jgi.p|Nanoce1779_2|533301, gene_9296 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|533301
Unique Namegene_9296
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_35:14086..17077 -

Link to JBrowse

Properties
Property NameValue
TranscriptId533387
ProteinId533301
Product name1-deoxy-D-xylulose 5-phosphate reductoisomerase chloroplast precursor
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_35supercontigscaffold_35:14086..17077 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:00306041-deoxy-D-xylulose-5-phosphate reductoisomerase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008299isoprenoid biosynthetic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL053ncniL053Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G02320NO17G02320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533301mRNA_9296-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533301mRNA_9296Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|533301

>mRNA_9296-protein ID=mRNA_9296-protein|Name=jgi.p|Nanoce1779_2|533301|organism=Nannochloropsis oceanica|type=polypeptide|length=408bp
MPSLFFLLCPQRKISLLGSTGSIGTQTLDIVTERSDIYEVTALAAGNNID
LLAQQIKQFRPAIASVQDESRLPALKAKLTELGVPPSEWPELGAGQDGVI
ACATEKDADVVVTGIVGCAGLIPTVEAIKARKTIALANKETLISGGPAIV
PLLKQYGVNVIPADSEHSAIFQSLQGVPPGGLRRIILTASGGAFRDWPVE
DLKKVTVADALKHPNWDMGAKITVDSATMMNKGLEVIEAHYLFGTAYDDI
DVVIHPQSIIHSLIETQDTSMIGQLGWPDMRLPILYSISWPHRIPMNYKP
LDLVALGSLTFKAPDNKKYPCIQLAYAAGRAGGTMTAALNAANERANEIF
RQEKIGYLDIAKVVEGTMESHKKDWKEMPSLEDIIAVDAWARVRVDELAE
KLNYVAA*
back to top
Synonyms
Publications