jgi.p|Nanoce1779_2|593606, gene_6053 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593606
Unique Namegene_6053
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_14:415680..420518 -

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Properties
Property NameValue
TranscriptId593692
ProteinId593606
Product nameexpressed protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:415680..420518 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO:0004386helicase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL018ncniL018Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01710NO16G01710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593606mRNA_6053-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593606mRNA_6053Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|593606

>mRNA_6053-protein ID=mRNA_6053-protein|Name=jgi.p|Nanoce1779_2|593606|organism=Nannochloropsis oceanica|type=polypeptide|length=1520bp
MGNTTLLSAKAGIPAPPPAASSSLVSFKFRRPPLAVTTTRVTNVAASTAV
GAIPPAPTSNVVLGSKRWTEEAEAADGIRTSTTVRSSSNNNSNSNSISNN
HSSNNRSSSSNTSITSKNGRMLPTADVKALTSLGAKTNRGFLSRGAAWRD
RVASLTEAEMEEGKEKHLGSMRLSLLEVKSEGEEEEEKEEEEEKIRFAKA
AEAMEIHEDEEDEGVNEDDAFRIMSDLDEAGSKASVGNEVDHNNKMIVKA
TCSSKTTAVTAAAAASILPPSTTMTKKPAVAAASVAVALKKDSITVVPVE
VTVALPLPKPKPRQKKLKPGEVSDNFIALNLKRKGTAKNRKVKSVKSLAR
RQAWIEQRQECDSNKGSGTNGGKRGGNRMSRPGRAVDPLDVCLDVLEGFL
KVGEKDEVKESMMARALEEVSQLRSKDIREVRDPVLKALAPKCAHHHQPS
RLLRVKKSGPNKGRRFYTCSFPRGEECGFFMWVEDNPVLVAAEIGPPSVM
SLPSLGKEEDAEWTERQMEGWKARFNKMTIPELKDQAKRRGLALSGTKKV
LVARLMDGLEEAVVAPGATEIKKEQEEEEEKEKEDVEEGSEEGDDEASEC
NSDDEDYELDIIEAALEGRPEEVEEDSGDDEGQKDEGEEDEEDEDEAEDE
DGIAGEAVAAVQPERKRRIQSDNSSNEVEEKEAMDEGETGTSDSDSDDEE
EKAPAKKKSRKAPSKAKSPPTKSKPGSKLEKADSYPPVMRGLAPLPAPVL
GSGEMFTEEMARETLQGIFGYQDFRPGQFWAIQRALAGENSLLMLPTGAG
KSLCYQMAAACAPVGSLVMVVSPLISLMIDQLARLPPQVPGACLAGNLSM
RELARIIRDLRSGRLRVLFVSPEKLCSPSFGRLVGEDVAGRGGAAFPPVS
LVCIDEAHCISQWSHNFRPAFLRLGRNIENLLKPRALLAMTATADADVIG
DICARLRISPTEGVLLQPWRRHNLRLRVELLDGDAQLKRQRILDLLSRPP
YDRGSVIVYVRQQRDADVLKEFLVSQGQPAIAYHAGMDLKHRASAQSAWM
RRRGTRVSGHARVCVATIAFGLGVDKGDVRAVLHYEMPKSIENLVQETGR
AGRDGKEAWCPTLLSQDDFWRQHSLAHSDGVTALQLRGLLGMLSSLAAAA
KATPKAQNRGGGKEGGKEEWDKEGVQVAVDIKNTSIALDIREEVLETALV
LMELPPFSMLTLHGTVQDEFQVVFRKRQASMLRKSEAVIDTLLDVGTPSA
DLFERTSDTFGASYGYGSAACSLVRLASAMGPDWKPHDVVKELARLQAMG
ELQFTAAAKPHFHLTLLPPPSSTTSTSTEDEAAAEAAAVSSTPLSLHRIG
EVVAALAERMTAIEVASVQKVEQVYSVLRAAAGAPDEEGQEAQTLELIDA
YFAKKDLPLPLNLPMSFAPAIPSQVQVVMRRDANILLLDPRLVLLLQQVV
GRSRRRGAPTNVNLEMELRLYKARLVTRVFHGIGSPRVPLMEWRESPFWG
KHRQYKFEDVESTLSVGEG*
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Synonyms
Publications