jgi.p|Nanoce1779_2|672204, gene_7239 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|672204
Unique Name	gene_7239
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_16:677560..686535 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	672290
ProteinId	672204
Product name	expressed protein
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:677560..686535 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
GO annotation for N. oceanica CCMP1779 v2	2020-03-30
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL025	ncniL025	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO22G02200	NO22G02200	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672204	mRNA_7239-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672204	mRNA_7239	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|672204

>mRNA_7239-protein ID=mRNA_7239-protein|Name=jgi.p|Nanoce1779_2|672204|organism=Nannochloropsis oceanica|type=polypeptide|length=1967bp
MSLRLAIKASLETAVPVPGVTGAAARTGEGAGGGQRRPPQAAGAGGSGGG
SFVKLKGREAGHKSKPSNSSSNSSISSSCSERGEGKGRIKGPKKGVVSSG
SSLSSSKQIRHKKEFKENVKKTMKSSKSSSSGSVSNSGGGINSSRTGTQP
LRKLSSGASIEDSSLSAPSSSSSSEAGEEDDEQDEEEGSGNEELEDSDEE
EGEKNVVSSSSSSSSSSSSGEGRTKERGSESSEGRMGEGERGRSTGASDE
VVAAAGGGAKRKPAKKPAKEGEETKVEEVEGREGGSGMVAPPSPGMYRRA
QGLRYIVGARVRSRKGGREGWWAGTVSAVDYLEGKGWIEFEEAEDEEEDE
AFDLDSIGVVLETSEAGELQLTSRKSIGGKRMSSSSSLAASSPPEGRGKK
AVAAAAAAPAPAAVAAAGGATTYSSIFNGGSKKRPRTEIIGDESVKQEGG
SSGGRTAAPADAKKKKSKTAGGKAKSSTSHRAAAAAMNSRNGSRSVGGSS
TSRPSDQMVIDSDEAVSSESSPEKLSLSPARPSPAPSMPTGVVKWEDGVQ
EKREGGRSAKQDSRSLSEGLADRDEEEDEGEEKMEEEGKDHESQQQQQQQ
QQQQQQEQEHERQQQQQQREGQRGQQEPPPPPPPPPPQQEEQEHERQQQQ
QQREGQRGQQEPPPPPQQEEQEQEQMSVLGIQGKGKETGGGGGAEDWEDA
CAPAPPKLRTGAVDGGGEGGGGKKKKKQQPPAQAASSTPSPRPLSLDPSS
SPFLPLPPATGGQQQLGGIPPPASASSIISTASSSSNNSFSVQKKTKKSS
STPTNRQSLTPSTSTSSVAATASTSSVAWIQCDECQKWRRLPLPPSAPPP
LPDQWFCSLNTWDLPRASCQAPEEEWQQEQQPQQPPGGKVEGGGRGGGGG
GGGGGRGGGEEGKRAKALAAATGAACPKGGAKGGEGGREGGREGGKSELS
VISAKEFLDRGENENSHKVGGSGGGAGAARGGGKAGGGAIGGIIGKKSAA
SPRNSNQSLLLPPSSSPPEIFAFPPSNPPGLDPAPGHYTLPVGPLDGNEP
PPLPPSSASAAAAVAASAAAVAAAKKWVCCDGCGKWRRVPASVDTAALPE
AWYCHMSTWTTTHLTCAVPEGQEECLPLSSFPPSALPPPIPSSLSSAVPL
LPPVLVTPRNQTAGGGGGRAAAGGSGIPSFSSSGSKGGKDEELEWAAAAA
AAASAAGGMTGGRVAGDTKESGKGGGGGGGGGSGHKKGRGSAGDASGWGL
LPSPREGGRRTPPQGKEGGREGGSSRSNARGNLTAAVATAGRGRGGGGGG
GTDMHDSQGGNEAKEVAWVECERCSKWRKLPDLVNPESLPDKWYCEMNRW
DRERNHCNAPEERYTESSALSAASRGDMHQGGGGGSYFLGGANQGRPSNK
LSWRDMIFGSDGRVRAQYAERGGSSSSSQGQGAPAVSAFVALNPRDQAYG
KEGVFIRSACYKPPPSSRLAALTALPSQGLLEGARRMYGKAAKEAWTAVG
PSTALGEATSSHERSGMERGIVLGVLVEAQQQQQQQPLQQHLERGLTKEM
LWAVVQARRYSCPSWESVRMAMSEDKSRLVDALSLLLADGLLRKTLRPLP
PSLSAPSSRAESAVKAGRRKKHVAFYALAPPVSYPEEEAKERGNGTAAAS
LPPSPPPLFASRPPKARRAWRASAAAAAVAALLQLREDRGREGGSEGGRD
GEGKEEEEEEEEEEEEEEEEEEEREEEEMEEEEREEEEMEGEEESEAAAA
AAAAVVVILKGDEMKETREEDMMVEREAGTEEGAAPTVVEPALSLPSHPV
TAADGGKHKEMEAIAGAVEATTTAAAITAATTAATDASTTIAELASPLLP
PSLSPVSSPTSFPALPAAPALALAEAPAVTRTEKQEHERNGDRLEAERVR
SNINKRLPAVMSMKEEVLMQGREGGEKEKRSKGEEQSRGEGENERGIEGK
EQSMEGNVDEGMKVEG*

Synonyms

Publications