jgi.p|Nanoce1779_2|596288, gene_6776 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596288
Unique Namegene_6776
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_17:70294..74554 -

Link to JBrowse

Properties
Property NameValue
TranscriptId596374
ProteinId596288
Product nameexpressed protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:70294..74554 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0008800beta-lactamase activity
Vocabulary: Biological Process
TermDefinition
GO:0030655beta-lactam antibiotic catabolic process
GO:0046677response to antibiotic
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL026ncniL026Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02350NO13G02350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596288mRNA_6776-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596288mRNA_6776Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|596288

>mRNA_6776-protein ID=mRNA_6776-protein|Name=jgi.p|Nanoce1779_2|596288|organism=Nannochloropsis oceanica|type=polypeptide|length=1361bp
MGVDEFFALVQTNVASLRKRNPAYDGSMRGRFDILGPVPRSWVLDLHREA
AHVAMEVAPDSAGSMPKPDFTLTCESEAVLLEALRGKREFTAAMTRRQLR
VHGNFAKLGKLKDVFEAAPEGNENGDGEDNQTPMLVPVPKSQWEPDGPQC
SQCGAGFSLTTRRHHCRFCGALCCADCTRFRLSHKQKRACMLCHLAVQRA
RREYEENGSSGGVGNGVDRVAPFSPTSSAFGPDYGQDMTERMLTLESRLG
SLERARRVKKARTLLKCADWVIRSATASMLFSGIFVGHYLALIVQMRGWD
VRVMELLQPGLGVVVEWLEPSSFSSWTGQFLAAPLAYLKQLYEQHPTSID
SYWFVLLLTVLATLLLVTSTLCRRSTTAFSVAAVLVVAIELTKVRVRTRL
AAESEAVWEEANYIYGAYLRLAFFRLKGSYIKMAQYISSRADIVPDAFSD
ELSALQDAVPPSPLAAIRPTIERALGSKLDEAFFSFESEALASASIAQVH
RATLKDGTEVVVKVQHPDVAQLLGIDLRNIVVILTVIGWIEPDYDFSMVA
HEWSKEVQKELNFKMEGENLRMAYEGIVQRSGLDAVVPRVLHASSDVLVM
TYCDGVKVTDPRAFPNPETAAEDKALFMKILCEVFAYGCYIEGFFQGDPH
AGNIHVQAYVDADGHRHCRPVVLDWGLAKKLSEHVRVGNAKIVLSVWELD
MGGMLDGMEEVGMPIDLINVVEDVGNIRFMMRNTSPGAEAREQSKQFMED
FVEKSKRKPKSERNPLKTMVPELLFLARVTEMLQGLGAKLGVRVEYMHIM
AASCKRALLQRPRPSLSSDSMSSPPALSFLDRKVRVLLQDLLAEGHGMGA
QVVLYKNGRMLVNAAEGLRSRLDPGRVTPATLFCGFSLTKAVLAILAHAL
VDDNVLSYDTLLVEVCPELKGTGKDNVTLRQILTHSAGLQYAFPSNATPQ
ALWKPHTGIETIKEARPLGVKAGEGKPSMRTQVAMHYYSFGWLLVPVLER
ASGKSLAQLVHEKLLVPLGLQPANDKDLSGIILGPVPGTNELASSDDPRL
ARVEYDLRQLVAELSGDSDGDIGANMGGGLMDMVEGMMDFEDGEEGAEEA
AAFKELARTKLAGREFLLDHRILNGKRCRSSGALPSLSGRFTARALADIL
ESLCRLERSSGNFIQQQFLATTTTSSVTSGSAASPSKTTITFSLKQGGNG
GGGMAYNKSASSLAATPAGLSPGTSPFSILSLTRLQDMKANPMDDAPGLT
RLMGRENTIKLGCGVQLFGFEAPMAGTSQTVGEGSAAGEASNVTTRTVRW
GSAYGHAGACGQLALCDPSTGVVLVVTSNKAATPGQKNVGYEVLSLVAEE
LNLGKPLPIW*
back to top
Synonyms
Publications