jgi.p|Nanoce1779_2|647840, gene_5132 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|647840
Unique Namegene_5132
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_12:537474..543736 -

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Properties
Property NameValue
TranscriptId647926
ProteinId647840
Product nameexpressed protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:537474..543736 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL010ncniL010Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|647840mRNA_5132-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|647840mRNA_5132Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|647840

>mRNA_5132-protein ID=mRNA_5132-protein|Name=jgi.p|Nanoce1779_2|647840|organism=Nannochloropsis oceanica|type=polypeptide|length=1878bp
MVLMLVLCVSPTPPTRPTISAGMSRPLHQHPPASAQEVDTAELYFLVADF
LARSTPCQRAASVLREELTEHSLLGMSYDWQGHSHRSTPQELSLKYRHLP
RDQLPRLLQAALQASSNSGSGGGGGTGSFEQHQHQQQHFARSRGLNAGSG
TDLRVPSLLTALPGSGKSPEAIQVRYQLVSALAQLSEASAQLRRVKMAIA
RAEEEAATNATMKMIIEMDKDEKTGHRHHHQQQQQQSQPSTPSPAALSIT
QAAEPNEPKAEEKGEGGGATLEGMLSMPPSVTAEISSMQMEEQQGASSGS
SGSSSQSKVGCWEEERHELRMEGDGEVDNEEHKQRQQQQQQQQQQRQVEE
QQQEQQLLPPVQRQQEQEAAPVNATGEAVDTGVKIEEDEDEEKEEEEEEP
EMQILIDTTMPSSRSSSNETDVGGASRARARRQLEERVIGCQRKVKALLA
RARELHALRTREIHEGCHTHADVILRRQGLPSARCAQLPREKRPLPGLYG
SRLRHLKTINGHMFCPVYCLKYDKRGQYVVTGADDQLVKLWNVRTGCLMR
SLRGHSGVITDLCVSSDNALLATSSEDGVVRIWNAADGTPLTLLQGHTDT
INYVHFHPYYNLLLTGSDDGTARAWDLGKVKETTKEAVYPLLPLAPDALP
PSCVFPHTPPVFPATAAAAVSGGGGGGEVEQRSKVKCISICPLGGFLATG
AEDGVARIWSLADVEKRGGRAEEEAQLLLEASLGVDGEGGGGGGGGRAGV
RRGATAMGPNASPSHHQQQRQQPPLGEGLGQLVCRLQASKTAVTDVNYSN
LGDRLFTGSMPEGVVRVWSWGPNYSSLTHLVLDPQAVEGGGEGGGGEGEE
EGFGSAGGGGGGGAVGRSKTGVGERGKKELVPTVDNALWTCDDRQIITAH
STKPSSASSASSSAPAEPHPDWKQHLRVWDSSTGRLLRVLHGHRRQSTVL
AVHPFDPRIVMSAGYDGKICLWDVSAVGKCMQSFTNILEWGPPGNDYNLG
DAVALVDGQFSCDGWGFSVADACGRLLLFGPEEQGRYHRAPSEQYFVGDY
DQLQWDVHGNVIDAARQVAPHLLPRRALTNSERVAYPEQPTWGLTGPLPV
GKEEMKVSIVKARERMGGVEKLLEVRAAAAAKAAARMPSRTVLLGLGGGG
GDRRGRGGRGGGSEGGRARYGEEFQYAWGSDGEDEDEVEVVGGRGDGMSR
AERLRRRREGGGEGGREGVLSLRQRDRQRRREAALQRQQRRQRRRARGRG
DDQDPSSDEDWTEEGRRVGEEEEEEEWEGGEGWSDEEEDDGNDSDYGGRV
RRAGGAGRGRRQRVRAMALAGSTRDGGGGGGGGEERGAAGSGFGPIDPRA
QGIPVELDEFIETITATTLLVAPTAAAAATGGEEEGEPATTDGERVGGGG
GGGGGGGDEGGGGENGANAAAGMLPVLPPPPVVLTLEGAAPNAQGEVDRR
TLLCSLCGKGHSQGQPLPGPVLGSHPLKMRDRPVWVHDDCAHWSPQTFVG
QEDGRWYNIAVEVRRGRRTKCKGCGKLGATIGCNVRTCSKSYHYPCAVAT
GWSFTPEQYFHCQRHRPEGEGEGGAEAGGRRRGRVGRRRVGAMGAGAGAG
GRGRRASRMAPARGRLRRRKRDGGVEGEEDEDEEEEEEQEREEEEVEYLD
VSATRGSSGSGIVYKGQWYPGEGMEMAREWLRASTQEQDVSGLLVPQQGD
EVIYLPRAHYEAQVRVQWKEMEFTKAAGGGGGGGKKKAGAIAAAVAGAGA
GGGGGGGGGGGGGVGLSVLPAAGGGAPASLPASFTGPWDFLPIEWSAVKC
RVDRVSYSFPETEEAYLAAPSIVCRVSLTVLAAGEFIEDMVDSEEEEEAM
KEGGGGETGLWMVEFRPGLGGLEGMHP*
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Synonyms
Publications