jgi.p|Nanoce1779_2|671616, gene_5924 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|671616
Unique Namegene_5924
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_14:80775..83806 +

Link to JBrowse

Properties
Property NameValue
TranscriptId671702
ProteinId671616
Product namebeta-1,6-glucan active enzyme, family GH16
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:80775..83806 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL018ncniL018Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00500NO16G00500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671616mRNA_5924-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671616mRNA_5924Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|671616

>mRNA_5924-protein ID=mRNA_5924-protein|Name=jgi.p|Nanoce1779_2|671616|organism=Nannochloropsis oceanica|type=polypeptide|length=594bp
MPLLPLLLPLLLSLPSALAGWVDPDSPLSARKTHSYRDPRLPPLKLVMSD
EFNVVNRTFADGDDPTWTAGDHSDDARTSVGKGALIFYNHSYVSTTDEGY
LKITTTGEATKWKGFNPFTKKYEVFEKEFRGGMVNSWNKFCFSGGVVEVR
LRLPGKSDTGGLWPAFWLMGNLGRATYEHSTNMMWPWSYNRCDRDRQEAQ
EISGCDRTTHWDLLQNQGRGATEIDVMEAMPGKQVSKGDMGDLGVGLPYM
SSTLQISPGVPKNRPVPGKNFTELGADWSWYDGLTFGETSKMNMYFYGTM
LDKTQKDEPAGRSIRQVYQADAVSALTPLSSDHWESFHTYRLEWMPGTGG
YLAWFLDGKKLYDIPAFSVQGATGAQIPEEPSYLILNTAVSTTWGFPQAC
PEGCACDCFDCAKPECRCSLPVGLCEMLPASMLVDYVRVYQLEDDERHFL
GCDNPRYPTRKFIQAHRWRYQRDDEDVPLLPILKGTGACTGEDDCGPGGA
CHARKKTCVCREGWTGPHCKQKAYHDDDARGKVYLTIRAPSMPPVTLAGS
LVALGVVLVFAVWMSVKDREKEEEEAAEARRERENGEGEGWNR*
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Synonyms
Publications