jgi.p|Nanoce1779_2|592380, gene_5387 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592380
Unique Namegene_5387
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_13:312003..317549 -

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Properties
Property NameValue
TranscriptId592466
ProteinId592380
Product nameP-loop containing nucleoside triphosphate hydrolase protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:312003..317549 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0016887ATPase activity
GO:0005524ATP binding
GO:0000166nucleotide binding
GO:0017111nucleoside-triphosphatase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0009376HslUV protease complex
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL015ncniL015Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region
ncniL014ncniL014Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02260NO12G02260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592380mRNA_5387-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592380mRNA_5387Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|592380

>mRNA_5387-protein ID=mRNA_5387-protein|Name=jgi.p|Nanoce1779_2|592380|organism=Nannochloropsis oceanica|type=polypeptide|length=568bp
MIRSLTRSASISNRVASASSIPFSTSSSPNTRIAVSTSSICLSHPIPPLH
RHNSFSCTPLSLVSQSNRRALSIETEPPPPPSGGSDGTAVSGDGGAGTTS
TETAAADKPQPTPATPEVVAAALKPKELVKYLDRYIVGQADAKRAVAIAL
RNRWRRHKLPEDLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKV
EATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIKAEAQKAVEEKI
LQILTGPYARDDAKETFRDLLRKGSLNDRLVDVEVPADRGSAGGVFDKAG
AGPGSGAFAESNPNVSMADFIGKFSRAIMPKRPMEKRKILVKEAMPLLLE
VEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDYRGADASAEGV
QRDLLPLIEGCTISTKHGNVNTDYILFISSGAFHQCKPADLLAELQGRLP
IRVELKGLTEDDMYRILTEPITNLIAQQVALLSTEKVALEFTDEAVREIA
RVAALVNKTVENIGARRLHTVLERIVEEISFEASDKAEGAVITVDKDLVQ
SRVNDLLVESDISKYIL*
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Synonyms
Publications