jgi.p|Nanoce1779_2|673595, gene_8654 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|673595
Unique Namegene_8654
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_27:73111..82949 +

Link to JBrowse

Properties
Property NameValue
TranscriptId673681
ProteinId673595
Product nameIon transport protein-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:73111..82949 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL044ncniL044Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00640NO27G00640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673595mRNA_8654-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673595mRNA_8654Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|673595

>mRNA_8654-protein ID=mRNA_8654-protein|Name=jgi.p|Nanoce1779_2|673595|organism=Nannochloropsis oceanica|type=polypeptide|length=2260bp
MSSSPPQSPPLPSLMSRKEEDDRGDGGAAAAGGSSDQNVPGMRAHGTAMR
RTSTIIANDDSTNSADSDSTNSSILSSIITIQRNDDDGSSSILQAGTSPS
PATAAAARPSAAATRRGKKLPSSRIASETTAAAVTAAGGAAGGAGGGGNL
PLLHPLRLPAILLLDSIVWDAGTLVLVLFNAVCLAFYRPALINTSTLAQI
ILMCEIFCQICFTNELFVKLLALGVVKFKNSYFRDPWNVFDFLVLVAGWL
ALYATLFSSSSLPSSSSIHGPLMVFGVLRVLRPFRLLNLLPELKRLSGAV
VLALPSLTTLMSLAFLVFLALSLVGMQLLQGKFNQECYMPIGGYWESSNA
IMSRSSRSSSSGSDGDVWLKGAGAGAAVGADGRGEKSMLLCSMTGGKGGG
RACPAGGWECKDGREVGRVGPNGGWTSFDNVWVSLLTIFQCMTREGWSDV
MYWARQSGGGLMVYVFFILILLLSFFLFQLIVVFVIVNYAKSQSQGEKVT
GGQGGRDGGVAKVPAVSDRKEGARKKGVVLPLMGEEGSEGGKEGGKEGGI
LQTKLDTKNGDFSELLISKLLAIKAGARLEALTSLPPSLPPSFPPASSFS
SSVPKEGGVNVRVGEISLLLQRALRHLQLAPQHSLPPSYFRLRRNGEEDG
EEEGEEDEEGEAGPLMRTGKGGRKKREVDPSKVSYEESPGTYICAAIARS
QSFYYFGHFITLLSALLLSLAHYGMSPILNKTLTTMNNFLVFVFCLEVLI
KVRGWGWRRYKDDVGGAGVDLLVVVVSLLELFLGGTSSRSYALRCVRLVR
LFGLGRDLDMGFRKAMDNVVYTASISLPFLLLLGTFLCVFAIGGMTFLGG
KLMESDSLTGLPVPARMNFDSFYWSVISVFQIMTLDDWNKKMYMAMTVTD
SALAVGYYVSAVLIGKYGLLNLLTAILVYNYGLLQEEEEEEEGKEKEREG
KEGRMVVVKKEEKEEGRELLPPMWVYVWQRLPFRKCFSTGKSSGSSSSNN
SGSSSTSTSSSSSRGRSGSASGKHAPPPPSSSSFPPSGAGAAPSQLSLLR
EKDESEDEDEDEGEGEDRAQVIASSKRQSGTVLALCYRCICPSSSCASSF
FPRSLNCLDAACFQVYNHRSFPSLMVGAVVFSCVVLAFDGPGASGMGPSH
TWRVLTHSCEAVFFGLLLFEQIYLCRSLGGAWTYSNSYLTHPSHFINLLL
LLSTLLPLLFRSLPPVFFVIRGLRPLTLIPRLNGLQIVVYTLSLALHACG
GVLALLAVLYLLFAILGVSLFSGGFYSCNDPQRTCIPPASSSTTTAAAAA
AAAGSATATSGGSLTPHPLPTTALSGEGLRERAAPGGPFHCPSNLACVGK
FYDPYTASMLERKWQNPSFSPQGSTYSFDSVPAALLTLFEVANLEGWANI
MFSAVDVVGQGRGSERNANPGAAVYFVSFLFVVCFFVQEIFVAVIVDHFK
RLKTVLNGSAFMTEEQKEWVRLQKTIKKRHPRIHSPPSQDRAPIRARVYA
LVKSSFFEPSVTAVVAVNVLLMLAAPSSFPSSISPNFHRHVDTIFTYIYS
SELLLRLYALGPYAYFFPALSSPVPPSISFLPPSRPWNLYDCGIAVWGIL
YLAVGEVGRECASCLLLLRLGRTLRIFRLVRHSEHLRRLCRTLYLALPSL
KNIGMFLLLIYYIYAIGGMHLFSTLPFGTYINADANFTSFSLAFLLLLRC
TAGENWNGLMHEADQAERGRVRVAVFYFCSFMIMISYVVLNLFIATMLEH
FQDMEGGKEGKRLVCSRDIRIFSRLWTEAKKRSLRGDLTKIDNRASTTVT
AVMAVKRRKEGGDGGASSMVVAAVRKMRKKGTAAGESSSSNSSNSSSNSS
NNNNNVLIASPSLLLPHSPTPTTPSTDDTGLTAVATPSSLPSSTSPGTSS
QPQLQQQQQQQQQQPSSSPSSSLPLSPLLPSQVAGSSSSSGTGSSGVCGD
ADWPATLSLRRSQQQQQQQQQQQQQQEQMQEQARTPSSPSSSPPTSRHIS
ISLSHSSPAHELLQQQQRQSASNQAMSTSSSSSSSTSTTGTSIPNAEEKT
REDMDGEQEEQVQEQEEEDEDEEEDAEEKDEDEDEDEDEDEEEEEIHGMK
EEDVEAEMLALQQLGEEFLSSTCTSTTRSRPRLRSTLPSSFSASVGRGGG
LGERGEGGREGSRRSSMAMVEDGDVDLALIEQELLSSFSRQHQQHQQQDA
VLSQEEEEMVGRRTFTSGAGVAQAPSVVLRSSATPFSSSLLSGRGQMEEK
REAGEDGQH*
back to top
Synonyms
Publications