jgi.p|Nanoce1779_2|590448, gene_5828 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590448
Unique Namegene_5828
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_11:666534..670736 +

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Properties
Property NameValue
TranscriptId590534
ProteinId590448
Product namenitrate reductase
Portal idNanoce1779_2
Mutants
The following records are associated with this feature:
TitleMethodAccession dateLast modified date
episomal CRISPR system for NR knockoutCRISPR/Cas2019-05-102020-08-24
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:666534..670736 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0030151molybdenum ion binding
GO:0016491oxidoreductase activity
GO:0020037heme binding
GO:0046914transition metal ion binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL069ncniL069Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02460NO14G02460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590448mRNA_5828-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590448mRNA_5828Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|590448

>mRNA_5828-protein ID=mRNA_5828-protein|Name=jgi.p|Nanoce1779_2|590448|organism=Nannochloropsis oceanica|type=polypeptide|length=827bp
MAFKLSPQVPTAPEPVRATSTDARDDDTADKWVQRLPGMIRLTGRHPFNA
EPHTKELVDAGFITPAAMHYVRNHGPVPKLAWDDHRITVTGLGVAEPQVL
SMDELVALPNRTLPVTLVCAGNRRKEVNVTRQSKGFSWGSGAVSTSIWTG
VPLHVLLRHCGVDPDALEPGQYWVNFDGPDGELPKGIYGTSIPLLKALDP
AQDVLVAFKQNHERLLPDHGFPVRLIIPGYIGGRMIKWLTRITISRQESQ
SFYHFHDNRVLPSSVDQERADNEGWWRKPEYIINDLNLNSAITHPTHDEE
IPLKKGTYKLQGYAYCGGGRQVQRMEVSLDDGKSWELAQLSSEEYPTEHG
RFWCWRIWNLDVDILRLVGCTNVACRAWDNSQNTQPRDLTWNVLGMMNNS
WFRLTTAVSLNDRQQPVVRIKHPAPIAPGGWMEAGADETVNVQAKTTGTG
SGRSHVEDKSVPSIAQRKDLSVITREELARHNSKTDCWIAVKGQVYDVTP
YLQEHPGGVAAIVMNAGKDATEDFEAIHSKRAWAMLDEYLVGTLGASLTS
SSPEASAIAAPKEAAVALQGKNRAIKCKLVFKEYESPDVLRIRFGLPQPD
QPLGLPVGMHIGLRAVINGESTKRQYTPVSDGDAKGHVELLVKVYRANQH
PRFPDGGLMSQHLDRMSLGDCIDIDGPLGHITYEGPGCIRQLGEDVHVKH
FVAVAGGTGITPVVQVLRAVLENPCDTTRFSLIYAARVPEDLLLREELDA
WAEQYEQFTVHYTVDVPPPDWPYSVGFLTAEMLAANFPEATKDMGALICG
PPPMVNFAVKPNLEKLGYTEDQFFIF*
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Synonyms
Publications
YearPublication
2018Poliner E, Takeuchi T, Du ZY, Benning C, Farré EM. Nontransgenic Marker-Free Gene Disruption by an Episomal CRISPR System in the Oleaginous Microalga, Nannochloropsis oceanica CCMP1779. ACS Synthetic Biology. 2018 04 20; 7(4):962-968.