jgi.p|Nanoce1779_2|672373, gene_6964 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|672373
Unique Name	gene_6964
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_17:544087..548253 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	672459
ProteinId	672373
Product name	expressed protein
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:544087..548253 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
GO annotation for N. oceanica CCMP1779 v2	2020-03-30
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006511	ubiquitin-dependent protein catabolic process

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL026	ncniL026	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO13G00520	NO13G00520	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672373	mRNA_6964-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672373	mRNA_6964	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|672373

>mRNA_6964-protein ID=mRNA_6964-protein|Name=jgi.p|Nanoce1779_2|672373|organism=Nannochloropsis oceanica|type=polypeptide|length=1111bp
MSGTAISCTCPHLAAGKSTHKLPAASPLALAVAAVTTPASASSYDTTPSF
LVESRPQKRRAVDKMVSVRAQALANYRRFLEEEDKREQAAAAGLGGSNGG
GSLRGATPATVRFTRSALSTVAETTFECPSCQNEPYLPPSPTTTNSSSSS
SSSSSSSSSNYDRSLADAILKEKEDILICLQCGHKGCRQRSHIDGHFVSS
NHFLGVVALVPGNCKGEGKGEGGEIFCSWCGDFVYDVEFDLLRNVWAQAR
QDAITRDCSSKIGYRSRSRSSRNSSNSGSLLSLPPALRPSLFTWSHLSQP
TTLSHAVRGLRGFYNLGSTCFMNCILQALLHNPVLQHFFLRRSHSLRSCS
KHQATTTAAIAIMVKGRKETGMGVWGGQQHGEGQRNDHGKEGTSSSSSSS
FSPSFATSPCLACELQELFLLVFSREPTMPTPVLLCRPLPLSSSSSSSTK
NKILSTSSSIDQSQLSDDPPKQLEQRQQQQQLQFIHDTYNKSLTAAVANA
TAVANTPPCEPIVPHRLMQAMWSLASVEHLAGYEQQDAHEFLIALLDALH
TDLALPPALPPSIPISRSSSPTKPNPVGTFLSPSTVPALGDRKEGGREGE
IEPSKVIHNAFRGTLRSDVVCSECQAVSTVFEPFLDLSLPLKKMAATIPP
PSSEAAPPAQPAAAPADGGEGDQGKGREGESTADAAVMPSPKMPLVRKPS
TERNRNAEGGDGEGGGGGGEGVGEGGKQGGEEGNVTPSLLATKGKEDCNH
DDDAAMVVAKEAGKESRQGAPTTVTISTSTDSSISGSPPLPSSLSSPSTA
PISCPPKTAASSISSPPLLPSSGSISTLDSPPDALSTSLPSKPTTSTSSS
STSNSRVRRQPDRPRPPPDDLTLSHCLETYTSLETLSCPYRCGSCGGSSP
SCSKQLTLHRLPNVLVLHLKRFDASSARKIEKFVGFPLKGLDMAPYVYEW
RNAGGGGGGGGGKEEGKEDGGKVEKPAGSEREAAAVGGVEGEGEGDKKAA
IMSQVDTTTRNSSGSNNNSSSSSSNKKAEIPYDLFAVCEHLGTSLQQGHY
KAYVQEGAVEGKGGGSGGGWTPAWYVCNDTWVLPVSEEEVLRAQGYVLFY
VRRGWSPYMC*

Synonyms

Publications