jgi.p|Nanoce1779_2|605904, gene_9264 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605904
Unique Namegene_9264
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_33:133941..136634 -

Link to JBrowse

Properties
Property NameValue
TranscriptId605990
ProteinId605904
Product nameGlycosyltransferase (GlcNAc)-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:133941..136634 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0033830Skp1-protein-hydroxyproline N-acetylglucosaminyltransferase activity
GO:0016706oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL051ncniL051Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00540NO30G00540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605904mRNA_9264-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605904mRNA_9264Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|605904

>mRNA_9264-protein ID=mRNA_9264-protein|Name=jgi.p|Nanoce1779_2|605904|organism=Nannochloropsis oceanica|type=polypeptide|length=753bp
MAVPQDVLDTITPAEVHLLAHPSPSSSFFVRDGAFLLAPSRSNEEDDYDD
EEARQEEQAVLLREEIRTIQTQGKLCPAGMSRGSGKWNDDDFRGDEIAWL
SILSPSNPSAPSPSFSSDTFTPNKSSPSTLSIAPRSALHTLLGRLEEIRD
RIDILDRGGPSPPLLNLDKCKRRSMQLAYYPGNGKRYVRHRDTFPADIPK
EGGEGDERKDKALESVRCLTMIYYLNADWTPEQGGELRLFLGDDEGGRGH
QDGRFWDVAPILDRLVVFRSDVIEHEVLPVYGPRFALTCWFYGRPTNTLG
PLLSSSTPSPLASLAIALPSSSSGATSAAATISSFLAPLHPSLKPKLNPT
ITVPPPPSPPSRRPRGSFSSAPPLDIEDESLNEEVEEASIFVSIASYRDS
ECQHTLHSLFKTAMRPERIHVGLVLQFSEEEDKACFTHPLPPLWANQVRT
LSLSHLEAAGPCWARHLAQALRQNERYVLQLDSHMRFRPGWDVFLLQTLL
RCPTPARSILTTYPIGYTLPSTCPSDTRPTLLCPSGFDSHGMLRQTARRC
KQQQHLEQPIPSKLWASGFNFAPAQAWEEVPYDPNLRHLFFGEEVSMAAR
LWTWGWDFFAPPETVLYHLWSRDHRPSFRELKTEKSEDEQMKSMMRVRKL
LGEGTTAQNVEELGRYGLGSVRSLREYERLLGVSFALATVTSSNAQWGGQ
PSDFFESGNGAIVGEGNSEGRGKEQHHRQQSAAVEGVVRTSSLQALVNSF
LS*
back to top
Synonyms
Publications