jgi.p|Nanoce1779_2|117466, gene_6955 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|117466
Unique Namegene_6955
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_17:517024..519955 -

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Properties
Property NameValue
TranscriptId117552
ProteinId117466
Product name2-oxoisovalerate dehydrogenase subunit beta, mitochondrial
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:517024..519955 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:00038633-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity
GO:0003824catalytic activity
Vocabulary: Cellular Component
TermDefinition
GO:00170863-methyl-2-oxobutanoate dehydrogenase (lipoamide) complex
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL026ncniL026Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00610NO13G00610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|117466mRNA_6955-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|117466mRNA_6955Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|117466

>mRNA_6955-protein ID=mRNA_6955-protein|Name=jgi.p|Nanoce1779_2|117466|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MQGIAFLSTVAGTARAPGRLRRRLLSSSLRTTTRSYTPAAGVMTKRMNLF
TAINDALRTAMDTDQSAIIFGEDVAFGGVFRCTVGLREDFGDGRVFNTPL
CEQGIAGFGIGYASLGKTAIAEIQFADYIFPAFDQLVNEAAKFRYRSGNQ
FNCGGLTVRAPCGAVGHGGHYHSQSPEAYFTHTPGLKVVMPRSPAEAKGL
LLSSIRAPDPVIFLEPKALYRAAVEEVPEGDYTIPLGRADVLREGRDVTV
VGWGGQLRVLEKACDLAADEGIACELIDLRTLLPWDADTVMASVHKTGRL
VVSHEAPVISLVLPPSLPPSENRGFCR*
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Synonyms
Publications