGGKNDGKEGGLEEWLIQFEGASPGKANKNIIL
YSERRKEEEGGKEGKGRAVLADVMVMEKEEEKGKEREGRKVGGKRTAIVK
TGSKMVVVKKEEEGKEGGKERWSIKTRNVTTASTMVVVKKEEGRKEGGKE
GGRVKREKVTRASKVTFVEKEEGGKERGRMKRALVVTVKTEECGEGKDGG
KKRKVATRRTVSIKSEGGKEQRKGCVTRTRSLK*
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Synonyms
Publications